Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065400.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 7.1e-162 573.2 301 100.0
Solyc11g018620.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 4.6e-129 464.2 286 82.5
Potri.019G083500 Populus trichocarpa HOM05M000972 ORTHO05M002154 3.9e-120 434.5 275 81.8
Potri.013G113000 Populus trichocarpa HOM05M000972 ORTHO05M002154 5.1e-120 434.1 290 78.3
AT4G09580 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 4.8e-118 427.6 288 76.0
Glyma.20G175400 Glycine max HOM05M000972 ORTHO05M002154 4.1e-117 424.5 283 76.3
Glyma.10G216600 Glycine max HOM05M000972 ORTHO05M002154 1.7e-115 419.1 283 74.9
DDU272G0262 Dioscorea dumetorum HOM05M000972 ORTHO05M002154 2.8e-110 401.7 289 73.7
AT1G71940 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 2.4e-109 398.7 246 80.1
Ma06_g07870 Musa acuminata HOM05M000972 ORTHO05M002154 1.0e-107 393.3 272 74.3
p5.00_sc00001_p0843 Elaeis guineensis HOM05M000972 ORTHO05M002154 1.3e-107 392.9 259 78.0
Ma07_g11650 Musa acuminata HOM05M000972 ORTHO05M002154 2.9e-107 391.7 271 76.0
CDE08G0639 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 4.2e-106 387.9 285 72.3
Spipo20G0017900 Spirodela polyrhiza HOM05M000972 ORTHO05M002154 5.5e-106 387.5 269 72.5
Ma06_g05700 Musa acuminata HOM05M000972 ORTHO05M002154 7.2e-106 387.1 272 73.2
Aco028764 Ananas comosus HOM05M000972 ORTHO05M002154 9.4e-106 386.7 272 73.2
CDE02G2095 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 1.2e-105 386.3 285 71.9
p5.00_sc00031_p0139 Elaeis guineensis HOM05M000972 ORTHO05M002154 1.6e-105 386.0 297 69.4
SEGI_12492 Sequoiadendron giganteum HOM05M000972 ORTHO05M002154 1.6e-105 386.0 301 67.1
Asa7G05466 Allium sativum HOM05M000972 ORTHO05M002154 1.5e-103 379.4 273 70.7
HPP92_019220 Vanilla planifolia HOM05M000972 ORTHO05M002154 1.7e-102 375.9 269 74.0
Sobic.001G122500 Sorghum bicolor HOM05M000972 ORTHO05M002154 1.7e-99 365.9 270 70.7
Zosma01g19460 Zostera marina HOM05M000972 ORTHO05M002154 4.2e-98 361.3 294 66.0
Bradi1g10980 Brachypodium distachyon HOM05M000972 ORTHO05M002154 9.4e-98 360.1 276 68.8
Pahal.9G122400 Panicum hallii HOM05M000972 ORTHO05M002154 4.7e-97 357.8 260 71.9
V3.Lp_chr4_0G7314 Lolium perenne HOM05M000972 ORTHO05M002154 6.1e-97 357.5 274 68.2
Sevir.9G123300 Setaria viridis HOM05M000972 ORTHO05M002154 1.0e-96 356.7 261 71.3
Seita.9G124500 Setaria italica HOM05M000972 ORTHO05M002154 1.4e-96 356.3 261 71.3
Zm00001eb054370 Zea mays B73 HOM05M000972 ORTHO05M002154 2.3e-96 355.5 265 70.2
GWHGASIY018321 Secale cereale HOM05M000972 ORTHO05M002154 4.0e-96 354.8 266 68.0
Zm00007a00025475 Zea mays B104 HOM05M000972 ORTHO05M002154 6.8e-96 354.0 265 70.2
Horvu_MOREX_4H01G040600 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.2e-95 353.2 263 70.0
OsR498G0306887100.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 5.7e-95 350.9 251 72.1
TraesCS4A03G0705100 Triticum aestivum HOM05M000972 ORTHO05M002154 1.7e-94 349.4 240 73.3
Misin01G113500 Miscanthus sinensis HOM05M000972 ORTHO05M002154 3.7e-94 348.2 300 63.3
AET4Gv20077400 Aegilops tauschii HOM05M000972 ORTHO05M002154 1.1e-93 346.7 236 74.2
