Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g078030.3 Solanum lycopersicum HOM05M001715 ORTHO05M001691 1.9e-39 164.5 76 100.0
Glyma.19G015500 Glycine max HOM05M002520 ORTHO05M002804 5.3e-13 76.6 75 46.7
CALSI_Maker00044616 Calamus simplicifolius HOM05M002520 ORTHO05M002804 7.6e-12 72.8 64 51.6
Glyma.13G068400 Glycine max HOM05M002520 ORTHO05M002804 2.2e-11 71.2 57 50.9
HPP92_015713 Vanilla planifolia HOM05M002520 ORTHO05M002804 2.2e-11 71.2 68 41.2
p5.00_sc00312_p0017 Elaeis guineensis HOM05M002520 ORTHO05M002804 2.9e-11 70.9 55 52.7
HPP92_026648 Vanilla planifolia HOM05M002520 ORTHO05M002804 2.9e-11 70.9 68 42.6
CALSI_Maker00037526 Calamus simplicifolius HOM05M002520 ORTHO05M002804 3.8e-11 70.5 73 41.1
p5.00_sc00372_p0007 Elaeis guineensis HOM05M002520 ORTHO05M002804 3.8e-11 70.5 66 47.0
MBI14_g19442_MAGBIO Magnolia biondii HOM05M001715 ORTHO05M001691 8.4e-11 69.3 61 49.2
MBI16_g27293_MAGBIO Magnolia biondii HOM05M001715 ORTHO05M001691 1.9e-10 68.2 69 47.8
Potri.001G037400 Populus trichocarpa HOM05M001715 ORTHO05M001691 4.2e-10 67.0 65 44.6
Ma04_g14160 Musa acuminata HOM05M002520 ORTHO05M002804 5.4e-10 66.6 74 40.5
Solyc03g117840.4 Solanum lycopersicum HOM05M001715 ORTHO05M001691 5.4e-10 66.6 60 48.3
evm.TU.AsparagusV1_07.2977.V1.1 Asparagus officinalis HOM05M002520 ORTHO05M001691 1.6e-09 65.1 53 50.9
HPP92_012494 Vanilla planifolia HOM05M002520 ORTHO05M002804 2.1e-09 64.7 68 38.2
AT5G43150 Arabidopsis thaliana HOM05M002520 ORTHO05M002804 3.5e-09 63.9 80 37.5
Ma04_g29780 Musa acuminata HOM05M002520 ORTHO05M002804 6.0e-09 63.2 68 42.6
EJB05_39985 Eragrostis curvula HOM05M001715 ORTHO05M001691 1.8e-08 61.6 77 39.0
Solyc06g068620.3 Solanum lycopersicum HOM05M001715 ORTHO05M001691 1.8e-08 61.6 62 43.5
Aco008545 Ananas comosus HOM05M002520 ORTHO05M002804 2.3e-08 61.2 75 38.7
Dexi7A01G0021590 Digitaria exilis HOM05M001715 ORTHO05M001691 3.0e-08 60.8 68 42.6
Dexi7B01G0022290 Digitaria exilis HOM05M001715 ORTHO05M001691 3.0e-08 60.8 68 42.6
PH02Gene40473 Phyllostachys edulis HOM05M001715 ORTHO05M001691 3.0e-08 60.8 68 42.6
MBI16_g22819_MAGBIO Magnolia biondii HOM05M002520 ORTHO05M002804 3.9e-08 60.5 57 43.9
Potri.002G119700 Populus trichocarpa HOM05M002520 ORTHO05M002804 3.9e-08 60.5 63 42.9
GWHGAORA063447 Cenchrus purpureus HOM05M001715 ORTHO05M001691 6.7e-08 59.7 68 41.2
Ma01_g01010 Musa acuminata HOM05M001715 ORTHO05M001691 6.7e-08 59.7 72 43.1
CDE02G3789 Ceratophyllum demersum HOM05M001715 ORTHO05M001691 8.7e-08 59.3 71 40.8
Ma07_g00620 Musa acuminata HOM05M002520 ORTHO05M002804 8.7e-08 59.3 55 45.5
Potri.003G187500 Populus trichocarpa HOM05M001715 ORTHO05M001691 8.7e-08 59.3 60 45.0
AET6Gv20391300 Aegilops tauschii HOM05M001715 ORTHO05M001691 1.1e-07 58.9 70 45.7
TraesCS4D03G0612800 Triticum aestivum HOM05M002520 ORTHO05M002804 1.1e-07 58.9 67 38.8
TraesCS6A03G0366300 Triticum aestivum HOM05M001715 ORTHO05M001691 1.1e-07 58.9 70 45.7
