Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g014750.2 Solanum lycopersicum HOM05M002248 ORTHO05M005982 9.6e-175 615.9 304 100.0
Spipo24G0020200 Spirodela polyrhiza HOM05M002248 ORTHO05M005982 6.6e-107 390.6 333 58.9
Potri.005G067100 Populus trichocarpa HOM05M002248 ORTHO05M005982 3.3e-106 388.3 326 61.0
DDU417G0009 Dioscorea dumetorum HOM05M002248 ORTHO05M005982 9.5e-106 386.7 297 64.3
Asa2G06418 Allium sativum HOM05M002248 ORTHO05M005982 5.8e-103 377.5 327 58.1
CALSI_Maker00020671 Calamus simplicifolius HOM05M002248 ORTHO05M005982 7.5e-103 377.1 332 58.4
Aco004200 Ananas comosus HOM05M002867 ORTHO05M005982 3.2e-101 371.7 335 57.0
DDU444G0154 Dioscorea dumetorum HOM05M002248 ORTHO05M005982 7.0e-101 370.5 333 57.1
p5.00_sc00436_p0001 Elaeis guineensis HOM05M002248 ORTHO05M005982 1.2e-100 369.8 337 57.0
ATR1001G007 Amborella trichopoda HOM05M002248 ORTHO05M005982 3.5e-100 368.2 325 56.9
Ma06_g03180 Musa acuminata HOM05M002248 ORTHO05M005982 7.8e-100 367.1 330 57.0
Ot_Chr4_g00174 Oropetium thomaeum HOM05M002248 ORTHO05M005982 7.8e-100 367.1 331 56.8
Glyma.06G155600 Glycine max HOM05M002248 ORTHO05M005982 1.3e-99 366.3 326 56.7
OsKitaake03g050800 Oryza sativa Kitaake HOM05M002248 ORTHO05M005982 2.3e-99 365.5 331 55.9
OsR498G0305280800.01 Oryza sativa ssp. indica HOM05M002248 ORTHO05M005982 2.3e-99 365.5 331 55.9
Os03g0165000 Oryza sativa ssp. japonica HOM05M002248 ORTHO05M005982 2.3e-99 365.5 331 55.9
OB03G14870 Oryza brachyantha HOM05M002248 ORTHO05M005982 3.9e-99 364.8 331 55.9
GWHGAZTO022278 Oryza alta HOM05M002248 ORTHO05M005982 6.6e-99 364.0 331 55.6
OsR498G0916832100.01 Oryza sativa ssp. indica HOM05M002248 ORTHO05M005982 8.6e-99 363.6 331 55.6
CDE09G0651 Ceratophyllum demersum HOM05M002248 ORTHO05M005982 1.9e-98 362.5 374 50.5
Seita.9G529300 Setaria italica HOM05M002248 ORTHO05M005982 3.3e-98 361.7 331 55.6
Zm00007a00004886 Zea mays B104 HOM05M002248 ORTHO05M005982 3.3e-98 361.7 317 56.8
Pahal.9G593800 Panicum hallii HOM05M002248 ORTHO05M005982 4.3e-98 361.3 331 55.6
Sspon.01G0003730-4D Saccharum spontaneum HOM05M002248 ORTHO05M005982 4.3e-98 361.3 333 55.3
Sobic.001G494300 Sorghum bicolor HOM05M002248 ORTHO05M005982 7.3e-98 360.5 333 55.3
Misin02G465200 Miscanthus sinensis HOM05M002248 ORTHO05M005982 9.5e-98 360.1 333 55.0
Sspon.01G0003730-3C Saccharum spontaneum HOM05M002248 ORTHO05M005982 9.5e-98 360.1 333 55.0
GWHGAZTO000646 Oryza alta HOM05M002248 ORTHO05M005982 2.1e-97 359.0 331 55.3
PH02Gene40059 Phyllostachys edulis HOM05M002248 ORTHO05M005982 2.8e-97 358.6 333 54.4
EJB05_07920 Eragrostis curvula HOM05M002248 ORTHO05M005982 3.6e-97 358.2 329 55.9
SEGI_35171 Sequoiadendron giganteum HOM05M002248 ORTHO05M005982 1.1e-96 356.7 325 56.3
Sspon.01G0003730-2B Saccharum spontaneum HOM05M002248 ORTHO05M005982 4.0e-96 354.8 325 55.1
Zm00001eb005010 Zea mays B73 HOM05M002248 ORTHO05M005982 5.2e-96 354.4 333 54.4
