Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g039260.2 Solanum lycopersicum HOM05M000366 ORTHO05M017293 6.3e-66 253.1 117 100.0
Solyc10g046840.1 Solanum lycopersicum HOM05M000366 ORTHO05M017293 1.9e-46 188.3 117 78.6
Solyc07g025180.2 Solanum lycopersicum HOM05M000366 ORTHO05M017293 5.6e-38 160.2 92 81.5
Solyc02g088000.3 Solanum lycopersicum HOM05M000366 ORTHO05M001274 4.7e-21 104.0 70 71.4
Solyc03g059290.1 Solanum lycopersicum HOM05M000366 ORTHO05M017293 1.2e-19 99.4 55 80.0
Potri.017G084100 Populus trichocarpa HOM05M000366 ORTHO05M001274 2.9e-18 94.7 70 67.1
ATR0564G338 Amborella trichopoda HOM05M000366 ORTHO05M001274 3.8e-18 94.4 70 62.9
AT3G01180 Arabidopsis thaliana HOM05M000366 ORTHO05M001274 1.1e-17 92.8 70 62.9
Glyma.19G022900 Glycine max HOM05M000366 ORTHO05M001274 1.1e-17 92.8 70 64.3
evm.TU.AsparagusV1_03.1686.V1.1 Asparagus officinalis HOM05M000366 ORTHO05M001274 2.4e-17 91.7 70 61.4
p5.00_sc00036_p0006 Elaeis guineensis HOM05M000366 ORTHO05M001274 2.4e-17 91.7 70 62.9
CALSI_Maker00002955 Calamus simplicifolius HOM05M000366 ORTHO05M001274 5.4e-17 90.5 70 61.4
CALSI_Maker00009634 Calamus simplicifolius HOM05M000366 ORTHO05M001274 5.4e-17 90.5 70 61.4
CDE02G4400 Ceratophyllum demersum HOM05M000366 ORTHO05M001274 7.1e-17 90.1 69 62.3
DDU550G0309 Dioscorea dumetorum HOM05M000366 ORTHO05M001274 2.1e-16 88.6 70 61.4
MBI02_g15396_MAGBIO Magnolia biondii HOM05M000366 ORTHO05M001274 2.1e-16 88.6 69 60.9
Ma06_g25980 Musa acuminata HOM05M000366 ORTHO05M001274 2.1e-16 88.6 69 60.9
Spipo0G0050800 Spirodela polyrhiza HOM05M000366 ORTHO05M001274 2.1e-16 88.6 70 60.0
Horvu_MOREX_6H01G472000 Hordeum vulgare HOM05M000366 ORTHO05M001274 2.7e-16 88.2 70 60.0
AET6Gv20761400 Aegilops tauschii HOM05M000366 ORTHO05M001274 3.5e-16 87.8 70 60.0
EJB05_20018 Eragrostis curvula HOM05M000366 ORTHO05M001274 3.5e-16 87.8 70 61.4
TraesCS6D03G0680800 Triticum aestivum HOM05M000366 ORTHO05M001274 3.5e-16 87.8 70 60.0
Bradi3g59440 Brachypodium distachyon HOM05M000366 ORTHO05M001274 7.8e-16 86.7 70 60.0
GWHGAZTO020756 Oryza alta HOM05M000366 ORTHO05M001274 7.8e-16 86.7 70 60.0
GWHGAORA060718 Cenchrus purpureus HOM05M000366 ORTHO05M001274 1.0e-15 86.3 70 60.0
GWHGASIY033148 Secale cereale HOM05M000366 ORTHO05M001274 1.0e-15 86.3 70 58.6
TraesCS6A03G0804900 Triticum aestivum HOM05M000366 ORTHO05M001274 1.0e-15 86.3 70 58.6
TRIDC6AG046310 Triticum dicoccoides HOM05M000366 ORTHO05M001274 1.0e-15 86.3 70 58.6
TRITD6Av1G189220 Triticum turgidum HOM05M000366 ORTHO05M001274 1.0e-15 86.3 70 58.6
GWHGAZTO072379 Oryza alta HOM05M000366 ORTHO05M001274 1.3e-15 85.9 70 58.6
OsKitaake02g331200 Oryza sativa Kitaake HOM05M000366 ORTHO05M001274 1.3e-15 85.9 70 58.6
OsR498G0204761600.01 Oryza sativa ssp. indica HOM05M000366 ORTHO05M001274 1.3e-15 85.9 70 58.6