TraesCS6D03G0319000 Triticum aestivum HOM05M001715 ORTHO05M001691 1.1e-07 58.9 70 45.7
TRITD6Av1G057020 Triticum turgidum HOM05M001715 ORTHO05M001691 1.1e-07 58.9 70 45.7
Aco004908 Ananas comosus HOM05M002520 ORTHO05M002804 1.5e-07 58.5 69 43.5
Pahal.7G322100 Panicum hallii HOM05M001715 ORTHO05M001691 1.5e-07 58.5 68 41.2
Misin11G172900 Miscanthus sinensis HOM05M001715 ORTHO05M001691 1.9e-07 58.2 68 42.6
Spipo5G0004500 Spirodela polyrhiza HOM05M001715 ORTHO05M001691 1.9e-07 58.2 55 43.6
Zm00001eb067680 Zea mays B73 HOM05M001715 ORTHO05M001691 1.9e-07 58.2 71 42.3
Dexi7A01G0018010 Digitaria exilis HOM05M001715 ORTHO05M001691 2.5e-07 57.8 68 45.6
Glyma.13G371800 Glycine max HOM05M001715 ORTHO05M001691 2.5e-07 57.8 59 44.1
Zm00007a00011968 Zea mays B104 HOM05M001715 ORTHO05M001691 2.5e-07 57.8 71 42.3
AET4Gv20636100 Aegilops tauschii HOM05M002520 ORTHO05M002804 3.3e-07 57.4 66 37.9
Bradi3g05703 Brachypodium distachyon HOM05M001715 ORTHO05M001691 3.3e-07 57.4 69 43.5
GWHGAORA020967 Cenchrus purpureus HOM05M001715 ORTHO05M001691 3.3e-07 57.4 74 40.5
OsKitaake04g251500 Oryza sativa Kitaake HOM05M001715 ORTHO05M001691 3.3e-07 57.4 73 42.5
OsR498G0409229200.01 Oryza sativa ssp. indica HOM05M001715 ORTHO05M001691 3.3e-07 57.4 73 42.5
Os04g0603400 Oryza sativa ssp. japonica HOM05M001715 ORTHO05M001691 3.3e-07 57.4 73 42.5
PH02Gene02237 Phyllostachys edulis HOM05M001715 ORTHO05M001691 3.3e-07 57.4 76 40.8
Seita.3G023300 Setaria italica HOM05M001715 ORTHO05M001691 3.3e-07 57.4 68 39.7
Sevir.3G024100 Setaria viridis HOM05M001715 ORTHO05M001691 3.3e-07 57.4 68 39.7
Spipo12G0057300 Spirodela polyrhiza HOM05M001715 ORTHO05M001691 3.3e-07 57.4 73 39.7
TraesCS6B03G0459000 Triticum aestivum HOM05M001715 ORTHO05M001691 3.3e-07 57.4 70 44.3
TRIDC6BG027050 Triticum dicoccoides HOM05M001715 ORTHO05M001691 3.3e-07 57.4 70 44.3
TRITD6Bv1G067410 Triticum turgidum HOM05M001715 ORTHO05M001691 3.3e-07 57.4 70 44.3
Ma07_g27800 Musa acuminata HOM05M002520 ORTHO05M002804 4.3e-07 57.0 54 40.7
Ot_Chr6_g01933 Oropetium thomaeum HOM05M001715 ORTHO05M001691 4.3e-07 57.0 68 42.6
SEGI_02946 Sequoiadendron giganteum HOM05M001715 ORTHO05M001691 4.3e-07 57.0 56 46.4
TraesCS4A03G0094700 Triticum aestivum HOM05M002520 ORTHO05M002804 4.3e-07 57.0 66 37.9
TRITD4Av1G017860 Triticum turgidum HOM05M002520 ORTHO05M002804 4.3e-07 57.0 66 37.9
ATR0030G054 Amborella trichopoda HOM05M002520 ORTHO05M002804 7.4e-07 56.2 67 37.3
GWHGAORA021546 Cenchrus purpureus HOM05M001715 ORTHO05M001691 7.4e-07 56.2 68 45.6
DDU389G0026 Dioscorea dumetorum HOM05M002520 ORTHO05M002804 7.4e-07 56.2 55 45.5
Horvu_MOREX_4H01G396400 Hordeum vulgare HOM05M002520 ORTHO05M002804 7.4e-07 56.2 50 42.0
Misin12G258200 Miscanthus sinensis HOM05M001715 ORTHO05M001691 7.4e-07 56.2 71 40.8
Sevir.7G238200 Setaria viridis HOM05M001715 ORTHO05M001691 7.4e-07 56.2 68 45.6
TraesCS4B03G0685000 Triticum aestivum HOM05M002520 ORTHO05M002804 7.4e-07 56.2 50 42.0
