Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g076280.4 Solanum lycopersicum HOM05M000041 ORTHO05M000012 4.0e-97 357.5 198 100.0
Potri.002G105600 Populus trichocarpa HOM05M000041 ORTHO05M000012 3.2e-38 161.8 164 57.3
Potri.005G155300 Populus trichocarpa HOM05M000041 ORTHO05M000012 1.4e-33 146.4 164 54.9
Potri.007G010800 Populus trichocarpa HOM05M000041 ORTHO05M000012 2.9e-31 138.7 186 48.9
p5.00_sc00031_p0089 Elaeis guineensis HOM05M000041 ORTHO05M000012 8.5e-31 137.1 168 49.4
Dexi1B01G0027020 Digitaria exilis HOM05M000041 ORTHO05M000012 6.1e-29 131.0 161 49.1
V3.Lp_chr6_0G16636 Lolium perenne HOM05M000041 ORTHO05M000012 6.1e-29 131.0 164 47.0
OsR498G0204817100.01 Oryza sativa ssp. indica HOM05M000041 ORTHO05M000012 6.1e-29 131.0 165 47.3
CALSI_Maker00022122 Calamus simplicifolius HOM05M000041 ORTHO05M000012 8.0e-29 130.6 187 47.1
Ot_Chr1_g04290 Oropetium thomaeum HOM05M000041 ORTHO05M000012 8.0e-29 130.6 164 47.6
Aco004028 Ananas comosus HOM05M000041 ORTHO05M000012 1.0e-28 130.2 182 46.7
GWHGAZTO072527 Oryza alta HOM05M000041 ORTHO05M000012 1.0e-28 130.2 165 46.7
Seita.1G328500 Setaria italica HOM05M000041 ORTHO05M000012 1.0e-28 130.2 164 47.0
Sevir.1G335300 Setaria viridis HOM05M000041 ORTHO05M000012 1.0e-28 130.2 164 47.0
OsKitaake02g341900 Oryza sativa Kitaake HOM05M000041 ORTHO05M000012 1.4e-28 129.8 164 47.6
Os02g0761000 Oryza sativa ssp. japonica HOM05M000041 ORTHO05M000012 1.4e-28 129.8 164 47.6
OsKitaake06g080600 Oryza sativa Kitaake HOM05M000041 ORTHO05M000012 1.8e-28 129.4 164 50.6
OsR498G0611859800.01 Oryza sativa ssp. indica HOM05M000041 ORTHO05M000012 1.8e-28 129.4 164 50.6
Os06g0217300 Oryza sativa ssp. japonica HOM05M000041 ORTHO05M000012 1.8e-28 129.4 164 50.6
Glyma.01G023500 Glycine max HOM05M000041 ORTHO05M000012 3.0e-28 128.6 162 50.0
AET6Gv20774100 Aegilops tauschii HOM05M000041 ORTHO05M000012 4.0e-28 128.3 164 47.0
Bradi3g58220 Brachypodium distachyon HOM05M000041 ORTHO05M000012 4.0e-28 128.3 163 46.6
Sspon.04G0002820-1A Saccharum spontaneum HOM05M000041 ORTHO05M000012 4.0e-28 128.3 169 45.0
TraesCS6A03G0818700 Triticum aestivum HOM05M000041 ORTHO05M000012 4.0e-28 128.3 164 47.0
TraesCS6B03G0969600 Triticum aestivum HOM05M000041 ORTHO05M000012 4.0e-28 128.3 164 47.0
TRIDC6BG054970 Triticum dicoccoides HOM05M000041 ORTHO05M000012 4.0e-28 128.3 164 47.0
Aco002729 Ananas comosus HOM05M000041 ORTHO05M000012 5.2e-28 127.9 165 44.8
Horvu_MOREX_6H01G481200 Hordeum vulgare HOM05M000041 ORTHO05M000012 5.2e-28 127.9 163 46.0
Sspon.04G0002820-3C Saccharum spontaneum HOM05M000041 ORTHO05M000012 5.2e-28 127.9 164 45.7
TRITD6Bv1G183600 Triticum turgidum HOM05M000041 ORTHO05M000012 5.2e-28 127.9 164 47.0