evm.TU.AsparagusV1_03.1443.V1.1 Asparagus officinalis HOM05M000972 ORTHO05M002154 1.1e-93 346.7 212 83.0
TraesCS4D03G0065000 Triticum aestivum HOM05M000972 ORTHO05M002154 1.1e-93 346.7 236 74.2
TRIDC4AG042400 Triticum dicoccoides HOM05M000972 ORTHO05M002154 1.4e-93 346.3 236 73.7
Ot_Chr4_g08069 Oropetium thomaeum HOM05M000972 ORTHO05M002154 1.8e-93 345.9 260 68.8
TraesCS4B03G0089900 Triticum aestivum HOM05M000972 ORTHO05M002154 5.4e-93 344.4 233 74.2
ATR0584G036 Amborella trichopoda HOM05M000972 ORTHO05M002154 2.0e-92 342.4 245 73.5
OB03G38200 Oryza brachyantha HOM05M000972 ORTHO05M002154 2.0e-92 342.4 261 70.1
OsKitaake03g306700 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 7.7e-92 340.5 227 74.9
Os03g0703900 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 7.7e-92 340.5 227 74.9
Sspon.01G0025880-1A Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.9e-91 338.6 273 66.3
ATR0665G380 Amborella trichopoda HOM05M000972 ORTHO05M002154 1.6e-89 332.8 237 67.5
EJB05_04967 Eragrostis curvula HOM05M000972 ORTHO05M002154 6.1e-89 330.9 257 66.9
Glyma.01G016800 Glycine max HOM05M000972 ORTHO05M002154 1.0e-88 330.1 238 67.6
Glyma.09G206000 Glycine max HOM05M000972 ORTHO05M002154 1.0e-88 330.1 238 67.6
TRIDC4BG006580 Triticum dicoccoides HOM05M000972 ORTHO05M002154 1.4e-88 329.7 210 78.1
Potri.001G140200 Populus trichocarpa HOM05M000972 ORTHO05M002154 3.0e-88 328.6 238 67.2
Potri.003G094000 Populus trichocarpa HOM05M000972 ORTHO05M002154 2.6e-87 325.5 238 68.1
Sspon.01G0025880-2B Saccharum spontaneum HOM05M000972 ORTHO05M002154 1.3e-86 323.2 270 65.6
Sspon.01G0025880-3D Saccharum spontaneum HOM05M000972 ORTHO05M002154 1.3e-86 323.2 270 65.6
Ma04_g19510 Musa acuminata HOM05M000972 ORTHO05M002154 1.7e-86 322.8 241 64.3
p5.00_sc00696_p0002 Elaeis guineensis HOM05M000972 ORTHO05M002154 2.8e-86 322.0 245 64.1
HPP92_014660 Vanilla planifolia HOM05M000972 ORTHO05M002154 3.7e-86 321.6 241 64.7
p5.00_sc00002_p0078 Elaeis guineensis HOM05M000972 ORTHO05M002154 4.9e-86 321.2 240 65.0
Spipo11G0009900 Spirodela polyrhiza HOM05M000972 ORTHO05M002154 6.3e-86 320.9 250 64.0
MBI09_g40925_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 8.3e-86 320.5 191 84.3
Asa6G02631 Allium sativum HOM05M000972 ORTHO05M002154 2.4e-85 318.9 238 64.7
evm.TU.AsparagusV1_10.113.V1.1 Asparagus officinalis HOM05M000972 ORTHO05M002154 5.4e-85 317.8 241 63.9
Solyc08g076670.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 1.2e-84 316.6 240 63.8
Aco012947 Ananas comosus HOM05M000972 ORTHO05M002154 1.6e-84 316.2 233 66.1
Ma04_g33900 Musa acuminata HOM05M000972 ORTHO05M002154 2.7e-84 315.5 244 62.7
GWHGAZTO026215 Oryza alta HOM05M000972 ORTHO05M002154 2.7e-84 315.5 243 68.7
Zosma06g01460 Zostera marina HOM05M000972 ORTHO05M002154 1.3e-83 313.2 233 65.7
TraesCS2B03G1184800 Triticum aestivum HOM05M000972 ORTHO05M002154 1.7e-83 312.8 273 59.3
AT4G17790 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 3.8e-83 311.6 237 64.1
Ma04_g12280 Musa acuminata HOM05M000972 ORTHO05M002154 5.0e-83 311.2 234 64.1