Os02g0744700 Oryza sativa ssp. japonica HOM05M000366 ORTHO05M001274 1.3e-15 85.9 70 58.6
CDE09G0475 Ceratophyllum demersum HOM05M000366 ORTHO05M001274 1.7e-15 85.5 69 59.4
Ma08_g24830 Musa acuminata HOM05M000366 ORTHO05M001274 1.7e-15 85.5 68 60.3
OB02G39280 Oryza brachyantha HOM05M000366 ORTHO05M001274 1.7e-15 85.5 70 58.6
Aco021017 Ananas comosus HOM05M000366 ORTHO05M001274 2.3e-15 85.1 70 58.6
HPP92_006026 Vanilla planifolia HOM05M000366 ORTHO05M001274 2.3e-15 85.1 70 57.1
GWHGAORA025254 Cenchrus purpureus HOM05M000366 ORTHO05M001274 3.0e-15 84.7 70 60.0
Ma04_g10170 Musa acuminata HOM05M000366 ORTHO05M001274 3.0e-15 84.7 70 57.1
Seita.1G318200 Setaria italica HOM05M000366 ORTHO05M001274 3.0e-15 84.7 70 60.0
Sevir.1G324500 Setaria viridis HOM05M000366 ORTHO05M001274 3.0e-15 84.7 70 60.0
Ma01_g17750 Musa acuminata HOM05M000366 ORTHO05M001274 3.9e-15 84.3 69 56.5
Pahal.1G381200 Panicum hallii HOM05M000366 ORTHO05M001274 5.1e-15 84.0 70 60.0
Zm00001eb254490 Zea mays B73 HOM05M000366 ORTHO05M001274 5.1e-15 84.0 70 58.6
Ot_Un117_g25812 Oropetium thomaeum HOM05M000366 ORTHO05M001274 6.6e-15 83.6 70 55.7
Sspon.01G0018500-2B Saccharum spontaneum HOM05M000366 ORTHO05M001274 6.6e-15 83.6 70 54.3
Sspon.01G0018500-3C Saccharum spontaneum HOM05M000366 ORTHO05M001274 6.6e-15 83.6 70 54.3
Zm00001eb222830 Zea mays B73 HOM05M000366 ORTHO05M001274 6.6e-15 83.6 70 54.3
Zm00007a00023352 Zea mays B104 HOM05M000366 ORTHO05M001274 6.6e-15 83.6 70 58.6
Zm00007a00030537 Zea mays B104 HOM05M000366 ORTHO05M001274 6.6e-15 83.6 70 54.3
MBI05_g34358_MAGBIO Magnolia biondii HOM05M000366 ORTHO05M001274 8.6e-15 83.2 67 59.7
Misin01G220200 Miscanthus sinensis HOM05M000366 ORTHO05M001274 8.6e-15 83.2 70 52.9
Sspon.04G0003570-1A Saccharum spontaneum HOM05M000366 ORTHO05M001274 8.6e-15 83.2 70 58.6
Sspon.04G0003570-2C Saccharum spontaneum HOM05M000366 ORTHO05M001274 8.6e-15 83.2 70 58.6
TraesCS6B03G0953800 Triticum aestivum HOM05M000366 ORTHO05M001274 8.6e-15 83.2 67 59.7
TRIDC6BG053970 Triticum dicoccoides HOM05M000366 ORTHO05M001274 8.6e-15 83.2 67 59.7
TRITD6Bv1G179480 Triticum turgidum HOM05M000366 ORTHO05M001274 8.6e-15 83.2 67 59.7
Zm00001eb194550 Zea mays B73 HOM05M000366 ORTHO05M001274 8.6e-15 83.2 70 58.6
GWHGAORA018091 Cenchrus purpureus HOM05M000366 ORTHO05M001274 1.1e-14 82.8 70 54.3
Misin07G481300 Miscanthus sinensis HOM05M000366 ORTHO05M001274 1.1e-14 82.8 70 58.6
Misin08G270500 Miscanthus sinensis HOM05M000366 ORTHO05M001274 1.1e-14 82.8 70 58.6
Sspon.04G0003570-1P Saccharum spontaneum HOM05M000366 ORTHO05M001274 1.1e-14 82.8 70 58.6
Sspon.04G0003570-3D Saccharum spontaneum HOM05M000366 ORTHO05M001274 1.1e-14 82.8 70 58.6
Sobic.004G238600 Sorghum bicolor HOM05M000366 ORTHO05M001274 1.1e-14 82.8 70 58.6