Zm00001eb255670 Zea mays B73 HOM05M000041 ORTHO05M000012 5.2e-28 127.9 160 47.5
Aco027879 Ananas comosus HOM05M000041 ORTHO05M000012 6.8e-28 127.5 182 46.2
Zm00007a00032928 Zea mays B104 HOM05M000041 ORTHO05M000012 6.8e-28 127.5 164 45.7
GWHGASIY033192 Secale cereale HOM05M000041 ORTHO05M000012 8.8e-28 127.1 164 46.3
Misin07G502000 Miscanthus sinensis HOM05M000041 ORTHO05M000012 1.2e-27 126.7 164 45.1
GWHGAORA060826 Cenchrus purpureus HOM05M000041 ORTHO05M000012 1.5e-27 126.3 160 45.6
GWHGAZTO086380 Oryza alta HOM05M000041 ORTHO05M000012 1.5e-27 126.3 165 49.7
EJB05_20131 Eragrostis curvula HOM05M000041 ORTHO05M000012 2.0e-27 125.9 161 47.2
AT4G24540 Arabidopsis thaliana HOM05M000041 ORTHO05M000012 2.6e-27 125.6 181 44.8
TraesCS6D03G0692300 Triticum aestivum HOM05M000041 ORTHO05M000012 2.6e-27 125.6 164 46.3
TRITD6Av1G192540 Triticum turgidum HOM05M000041 ORTHO05M000012 2.6e-27 125.6 164 46.3
MisinT225300 Miscanthus sinensis HOM05M000041 ORTHO05M000012 3.4e-27 125.2 164 45.1
GWHGAZTO020920 Oryza alta HOM05M000041 ORTHO05M000012 4.4e-27 124.8 160 47.5
MBI06_g07363_MAGBIO Magnolia biondii HOM05M000041 ORTHO05M000012 5.7e-27 124.4 164 48.2
Ma09_g14590 Musa acuminata HOM05M000041 ORTHO05M000012 7.5e-27 124.0 177 47.5
OB02G40350 Oryza brachyantha HOM05M000041 ORTHO05M000012 7.5e-27 124.0 161 46.0
OB06G16920 Oryza brachyantha HOM05M000041 ORTHO05M000012 7.5e-27 124.0 165 48.5
PH02Gene08550 Phyllostachys edulis HOM05M000041 ORTHO05M000012 9.8e-27 123.6 165 47.9
PH02Gene49644 Phyllostachys edulis HOM05M000041 ORTHO05M000012 9.8e-27 123.6 165 47.3
Asa0G05496 Allium sativum HOM05M000041 ORTHO05M000012 1.7e-26 122.9 159 47.2
Ma03_g06740 Musa acuminata HOM05M000041 ORTHO05M000012 1.7e-26 122.9 177 46.3
PH02Gene02550 Phyllostachys edulis HOM05M000041 ORTHO05M000012 2.2e-26 122.5 164 44.5
GWHGAORA025377 Cenchrus purpureus HOM05M000041 ORTHO05M000012 2.8e-26 122.1 160 45.0
Ma10_g19310 Musa acuminata HOM05M000041 ORTHO05M000012 2.8e-26 122.1 185 42.7
Zosma03g19850 Zostera marina HOM05M000041 ORTHO05M000012 8.3e-26 120.6 161 46.6
Glyma.02G041500 Glycine max HOM05M000041 ORTHO05M000012 1.1e-25 120.2 159 48.4
HPP92_004084 Vanilla planifolia HOM05M000041 ORTHO05M000012 2.4e-25 119.0 175 42.3
Glyma.06G095700 Glycine max HOM05M000041 ORTHO05M000012 3.1e-25 118.6 181 42.5
Ot_Chr2_g17129 Oropetium thomaeum HOM05M000041 ORTHO05M000012 3.1e-25 118.6 161 47.8
DDU833G0011 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 4.1e-25 118.2 161 48.4
DDU835G0032 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 4.1e-25 118.2 161 48.4