Horvu_MOREX_2H01G653800 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.1e-82 310.1 244 63.1
Zjn_sc00022.1.g04730.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 1.5e-82 309.7 241 62.7
OB04G30500 Oryza brachyantha HOM05M000972 ORTHO05M002154 1.9e-82 309.3 244 63.1
OsKitaake04g244300 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 1.9e-82 309.3 244 62.7
OsR498G0409196800.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 1.9e-82 309.3 244 62.7
Os04g0592600 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 1.9e-82 309.3 244 62.7
AET2Gv20988400 Aegilops tauschii HOM05M000972 ORTHO05M002154 3.3e-82 308.5 239 64.0
GWHGASIY011113 Secale cereale HOM05M000972 ORTHO05M002154 3.3e-82 308.5 244 62.7
TraesCS2D03G1000700 Triticum aestivum HOM05M000972 ORTHO05M002154 3.3e-82 308.5 239 64.0
Ma09_g23780 Musa acuminata HOM05M000972 ORTHO05M002154 4.3e-82 308.1 236 64.0
PH02Gene46303 Phyllostachys edulis HOM05M000972 ORTHO05M002154 4.3e-82 308.1 244 62.3
Seita.1G280500 Setaria italica HOM05M000972 ORTHO05M002154 4.3e-82 308.1 241 63.5
Sevir.1G286000 Setaria viridis HOM05M000972 ORTHO05M002154 4.3e-82 308.1 241 63.5
TraesCS2A03G1060400 Triticum aestivum HOM05M000972 ORTHO05M002154 5.6e-82 307.8 239 63.6
Ot_Chr6_g01546 Oropetium thomaeum HOM05M000972 ORTHO05M002154 7.3e-82 307.4 244 62.3
GWHGAORA021627 Cenchrus purpureus HOM05M000972 ORTHO05M002154 9.5e-82 307.0 244 62.3
Zm00001eb072290 Zea mays B73 HOM05M000972 ORTHO05M002154 1.2e-81 306.6 244 61.9
Zm00007a00016099 Zea mays B104 HOM05M000972 ORTHO05M002154 1.2e-81 306.6 244 61.9
GWHGAORA062834 Cenchrus purpureus HOM05M000972 ORTHO05M002154 1.6e-81 306.2 244 61.9
EJB05_19593 Eragrostis curvula HOM05M000972 ORTHO05M002154 1.6e-81 306.2 241 60.6
OB02G35850 Oryza brachyantha HOM05M000972 ORTHO05M002154 1.6e-81 306.2 241 62.7
OsKitaake02g294400 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 1.6e-81 306.2 241 62.7
Os02g0693500 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 1.6e-81 306.2 241 62.7
GWHGAZTO080877 Oryza alta HOM05M000972 ORTHO05M002154 2.1e-81 305.8 244 62.3
Seita.7G219500 Setaria italica HOM05M000972 ORTHO05M002154 2.1e-81 305.8 244 61.9
GWHGAORA021641 Cenchrus purpureus HOM05M000972 ORTHO05M002154 2.8e-81 305.4 244 61.9
GWHGAORA024879 Cenchrus purpureus HOM05M000972 ORTHO05M002154 2.8e-81 305.4 241 62.7
OsR498G0204580600.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 3.6e-81 305.1 241 62.2
Sspon.07G0015700-1A Saccharum spontaneum HOM05M000972 ORTHO05M002154 4.7e-81 304.7 244 61.5
Sspon.07G0015700-2B Saccharum spontaneum HOM05M000972 ORTHO05M002154 4.7e-81 304.7 244 61.5
Sspon.07G0015700-3C Saccharum spontaneum HOM05M000972 ORTHO05M002154 4.7e-81 304.7 244 61.5
GWHGAZTO071857 Oryza alta HOM05M000972 ORTHO05M002154 6.1e-81 304.3 241 61.8
PH02Gene03811 Phyllostachys edulis HOM05M000972 ORTHO05M002154 6.1e-81 304.3 242 62.4
Zm00001eb429920 Zea mays B73 HOM05M000972 ORTHO05M002154 6.1e-81 304.3 244 61.1
Zm00007a00017569 Zea mays B104 HOM05M000972 ORTHO05M002154 6.1e-81 304.3 244 61.1
EJB05_39493 Eragrostis curvula HOM05M000972 ORTHO05M002154 8.0e-81 303.9 244 61.5