GWHGAORA026328 Cenchrus purpureus HOM05M002248 ORTHO05M005982 8.9e-96 353.6 328 54.9
GWHGAORA054589 Cenchrus purpureus HOM05M002248 ORTHO05M005982 1.5e-95 352.8 308 58.4
V3.Lp_chr4_0G25726 Lolium perenne HOM05M002248 ORTHO05M005982 2.6e-95 352.1 329 55.0
Horvu_MOREX_4H01G428000 Hordeum vulgare HOM05M002248 ORTHO05M005982 7.5e-95 350.5 331 55.0
GWHGASIY037807 Secale cereale HOM05M002248 ORTHO05M005982 9.9e-95 350.1 329 54.7
TraesCS4A03G0042000 Triticum aestivum HOM05M002248 ORTHO05M005982 8.3e-94 347.1 329 54.1
TraesCS4B03G0742200 Triticum aestivum HOM05M002248 ORTHO05M005982 8.3e-94 347.1 329 54.1
TRIDC4AG003180 Triticum dicoccoides HOM05M002248 ORTHO05M005982 8.3e-94 347.1 329 54.1
TRITD4Av1G007250 Triticum turgidum HOM05M002248 ORTHO05M005982 8.3e-94 347.1 329 54.1
TRITD4Bv1G166850 Triticum turgidum HOM05M002248 ORTHO05M005982 8.3e-94 347.1 329 54.1
AT5G63920 Arabidopsis thaliana HOM05M002248 ORTHO05M005982 1.1e-93 346.7 334 53.9
CALSI_Maker00030685 Calamus simplicifolius HOM05M002248 ORTHO05M005982 2.7e-92 342.0 299 56.5
Misin01G471000 Miscanthus sinensis HOM05M002248 ORTHO05M005982 2.7e-92 342.0 332 53.3
AET4Gv20683400 Aegilops tauschii HOM05M002248 ORTHO05M005982 5.1e-91 337.8 322 53.4
TRIDC4BG048340 Triticum dicoccoides HOM05M002248 ORTHO05M005982 2.1e-89 332.4 329 52.3
Dexi9A01G0046180 Digitaria exilis HOM05M002248 ORTHO05M005982 4.4e-87 324.7 258 61.2
Dexi9B01G0045520 Digitaria exilis HOM05M002248 ORTHO05M005982 4.4e-87 324.7 258 61.2
MBI07_g33104_MAGBIO Magnolia biondii HOM05M002248 ORTHO05M005982 1.1e-85 320.1 330 54.2
Pp3c21_9710 Physcomitrium patens HOM05M002248 ORTHO05M005982 2.7e-84 315.5 327 50.5
Mapoly0113s0011 Marchantia polymorpha HOM05M002248 ORTHO05M005982 6.0e-84 314.3 326 50.6
MBI07_g47060_MAGBIO Magnolia biondii HOM05M002248 ORTHO05M005982 2.1e-76 289.3 332 50.6
SMO114G0082 Selaginella moellendorffii HOM05M002248 ORTHO05M005982 6.0e-76 287.7 325 45.5
Zosma06g23770 Zostera marina HOM05M002248 ORTHO05M005982 2.4e-72 275.8 272 50.7
Sevir.9G533800 Setaria viridis HOM05M002248 ORTHO05M005982 3.5e-68 261.9 148 79.7
evm.TU.AsparagusV1_03.2816.V1.1 Asparagus officinalis HOM05M002248 ORTHO05M005982 4.2e-61 238.4 148 73.6
HPP92_005923 Vanilla planifolia HOM05M002248 ORTHO05M005982 2.1e-60 236.1 132 78.8
Seita.1G115200 Setaria italica HOM05M002248 ORTHO05M005982 1.3e-59 233.4 311 42.8
GWHGAORA054594 Cenchrus purpureus HOM05M002248 ORTHO05M005982 6.2e-57 224.6 319 44.5
Bradi1g74120 Brachypodium distachyon HOM05M002248 ORTHO05M005982 1.4e-56 223.4 132 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05M002248 ORTHO05M005982 5.8e-55 218.0 148 68.2
PRCOL_00003192 Prasinoderma coloniale HOM05M002248 ORTHO05M005982 4.2e-53 211.8 333 38.4
HPP92_005922 Vanilla planifolia HOM05M002248 ORTHO05M005982 5.5e-53 211.5 330 41.5