Dexi1A01G0028400 Digitaria exilis HOM05M000041 ORTHO05M000012 7.0e-25 117.5 165 45.5
Zm00001eb193790 Zea mays B73 HOM05M000041 ORTHO05M000012 7.0e-25 117.5 163 42.9
DDU539G0068 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 1.2e-24 116.7 159 48.4
DDU541G0007 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 1.2e-24 116.7 159 48.4
Solyc11g010570.2 Solanum lycopersicum HOM05M000041 ORTHO05M000012 1.2e-24 116.7 114 58.8
Sobic.001G478400 Sorghum bicolor HOM05M000041 ORTHO05M000012 1.2e-24 116.7 186 39.2
ATR0104G005 Amborella trichopoda HOM05M000041 ORTHO05M000012 1.6e-24 116.3 158 48.1
AT2G22540 Arabidopsis thaliana HOM05M000041 ORTHO05M000012 1.6e-24 116.3 175 45.7
Pahal.1G406700 Panicum hallii HOM05M000041 ORTHO05M000012 1.6e-24 116.3 164 43.9
Pahal.4G254500 Panicum hallii HOM05M000041 ORTHO05M000012 1.6e-24 116.3 162 46.3
HPP92_004106 Vanilla planifolia HOM05M000041 ORTHO05M000012 1.6e-24 116.3 175 41.1
CDE10G1031 Ceratophyllum demersum HOM05M000041 ORTHO05M000012 4.5e-24 114.8 171 45.6
PH02Gene05469 Phyllostachys edulis HOM05M000041 ORTHO05M000012 4.5e-24 114.8 168 44.0
Horvu_MOREX_7H01G200700 Hordeum vulgare HOM05M000041 ORTHO05M000012 5.9e-24 114.4 161 44.1
Seita.4G077200 Setaria italica HOM05M000041 ORTHO05M000012 7.7e-24 114.0 165 44.8
Sevir.4G075400 Setaria viridis HOM05M000041 ORTHO05M000012 1.0e-23 113.6 165 44.8
Misin18G094400 Miscanthus sinensis HOM05M000041 ORTHO05M000012 2.3e-23 112.5 165 43.0
GWHGAORA053098 Cenchrus purpureus HOM05M000041 ORTHO05M000012 3.8e-23 111.7 162 43.8
Zm00001eb006480 Zea mays B73 HOM05M000041 ORTHO05M000012 6.6e-23 110.9 184 39.7
Bradi1g72150 Brachypodium distachyon HOM05M000041 ORTHO05M000012 8.6e-23 110.5 167 42.5
PH02Gene10764 Phyllostachys edulis HOM05M000041 ORTHO05M000012 8.6e-23 110.5 164 42.1
Bradi1g45812 Brachypodium distachyon HOM05M000041 ORTHO05M000012 1.1e-22 110.2 164 44.5
CDE10G1272 Ceratophyllum demersum HOM05M000041 ORTHO05M000012 1.1e-22 110.2 160 46.2
GWHGAORA016804 Cenchrus purpureus HOM05M000041 ORTHO05M000012 1.5e-22 109.8 161 43.5
OsR498G0305350600.01 Oryza sativa ssp. indica HOM05M000041 ORTHO05M000012 1.5e-22 109.8 171 40.9
GWHGAZTO037523 Oryza alta HOM05M000041 ORTHO05M000012 1.9e-22 109.4 115 54.8
CALSI_Maker00036397 Calamus simplicifolius HOM05M000041 ORTHO05M000012 4.2e-22 108.2 165 43.6
Seita.9G513900 Setaria italica HOM05M000041 ORTHO05M000012 4.2e-22 108.2 181 40.3
Sevir.9G518400 Setaria viridis HOM05M000041 ORTHO05M000012 4.2e-22 108.2 181 40.3
GWHGASIY021031 Secale cereale HOM05M000041 ORTHO05M000012 5.5e-22 107.8 164 42.7
Sobic.004G306500 Sorghum bicolor HOM05M000041 ORTHO05M000012 7.2e-22 107.5 113 48.7