Sevir.7G231200 Setaria viridis HOM05M000972 ORTHO05M002154 8.0e-81 303.9 237 63.3
SMO118G0527 Selaginella moellendorffii HOM05M000972 ORTHO05M002154 1.0e-80 303.5 248 61.3
MBI09_g01932_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 1.4e-80 303.1 177 85.9
Sobic.006G198500 Sorghum bicolor HOM05M000972 ORTHO05M002154 1.4e-80 303.1 244 61.1
Pahal.7G273400 Panicum hallii HOM05M000972 ORTHO05M002154 1.8e-80 302.8 244 61.1
Bradi5g20030 Brachypodium distachyon HOM05M000972 ORTHO05M002154 2.3e-80 302.4 244 61.1
Dexi1A01G0023840 Digitaria exilis HOM05M000972 ORTHO05M002154 2.3e-80 302.4 241 61.4
Mapoly0001s0510 Marchantia polymorpha HOM05M000972 ORTHO05M002154 3.0e-80 302.0 231 65.4
Misin11G201100 Miscanthus sinensis HOM05M000972 ORTHO05M002154 3.0e-80 302.0 244 60.7
CALSI_Maker00013478 Calamus simplicifolius HOM05M000972 ORTHO05M002154 4.0e-80 301.6 270 63.0
Dexi1B01G0022900 Digitaria exilis HOM05M000972 ORTHO05M002154 4.0e-80 301.6 240 61.7
Ot_Chr1_g19375 Oropetium thomaeum HOM05M000972 ORTHO05M002154 6.8e-80 300.8 241 60.2
PH02Gene29985 Phyllostachys edulis HOM05M000972 ORTHO05M002154 6.8e-80 300.8 221 70.6
Pahal.1G356000 Panicum hallii HOM05M000972 ORTHO05M002154 2.6e-79 298.9 241 61.4
MBI04_g20347_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 4.4e-79 298.1 238 64.7
GWHGAZTO076158 Oryza alta HOM05M000972 ORTHO05M005533 4.4e-79 298.1 218 70.2
CALSI_Maker00034794 Calamus simplicifolius HOM05M000972 ORTHO05M002154 1.3e-78 296.6 209 67.5
Horvu_MOREX_2H01G323900 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.3e-78 296.6 244 61.1
TRIDC2BG068150 Triticum dicoccoides HOM05M000972 ORTHO05M002154 1.7e-78 296.2 223 65.0
Sspon.04G0023440-2C Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.2e-78 295.8 241 60.2
Sspon.04G0023440-3D Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.2e-78 295.8 241 60.2
Sobic.004G274700 Sorghum bicolor HOM05M000972 ORTHO05M002154 2.2e-78 295.8 241 60.2
DDU613G0407 Dioscorea dumetorum HOM05M000972 ORTHO05M002154 3.7e-78 295.0 218 66.5
AagrBONN_evm.TU.Sc2ySwM_362.1263 Anthoceros agrestis HOM05M000972 ORTHO05M002154 8.3e-78 293.9 247 58.7
SEGI_15843 Sequoiadendron giganteum HOM05M000972 ORTHO05M002154 8.3e-78 293.9 203 72.4
Misin07G451600 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.4e-77 293.1 241 59.3
TRIDC2AG063960 Triticum dicoccoides HOM05M000972 ORTHO05M002154 3.2e-77 292.0 217 65.4
TRITD2Bv1G217800 Triticum turgidum HOM05M000972 ORTHO05M006735 5.4e-77 291.2 223 65.9
TRITD2Av1G255400 Triticum turgidum HOM05M000972 ORTHO05M006735 1.2e-76 290.0 217 66.4
Sspon.04G0023440-1B Saccharum spontaneum HOM05M000972 ORTHO05M002154 3.5e-76 288.5 253 57.3
Zm00007a00022796 Zea mays B104 HOM05M000972 ORTHO05M002154 5.9e-76 287.7 252 57.1
Pp3c16_5420 Physcomitrium patens HOM05M000972 ORTHO05M002154 5.0e-75 284.6 255 53.7
Dexi7A01G0017320 Digitaria exilis HOM05M000972 ORTHO05M002154 5.6e-74 281.2 212 64.6
Dexi7B01G0017980 Digitaria exilis HOM05M000972 ORTHO05M002154 1.2e-73 280.0 212 64.2
Misin12G216300 Miscanthus sinensis HOM05M000972 ORTHO05M002154 8.0e-73 277.3 244 58.6