Dexi9A01G0022580 Digitaria exilis HOM05M000366 ORTHO05M001274 1.5e-14 82.4 70 52.9
Dexi9B01G0022030 Digitaria exilis HOM05M000366 ORTHO05M001274 1.5e-14 82.4 70 52.9
Pahal.9G241000 Panicum hallii HOM05M000366 ORTHO05M001274 1.5e-14 82.4 70 52.9
Bradi3g27260 Brachypodium distachyon HOM05M000366 ORTHO05M001274 1.9e-14 82.0 74 55.4
PH02Gene01052 Phyllostachys edulis HOM05M000366 ORTHO05M001274 1.9e-14 82.0 70 58.6
Seita.9G243600 Setaria italica HOM05M000366 ORTHO05M001274 1.9e-14 82.0 70 54.3
Sevir.9G243600 Setaria viridis HOM05M000366 ORTHO05M001274 1.9e-14 82.0 70 54.3
EJB05_22245 Eragrostis curvula HOM05M000366 ORTHO05M001274 2.5e-14 81.6 70 52.9
EJB05_53431 Eragrostis curvula HOM05M000366 ORTHO05M001274 2.5e-14 81.6 70 52.9
Misin02G214100 Miscanthus sinensis HOM05M000366 ORTHO05M001274 2.5e-14 81.6 70 52.9
GWHGAZTO061024 Oryza alta HOM05M000366 ORTHO05M001274 2.5e-14 81.6 82 48.8
OsKitaake10g110500 Oryza sativa Kitaake HOM05M000366 ORTHO05M001274 2.5e-14 81.6 70 54.3
OsR498G1018786300.01 Oryza sativa ssp. indica HOM05M000366 ORTHO05M001274 2.5e-14 81.6 70 54.3
Os10g0437600 Oryza sativa ssp. japonica HOM05M000366 ORTHO05M001274 2.5e-14 81.6 70 54.3
SEGI_10180 Sequoiadendron giganteum HOM05M000366 ORTHO05M001274 2.5e-14 81.6 70 55.7
GWHGAZTO008683 Oryza alta HOM05M000366 ORTHO05M001274 3.3e-14 81.3 82 47.6
PH02Gene47805 Phyllostachys edulis HOM05M000366 ORTHO05M001274 4.3e-14 80.9 70 54.3
OB10G18500 Oryza brachyantha HOM05M000366 ORTHO05M001274 5.6e-14 80.5 82 48.8
Sspon.01G0018500-1A Saccharum spontaneum HOM05M000366 ORTHO05M001274 5.6e-14 80.5 70 52.9
Sspon.01G0059690-1D Saccharum spontaneum HOM05M000366 ORTHO05M001274 5.6e-14 80.5 70 52.9
Sobic.001G239500 Sorghum bicolor HOM05M000366 ORTHO05M001274 5.6e-14 80.5 70 52.9
GWHGAZTO037669 Oryza alta HOM05M000366 ORTHO05M001274 7.3e-14 80.1 70 55.7
GWHGAZTO086502 Oryza alta HOM05M000366 ORTHO05M001274 7.3e-14 80.1 70 55.7
OsKitaake06g089300 Oryza sativa Kitaake HOM05M000366 ORTHO05M001274 7.3e-14 80.1 70 55.7
OsR498G0611935700.01 Oryza sativa ssp. indica HOM05M000366 ORTHO05M001274 7.3e-14 80.1 70 55.7
Os06g0229800 Oryza sativa ssp. japonica HOM05M000366 ORTHO05M001274 7.3e-14 80.1 70 55.7
PH02Gene07928 Phyllostachys edulis HOM05M000366 ORTHO05M001274 7.3e-14 80.1 70 55.7
PH02Gene10028 Phyllostachys edulis HOM05M000366 ORTHO05M001274 2.8e-13 78.2 70 54.3
PH02Gene31327 Phyllostachys edulis HOM05M000366 ORTHO05M017293 2.8e-13 78.2 70 55.7
TraesCS1A03G0361500 Triticum aestivum HOM05M000366 ORTHO05M001274 2.8e-13 78.2 70 52.9
TRIDC1AG020270 Triticum dicoccoides HOM05M000366 ORTHO05M001274 2.8e-13 78.2 70 52.9
TRITD1Av1G080190 Triticum turgidum HOM05M000366 ORTHO05M001274 2.8e-13 78.2 70 52.9
AET1Gv20357200 Aegilops tauschii HOM05M000366 ORTHO05M001274 3.6e-13 77.8 70 52.9