MCO11G433 Micromonas commoda HOM05M002248 ORTHO05M005982 3.2e-45 185.7 334 34.7
HPP92_005924 Vanilla planifolia HOM05M002248 ORTHO05M005982 3.7e-33 145.6 100 70.0
Zjn_sc00003.1.g11420.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M002248 ORTHO05M005982 1.4e-32 143.7 103 66.0
CBR_g75 Chara braunii HOM05M000008 ORTHO05M000015 4.2e-29 132.1 108 57.4
Mapoly0014s0219 Marchantia polymorpha HOM05M002248 ORTHO05M007057 3.9e-27 125.6 328 28.4
Misin04G236400 Miscanthus sinensis HOM05M002248 ORTHO05M007057 1.3e-25 120.6 326 27.3
Sobic.002G254800 Sorghum bicolor HOM05M002248 ORTHO05M007057 1.3e-25 120.6 324 27.2
Glyma.11G253100 Glycine max HOM05M002248 ORTHO05M007057 1.7e-25 120.2 322 26.1
Sspon.02G0011100-1A Saccharum spontaneum HOM05M002248 ORTHO05M007057 2.2e-25 119.8 326 27.0
p5.00_sc00246_p0017 Elaeis guineensis HOM05M002248 ORTHO05M007057 3.7e-25 119.0 326 27.0
OB09G21890 Oryza brachyantha HOM05M002248 ORTHO05M007057 3.7e-25 119.0 326 26.7
AT2G32000 Arabidopsis thaliana HOM05M002248 ORTHO05M007057 8.2e-25 117.9 331 26.0
PH02Gene12656 Phyllostachys edulis HOM05M002248 ORTHO05M007057 8.2e-25 117.9 326 26.7
CDE05G0942 Ceratophyllum demersum HOM05M002248 ORTHO05M007057 1.1e-24 117.5 333 25.5
GWHGAZTO098572 Oryza alta HOM05M002248 ORTHO05M007057 1.8e-24 116.7 325 27.1
Zosma04g02600 Zostera marina HOM05M002248 ORTHO05M007057 2.4e-24 116.3 325 26.2
EJB05_43624 Eragrostis curvula HOM05M002248 ORTHO05M007057 4.1e-24 115.5 326 26.4
OsKitaake09g153600 Oryza sativa Kitaake HOM05M002248 ORTHO05M007057 4.1e-24 115.5 325 27.1
OsR498G0917754700.01 Oryza sativa ssp. indica HOM05M002248 ORTHO05M007057 4.1e-24 115.5 325 27.1
Os09g0500600 Oryza sativa ssp. japonica HOM05M002248 ORTHO05M007057 4.1e-24 115.5 325 27.1
Pp3c8_22620 Physcomitrium patens HOM05M002248 ORTHO05M007057 5.3e-24 115.2 327 25.7
Sevir.2G272700 Setaria viridis HOM05M002248 ORTHO05M007057 5.3e-24 115.2 326 26.4
GWHGAORA007673 Cenchrus purpureus HOM05M002248 ORTHO05M007057 7.0e-24 114.8 326 26.1
GWHGAORA048017 Cenchrus purpureus HOM05M002248 ORTHO05M007057 7.0e-24 114.8 326 26.4
Pahal.2G320400 Panicum hallii HOM05M002248 ORTHO05M007057 7.0e-24 114.8 326 26.1
Potri.014G148800 Populus trichocarpa HOM05M002248 ORTHO05M007057 7.0e-24 114.8 333 25.8
GWHGAORA048156 Cenchrus purpureus HOM05M002248 ORTHO05M007057 9.1e-24 114.4 326 26.1
GWHGAZTO052149 Oryza alta HOM05M002248 ORTHO05M007057 9.1e-24 114.4 324 26.9
AagrBONN_evm.TU.Sc2ySwM_228.2256 Anthoceros agrestis HOM05M002248 ORTHO05M007057 2.6e-23 112.8 335 27.5
Seita.2G262400 Setaria italica HOM05M002248 ORTHO05M007057 2.6e-23 112.8 326 26.1
Ot_Chr2_g24271 Oropetium thomaeum HOM05M002248 ORTHO05M007057 3.5e-23 112.5 326 25.8
Ma08_g32280 Musa acuminata HOM05M002248 ORTHO05M007057 4.5e-23 112.1 326 25.5
SEGI_13382 Sequoiadendron giganteum HOM05M002248 ORTHO05M007057 2.2e-22 109.8 327 26.3