TRITD7Av1G055870 Triticum turgidum HOM05M000041 ORTHO05M000012 7.2e-22 107.5 164 42.7
TraesCS7A03G0411400 Triticum aestivum HOM05M000041 ORTHO05M000012 9.5e-22 107.1 164 42.7
TraesCS7B03G0215800 Triticum aestivum HOM05M000041 ORTHO05M000012 9.5e-22 107.1 166 42.2
AET7Gv20455800 Aegilops tauschii HOM05M000041 ORTHO05M000012 1.6e-21 106.3 164 42.7
V3.Lp_chr4_0G24928 Lolium perenne HOM05M000041 ORTHO05M000012 1.6e-21 106.3 169 43.8
TraesCS7D03G0398300 Triticum aestivum HOM05M000041 ORTHO05M000012 1.6e-21 106.3 164 42.7
GWHGAZTO000845 Oryza alta HOM05M000041 ORTHO05M000012 2.1e-21 105.9 172 40.7
Sobic.010G085400 Sorghum bicolor HOM05M000041 ORTHO05M000012 2.1e-21 105.9 165 42.4
GWHGAORA054826 Cenchrus purpureus HOM05M000041 ORTHO05M000012 2.8e-21 105.5 164 40.9
evm.TU.AsparagusV1_03.390.V1.1 Asparagus officinalis HOM05M000041 ORTHO05M000012 3.6e-21 105.1 160 41.9
Glyma.08G068200 Glycine max HOM05M000041 ORTHO05M000012 3.6e-21 105.1 164 41.5
Horvu_MOREX_4H01G454700 Hordeum vulgare HOM05M000041 ORTHO05M000012 3.6e-21 105.1 169 45.0
OsKitaake03g067300 Oryza sativa Kitaake HOM05M000041 ORTHO05M000012 3.6e-21 105.1 172 42.4
Os03g0186600 Oryza sativa ssp. japonica HOM05M000041 ORTHO05M000012 3.6e-21 105.1 172 42.4
Potri.017G044500 Populus trichocarpa HOM05M000041 ORTHO05M000012 4.7e-21 104.8 170 37.6
TraesCS4D03G0709900 Triticum aestivum HOM05M000041 ORTHO05M000012 4.7e-21 104.8 169 43.8
TRIDC4AG000390 Triticum dicoccoides HOM05M000041 ORTHO05M000012 4.7e-21 104.8 169 43.8
Ot_Chr4_g00314 Oropetium thomaeum HOM05M000041 ORTHO05M000012 6.1e-21 104.4 169 37.9
Potri.007G115200 Populus trichocarpa HOM05M000041 ORTHO05M000012 8.0e-21 104.0 161 41.6
TraesCS4B03G0792700 Triticum aestivum HOM05M000041 ORTHO05M000012 8.0e-21 104.0 169 43.8
TRIDC4BG051550 Triticum dicoccoides HOM05M000041 ORTHO05M000012 8.0e-21 104.0 169 43.8
TRIDC7AG021780 Triticum dicoccoides HOM05M000041 ORTHO05M000012 8.0e-21 104.0 164 42.1
TraesCS4A03G0004000 Triticum aestivum HOM05M000041 ORTHO05M000012 1.0e-20 103.6 161 44.7
TRIDC7BG012000 Triticum dicoccoides HOM05M000041 ORTHO05M000012 1.8e-20 102.8 162 42.0
V3.Lp_chr7_0.1G2030 Lolium perenne HOM05M000041 ORTHO05M000012 2.3e-20 102.4 161 42.9
GWHGASIY037525 Secale cereale HOM05M000041 ORTHO05M000012 2.3e-20 102.4 168 42.3
TRITD4Av1G000900 Triticum turgidum HOM05M000041 ORTHO05M000012 2.3e-20 102.4 177 41.8
Glyma.07G181600 Glycine max HOM05M000041 ORTHO05M000012 3.0e-20 102.1 164 40.9
Potri.017G044200 Populus trichocarpa HOM05M000041 ORTHO05M000012 5.2e-20 101.3 156 38.5
Zjn_sc00007.1.g03950.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000041 ORTHO05M000012 5.2e-20 101.3 143 43.4