Sspon.07G0015700-4D Saccharum spontaneum HOM05M000972 ORTHO05M002154 8.0e-73 277.3 244 58.2
Pp3c5_9530 Physcomitrium patens HOM05M000972 ORTHO05M002154 1.0e-72 276.9 236 56.8
CDE06G1585 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 1.7e-70 269.6 207 63.3
Zm00001eb251300 Zea mays B73 HOM05M000972 ORTHO05M002154 3.2e-69 265.4 242 56.2
GWHGAZTO031193 Oryza alta HOM05M000972 ORTHO05M002154 9.2e-69 263.8 193 66.8
Horvu_MOREX_2H01G341600 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.7e-67 259.6 199 63.8
Misin08G246900 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.5e-66 256.5 241 55.2
PH02Gene09955 Phyllostachys edulis HOM05M000972 ORTHO05M005533 1.6e-65 253.1 150 84.0
Horvu_MOREX_7H01G307800 Hordeum vulgare HOM05M000972 ORTHO05M002154 6.2e-65 251.1 244 54.5
GWHGAORA051299 Cenchrus purpureus HOM05M000972 ORTHO05M002154 8.1e-65 250.8 265 55.1
HPP92_027698 Vanilla planifolia HOM05M000972 ORTHO05M002154 2.2e-62 242.7 169 74.0
AagrBONN_evm.TU.Sc2ySwM_368.1598 Anthoceros agrestis HOM05M000972 ORTHO05M002154 1.6e-60 236.5 238 50.8
Horvu_MOREX_7H01G115700 Hordeum vulgare HOM05M000972 ORTHO05M002154 8.6e-59 230.7 153 75.2
CALSI_Maker00018117 Calamus simplicifolius HOM05M000972 ORTHO05M002154 9.9e-55 217.2 156 69.9
Pp3c27_2420 Physcomitrium patens HOM05M000972 ORTHO05M002154 9.9e-55 217.2 241 46.1
GWHGAORA060317 Cenchrus purpureus HOM05M000972 ORTHO05M002154 5.6e-50 201.4 244 47.1
Dexi9B01G0016420 Digitaria exilis HOM05M000972 ORTHO05M002154 8.1e-49 197.6 265 47.2
Dexi9A01G0011900 Digitaria exilis HOM05M000972 ORTHO05M002154 1.8e-48 196.4 265 46.8
SMO339G0070 Selaginella moellendorffii HOM05M000972 ORTHO05M002154 3.0e-43 179.1 202 44.6
Zjn_sc00007.1.g08270.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 3.9e-43 178.7 252 41.7
PRCOL_00001717 Prasinoderma coloniale HOM05M000972 ORTHO05M002154 6.6e-43 177.9 202 46.0
Dexi5B01G0040090 Digitaria exilis HOM05M000972 ORTHO05M002154 3.1e-40 169.1 157 54.8
Mapoly0031s0181 Marchantia polymorpha HOM05M000972 ORTHO05M002154 4.5e-39 165.2 199 41.7
Mapoly0031s0177 Marchantia polymorpha HOM05M000972 ORTHO05M002154 7.6e-39 164.5 218 38.5
Zjn_sc00023.1.g01770.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 8.4e-38 161.0 244 39.3
Zjn_sc00004.1.g08780.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 1.4e-37 160.2 244 39.3
CALSI_Maker00018115 Calamus simplicifolius HOM05M000972 ORTHO05M002154 3.2e-37 159.1 109 78.0
CALSI_Maker00013243 Calamus simplicifolius HOM05M000972 ORTHO05M002154 3.5e-36 155.6 95 84.2
AagrBONN_evm.TU.Sc2ySwM_344.2249 Anthoceros agrestis HOM05M001832 ORTHO05M001858 1.3e-33 147.1 188 41.0
HPP92_027705 Vanilla planifolia HOM05M000972 ORTHO05M002154 2.9e-30 136.0 109 66.1
CBR_g6384 Chara braunii HOM05M000972 ORTHO05M002154 1.4e-29 133.7 177 41.2
GWHGAORA062883 Cenchrus purpureus HOM05M000972 ORTHO05M002154 4.2e-29 132.1 205 40.0
GWHGAORA019327 Cenchrus purpureus HOM05M000972 ORTHO05M002154 3.5e-28 129.0 156 50.0
Zjn_sc00013.1.g01440.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 8.2e-09 64.7 45 68.9


User provided reference genes

Program Settings