TRIDC4BG044370 Triticum dicoccoides HOM05M002520 ORTHO05M002804 7.4e-07 56.2 50 42.0
TRITD4Bv1G152610 Triticum turgidum HOM05M002520 ORTHO05M002804 7.4e-07 56.2 50 42.0
Zosma03g19500 Zostera marina HOM05M001715 ORTHO05M001691 7.4e-07 56.2 54 48.1
Zjn_sc00003.1.g08660.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M002520 ORTHO05M002804 7.4e-07 56.2 76 32.9
CALSI_Maker00000068 Calamus simplicifolius HOM05M002520 ORTHO05M002804 9.6e-07 55.8 68 41.2
GWHGAORA054993 Cenchrus purpureus HOM05M002520 ORTHO05M002804 9.6e-07 55.8 50 42.0
Misin01G443700 Miscanthus sinensis HOM05M002520 ORTHO05M002804 9.6e-07 55.8 50 42.0
Misin02G424200 Miscanthus sinensis HOM05M002520 ORTHO05M002804 9.6e-07 55.8 50 42.0
OsKitaake03g081400 Oryza sativa Kitaake HOM05M002520 ORTHO05M002804 9.6e-07 55.8 56 39.3
Sspon.01G0035760-1B Saccharum spontaneum HOM05M002520 ORTHO05M002804 9.6e-07 55.8 50 42.0
Sspon.01G0035760-2P Saccharum spontaneum HOM05M002520 ORTHO05M002804 9.6e-07 55.8 50 42.0
GWHGASIY038048 Secale cereale HOM05M002520 ORTHO05M002804 9.6e-07 55.8 48 43.8
SEGI_16988 Sequoiadendron giganteum HOM05M001715 ORTHO05M001691 9.6e-07 55.8 47 57.4
Sobic.001G463400 Sorghum bicolor HOM05M002520 ORTHO05M002804 9.6e-07 55.8 50 42.0
Spipo28G0020000 Spirodela polyrhiza HOM05M001715 ORTHO05M001691 9.6e-07 55.8 55 45.5
Zm00001eb400610 Zea mays B73 HOM05M002520 ORTHO05M002804 9.6e-07 55.8 50 42.0
Zm00001eb400620 Zea mays B73 HOM05M002520 ORTHO05M002804 9.6e-07 55.8 50 42.0
Zm00007a00001973 Zea mays B104 HOM05M002520 ORTHO05M002804 9.6e-07 55.8 50 42.0
Aco020504 Ananas comosus HOM05M001715 ORTHO05M001691 1.3e-06 55.5 58 44.8
CDE05G0297 Ceratophyllum demersum HOM05M001715 ORTHO05M001691 1.3e-06 55.5 59 40.7
Dexi7B01G0018650 Digitaria exilis HOM05M001715 ORTHO05M001691 1.3e-06 55.5 68 44.1
EJB05_39401 Eragrostis curvula HOM05M001715 ORTHO05M001691 1.3e-06 55.5 68 44.1
EJB05_41816 Eragrostis curvula HOM05M007675 ORTHO05M009793 1.3e-06 55.5 72 41.7
Sspon.05G0023380-1B Saccharum spontaneum HOM05M001715 ORTHO05M001691 1.6e-06 55.1 68 42.6
Sspon.05G0023380-2C Saccharum spontaneum HOM05M001715 ORTHO05M001691 1.6e-06 55.1 68 42.6
GWHGASIY031446 Secale cereale HOM05M001715 ORTHO05M001691 1.6e-06 55.1 70 41.4
Seita.9G498200 Setaria italica HOM05M002520 ORTHO05M002804 1.6e-06 55.1 60 35.0
Sevir.9G502600 Setaria viridis HOM05M002520 ORTHO05M002804 1.6e-06 55.1 60 35.0
Zm00001eb007320 Zea mays B73 HOM05M002520 ORTHO05M002804 1.6e-06 55.1 50 42.0
Zm00001eb071700 Zea mays B73 HOM05M001715 ORTHO05M001691 1.6e-06 55.1 73 39.7
Zm00007a00025323 Zea mays B104 HOM05M001715 ORTHO05M001691 1.6e-06 55.1 73 39.7
Zm00007a00044159 Zea mays B104 HOM05M002520 ORTHO05M002804 1.6e-06 55.1 50 42.0
Bradi1g70780 Brachypodium distachyon HOM05M002520 ORTHO05M002804 2.1e-06 54.7 50 40.0
V3.Lp_chr4_0G24242 Lolium perenne HOM05M002520 ORTHO05M002804 2.1e-06 54.7 66 34.8