Spipo13G0030300 Spirodela polyrhiza HOM05M002248 ORTHO05M007057 8.5e-22 107.8 326 26.7
Dexi2B01G0020730 Digitaria exilis HOM05M002248 ORTHO05M007057 1.9e-21 106.7 338 25.1
ATR0686G228 Amborella trichopoda HOM05M002248 ORTHO05M007057 2.5e-21 106.3 326 24.8
Sspon.02G0011100-2B Saccharum spontaneum HOM05M002248 ORTHO05M007057 7.2e-21 104.8 288 25.3
Solyc09g097880.4 Solanum lycopersicum HOM05M002248 ORTHO05M007057 4.7e-20 102.1 325 25.2
Bradi4g34290 Brachypodium distachyon HOM05M002248 ORTHO05M007057 3.0e-19 99.4 148 37.2
V3.Lp_chr5_0G15852 Lolium perenne HOM05M002248 ORTHO05M007057 4.0e-19 99.0 155 36.1
MCO11G923 Micromonas commoda HOM05M002248 ORTHO05M007057 4.0e-19 99.0 158 37.3
Horvu_MOREX_5H01G440000 Hordeum vulgare HOM05M002248 ORTHO05M007057 5.2e-19 98.6 155 36.1
TraesCS5A03G0683500 Triticum aestivum HOM05M002248 ORTHO05M007057 5.2e-19 98.6 155 36.1
TraesCS5B03G0721300 Triticum aestivum HOM05M002248 ORTHO05M007057 5.2e-19 98.6 148 36.5
TRIDC5BG045800 Triticum dicoccoides HOM05M002248 ORTHO05M007057 5.2e-19 98.6 148 36.5
TRITD5Av1G164660 Triticum turgidum HOM05M002248 ORTHO05M007057 5.2e-19 98.6 155 36.1
TRITD5Bv1G155530 Triticum turgidum HOM05M002248 ORTHO05M007057 5.2e-19 98.6 148 36.5
GWHGASIY026982 Secale cereale HOM05M002248 ORTHO05M007057 6.8e-19 98.2 155 36.1
TraesCS5D03G0652800 Triticum aestivum HOM05M002248 ORTHO05M007057 6.8e-19 98.2 155 36.1
HPP92_011791 Vanilla planifolia HOM05M002248 ORTHO05M007057 6.8e-19 98.2 148 37.2
AET5Gv20649500 Aegilops tauschii HOM05M002248 ORTHO05M007057 1.2e-18 97.4 155 36.1
Zm00001eb317420 Zea mays B73 HOM05M002248 ORTHO05M007057 1.5e-18 97.1 148 35.8
Zm00007a00043317 Zea mays B104 HOM05M002248 ORTHO05M007057 1.5e-18 97.1 148 35.8
Aco004557 Ananas comosus HOM05M002248 ORTHO05M007057 2.0e-18 96.7 179 33.0
Dexi2A01G0022270 Digitaria exilis HOM05M002248 ORTHO05M007057 2.0e-18 96.7 233 27.0
CALSI_Maker00037817 Calamus simplicifolius HOM05M002248 ORTHO05M007057 3.4e-18 95.9 310 25.2
SMO347G0440 Selaginella moellendorffii HOM05M002248 ORTHO05M007057 3.4e-18 95.9 303 24.8
Cre17.g725100 Chlamydomonas reinhardtii HOM05M002248 ORTHO05M007057 4.4e-18 95.5 149 37.6
MBI07_g19432_MAGBIO Magnolia biondii HOM05M002248 ORTHO05M007057 7.5e-18 94.7 148 35.1
Asa2G06176 Allium sativum HOM05M002248 ORTHO05M007057 1.3e-17 94.0 149 34.9
CBR_g21883 Chara braunii HOM05M002248 ORTHO05M007057 6.3e-17 91.7 132 37.1
DDU879G0400 Dioscorea dumetorum HOM05M002248 ORTHO05M007057 1.8e-16 90.1 148 34.5
Asa6G00717 Allium sativum HOM05M002248 ORTHO05M007057 2.5e-13 79.7 219 26.5
Asa6G00722 Allium sativum HOM05M002248 ORTHO05M007057 4.0e-11 72.4 223 24.7
Zm00007a00045958 Zea mays B104 HOM05M002248 ORTHO05M007057 6.3e-09 65.1 104 33.7
Misin03G215900 Miscanthus sinensis HOM05M002248 ORTHO05M007057 9.1e-08 61.2 87 34.5


User provided reference genes

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