Horvu_MOREX_1H01G228900 Hordeum vulgare HOM05M000366 ORTHO05M001274 3.6e-13 77.8 70 52.9
OB06G17800 Oryza brachyantha HOM05M000366 ORTHO05M001274 3.6e-13 77.8 70 52.9
TraesCS1D03G0348800 Triticum aestivum HOM05M000366 ORTHO05M001274 3.6e-13 77.8 70 52.9
Bradi1g45130 Brachypodium distachyon HOM05M000366 ORTHO05M001274 8.1e-13 76.6 70 52.9
V3.Lp_chr1_0G6826 Lolium perenne HOM05M000366 ORTHO05M001274 1.1e-12 76.3 70 51.4
GWHGAORA016723 Cenchrus purpureus HOM05M000366 ORTHO05M001274 1.8e-12 75.5 67 55.2
GWHGAORA056504 Cenchrus purpureus HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Misin18G102500 Miscanthus sinensis HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Pahal.4G265400 Panicum hallii HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Sspon.08G0011120-2B Saccharum spontaneum HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Sspon.08G0011120-3C Saccharum spontaneum HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Sspon.08G0011120-4D Saccharum spontaneum HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Seita.4G099700 Setaria italica HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Sevir.4G099100 Setaria viridis HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Sobic.010G093400 Sorghum bicolor HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Zm00001eb279740 Zea mays B73 HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
Zm00007a00008148 Zea mays B104 HOM05M000366 ORTHO05M001274 3.1e-12 74.7 67 55.2
EJB05_45544 Eragrostis curvula HOM05M000366 ORTHO05M001274 4.0e-12 74.3 67 53.7
EJB05_45546 Eragrostis curvula HOM05M000366 ORTHO05M001274 4.0e-12 74.3 67 53.7
Misin19G100900 Miscanthus sinensis HOM05M000366 ORTHO05M001274 4.0e-12 74.3 67 53.7
Ot_Chr2_g15905 Oropetium thomaeum HOM05M000366 ORTHO05M001274 4.0e-12 74.3 67 53.7
Dexi4A01G0009220 Digitaria exilis HOM05M000366 ORTHO05M001274 5.2e-12 73.9 67 53.7
Dexi4B01G0009570 Digitaria exilis HOM05M000366 ORTHO05M001274 5.2e-12 73.9 67 53.7
Zjn_sc00022.1.g01450.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000366 ORTHO05M001274 5.2e-12 73.9 70 54.3
Zjn_sc00049.1.g04550.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000226 ORTHO05M001274 6.9e-12 73.6 67 52.2
Sspon.08G0011120-1A Saccharum spontaneum HOM05M000366 ORTHO05M001274 9.0e-12 73.2 67 53.7
Zosma06g17190 Zostera marina HOM05M000366 ORTHO05M001274 9.0e-12 73.2 69 55.1
GWHGASIY020860 Secale cereale HOM05M000366 ORTHO05M001274 1.2e-11 72.8 70 51.4
Mapoly0148s0026 Marchantia polymorpha HOM05M000366 ORTHO05M001274 1.5e-11 72.4 67 49.3
CDE04G1630 Ceratophyllum demersum HOM05M000366 ORTHO05M001274 2.0e-11 72.0 67 53.7
Ot_Chr1_g04188 Oropetium thomaeum HOM05M000366 ORTHO05M001274 2.0e-11 72.0 70 52.9
AET7Gv20483200 Aegilops tauschii HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