Misin12G226500 Miscanthus sinensis HOM05M001715 ORTHO05M001691 2.1e-06 54.7 68 42.6
GWHGASIY002595 Secale cereale HOM05M001715 ORTHO05M001691 2.1e-06 54.7 62 46.8
Sobic.006G205200 Sorghum bicolor HOM05M001715 ORTHO05M001691 2.1e-06 54.7 68 42.6
TraesCS2A03G1167700 Triticum aestivum HOM05M001715 ORTHO05M001691 2.1e-06 54.7 62 46.8
TraesCS2B03G1325400 Triticum aestivum HOM05M001715 ORTHO05M001691 2.1e-06 54.7 62 46.8
TraesCS2D03G1117900 Triticum aestivum HOM05M001715 ORTHO05M001691 2.1e-06 54.7 62 46.8
TRIDC2AG070510 Triticum dicoccoides HOM05M001715 ORTHO05M001691 2.1e-06 54.7 62 46.8
TRIDC2BG076230 Triticum dicoccoides HOM05M001715 ORTHO05M001691 2.1e-06 54.7 62 46.8
TRITD2Av1G271280 Triticum turgidum HOM05M001715 ORTHO05M001691 2.1e-06 54.7 62 46.8
TRITD2Bv1G234620 Triticum turgidum HOM05M001715 ORTHO05M001691 2.1e-06 54.7 62 46.8
Dexi9A01G0043610 Digitaria exilis HOM05M002520 ORTHO05M002804 2.8e-06 54.3 50 40.0
Dexi9B01G0042880 Digitaria exilis HOM05M002520 ORTHO05M002804 2.8e-06 54.3 50 40.0
EJB05_07614 Eragrostis curvula HOM05M002520 ORTHO05M002804 2.8e-06 54.3 50 40.0
Pahal.9G561000 Panicum hallii HOM05M002520 ORTHO05M002804 2.8e-06 54.3 66 34.8
GWHGAORA029233 Cenchrus purpureus HOM05M001715 ORTHO05M001691 3.7e-06 53.9 69 43.5
Horvu_MOREX_6H01G203200 Hordeum vulgare HOM05M001715 ORTHO05M001691 3.7e-06 53.9 69 44.9
OB03G17980 Oryza brachyantha HOM05M002520 ORTHO05M002804 3.7e-06 53.9 50 40.0
Pahal.7G280300 Panicum hallii HOM05M001715 ORTHO05M001691 3.7e-06 53.9 68 44.1
PH02Gene11891 Phyllostachys edulis HOM05M002520 ORTHO05M002804 3.7e-06 53.9 50 40.0
Seita.4G190600 Setaria italica HOM05M001715 ORTHO05M001691 3.7e-06 53.9 69 43.5
Sevir.4G200300 Setaria viridis HOM05M001715 ORTHO05M001691 3.7e-06 53.9 69 43.5
Ma05_g01590 Musa acuminata HOM05M002520 ORTHO05M002804 4.8e-06 53.5 71 39.4
Ot_Chr6_g01610 Oropetium thomaeum HOM05M001715 ORTHO05M001691 4.8e-06 53.5 57 45.6
Zm00001eb430390 Zea mays B73 HOM05M001715 ORTHO05M001691 4.8e-06 53.5 68 41.2
GWHGAORA020983 Cenchrus purpureus HOM05M001715 ORTHO05M001691 6.2e-06 53.1 67 37.3
Ma10_g23430 Musa acuminata HOM05M001715 ORTHO05M001691 6.2e-06 53.1 73 39.7
Ot_Chr1_g18361 Oropetium thomaeum HOM05M001715 ORTHO05M001691 6.2e-06 53.1 75 42.7
PH02Gene31376 Phyllostachys edulis HOM05M001715 ORTHO05M001691 6.2e-06 53.1 68 44.1
p5.00_sc00005_p0223 Elaeis guineensis HOM05M001715 ORTHO05M001691 8.1e-06 52.8 71 38.0
p5.00_sc00020_p0087 Elaeis guineensis HOM05M001715 ORTHO05M001691 8.1e-06 52.8 71 36.6
Ma03_g13380 Musa acuminata HOM05M001715 ORTHO05M001691 8.1e-06 52.8 60 40.0
OsKitaake04g292800 Oryza sativa Kitaake HOM05M001715 ORTHO05M001691 8.1e-06 52.8 69 36.2
Os04g0658200 Oryza sativa ssp. japonica HOM05M001715 ORTHO05M001691 8.1e-06 52.8 69 36.2
PH02Gene10177 Phyllostachys edulis HOM05M001715 ORTHO05M001691 8.1e-06 52.8 73 41.1


User provided reference genes

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