Horvu_MOREX_7H01G216500 Hordeum vulgare HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
SEGI_17123 Sequoiadendron giganteum HOM05M000366 ORTHO05M001274 2.6e-11 71.6 69 47.8
TraesCS7A03G0440500 Triticum aestivum HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
TraesCS7B03G0248500 Triticum aestivum HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
TraesCS7D03G0426300 Triticum aestivum HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
TRIDC7AG023510 Triticum dicoccoides HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
TRIDC7BG013950-8026 Triticum dicoccoides HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
TRIDC7BG013950-94299 Triticum dicoccoides HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
TRITD7Av1G061960 Triticum turgidum HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
TRITD7Bv1G038900 Triticum turgidum HOM05M000366 ORTHO05M001274 2.6e-11 71.6 70 50.0
Dexi1A01G0029340 Digitaria exilis HOM05M000366 ORTHO05M001274 4.4e-11 70.9 70 52.9
Dexi1B01G0026130 Digitaria exilis HOM05M000366 ORTHO05M001274 4.4e-11 70.9 70 52.9
Glyma.13G062700 Glycine max HOM05M000366 ORTHO05M001274 4.4e-11 70.9 70 51.4
GWHGASIY001769 Secale cereale HOM05M000366 ORTHO05M001274 4.4e-11 70.9 70 47.1
Glyma.18G260101 Glycine max HOM05M000366 ORTHO05M001274 5.8e-11 70.5 48 68.8
Pp3c21_6820 Physcomitrium patens HOM05M000366 ORTHO05M001274 9.9e-11 69.7 70 47.1
Pp3c21_6821 Physcomitrium patens HOM05M000366 ORTHO05M001274 9.9e-11 69.7 70 47.1
V3.Lp_chr7_0.1G2358 Lolium perenne HOM05M000366 ORTHO05M001274 2.2e-10 68.6 70 48.6
SMO234G0040 Selaginella moellendorffii HOM05M000366 ORTHO05M001274 2.9e-10 68.2 69 44.9
AagrBONN_evm.TU.Sc2ySwM_344.4941 Anthoceros agrestis HOM05M000366 ORTHO05M001274 3.8e-10 67.8 69 46.4
CBR_g23365 Chara braunii HOM05M000366 ORTHO05M001274 4.9e-10 67.4 72 44.4
Pp3c19_7710 Physcomitrium patens HOM05M000366 ORTHO05M001274 4.9e-10 67.4 70 45.7
Pp3c19_7712 Physcomitrium patens HOM05M000366 ORTHO05M001274 4.9e-10 67.4 70 45.7
p5.00_sc00170_p0016 Elaeis guineensis HOM05M000366 ORTHO05M001274 6.4e-10 67.0 56 58.9
Pp3c22_6120 Physcomitrium patens HOM05M000366 ORTHO05M001274 6.4e-10 67.0 70 47.1
TraesCS1B03G0450400 Triticum aestivum HOM05M000366 ORTHO05M001274 6.4e-10 67.0 70 47.1
TRIDC1BG025330 Triticum dicoccoides HOM05M000366 ORTHO05M001274 6.4e-10 67.0 70 47.1
TRITD1Bv1G086030 Triticum turgidum HOM05M000366 ORTHO05M001274 6.4e-10 67.0 70 47.1
Cre03.g185250 Chlamydomonas reinhardtii HOM05M000366 ORTHO05M001274 8.4e-10 66.6 67 46.3
HPP92_006007 Vanilla planifolia HOM05M000366 ORTHO05M001274 7.8e-08 60.1 51 54.9
Zm00007a00039096 Zea mays B104 HOM05M000366 ORTHO05M017293 1.3e-07 59.3 68 44.1


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