Spipo4G0015100 Spirodela polyrhiza HOM05M000041 ORTHO05M000012 6.8e-20 100.9 161 42.9
TRITD4Bv1G174840 Triticum turgidum HOM05M000041 ORTHO05M000012 8.9e-20 100.5 177 41.8
Pahal.9G577500 Panicum hallii HOM05M000041 ORTHO05M000012 1.5e-19 99.8 171 37.4
DDU272G0284 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 4.4e-19 98.2 162 41.4
Potri.007G115100 Populus trichocarpa HOM05M000041 ORTHO05M000012 4.4e-19 98.2 174 36.2
Zm00007a00007595 Zea mays B104 HOM05M000041 ORTHO05M000012 7.5e-19 97.4 98 51.0
Zjn_sc00049.1.g03950.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000041 ORTHO05M000012 1.7e-18 96.3 188 38.3
Sspon.04G0002820-2B Saccharum spontaneum HOM05M000041 ORTHO05M000012 2.2e-18 95.9 98 50.0
Dexi9A01G0044890 Digitaria exilis HOM05M000041 ORTHO05M000012 2.8e-18 95.5 170 40.0
EJB05_45678 Eragrostis curvula HOM05M000041 ORTHO05M000012 4.9e-18 94.7 164 41.5
Potri.007G115000 Populus trichocarpa HOM05M000041 ORTHO05M000012 6.3e-18 94.4 137 38.7
Zm00001eb372960 Zea mays B73 HOM05M000041 ORTHO05M000012 1.4e-17 93.2 121 45.5
Misin01G458500 Miscanthus sinensis HOM05M000041 ORTHO05M000012 2.4e-17 92.4 129 45.0
Misin01G450300 Miscanthus sinensis HOM05M000041 ORTHO05M000012 7.0e-17 90.9 129 45.7
Dexi9B01G0044220 Digitaria exilis HOM05M000041 ORTHO05M000012 1.2e-16 90.1 186 36.6
Sspon.08G0011530-2B Saccharum spontaneum HOM05M000041 ORTHO05M000012 2.0e-16 89.4 157 40.1
EJB05_07767 Eragrostis curvula HOM05M000041 ORTHO05M000012 2.7e-16 89.0 198 33.8
TRIDC6AG047180 Triticum dicoccoides HOM05M000041 ORTHO05M000012 3.5e-16 88.6 112 48.2
PH02Gene10416 Phyllostachys edulis HOM05M000041 ORTHO05M000012 7.8e-16 87.4 123 42.3
GWHGAZTO022488 Oryza alta HOM05M000041 ORTHO05M000012 1.7e-15 86.3 118 43.2
Zm00007a00011396 Zea mays B104 HOM05M000041 ORTHO05M000012 8.6e-15 84.0 169 37.3
Misin19G093100 Miscanthus sinensis HOM05M000041 ORTHO05M000012 1.1e-14 83.6 99 48.5
Sspon.01G0051130-2D Saccharum spontaneum HOM05M000041 ORTHO05M000012 4.3e-14 81.6 172 38.4
Sspon.01G0051130-1C Saccharum spontaneum HOM05M000041 ORTHO05M000012 5.6e-14 81.3 168 38.7
p5.00_sc00068_p0106 Elaeis guineensis HOM05M000041 ORTHO05M000012 3.6e-13 78.6 116 45.7
Zm00007a00040877 Zea mays B104 HOM05M000041 ORTHO05M000012 3.6e-13 78.6 96 46.9
GWHGAORA016797 Cenchrus purpureus HOM05M000041 ORTHO05M000012 1.0e-12 77.0 141 37.6
Bradi1g45806 Brachypodium distachyon HOM05M000041 ORTHO05M000012 1.4e-12 76.6 111 45.9
Spipo20G0020600 Spirodela polyrhiza HOM05M000041 ORTHO05M000012 3.1e-12 75.5 95 44.2
HPP92_005961 Vanilla planifolia HOM05M000041 ORTHO05M000012 4.0e-12 75.1 136 38.2
Glyma.13G256900 Glycine max HOM05M000041 ORTHO05M000012 2.0e-11 72.8 168 34.5
Solyc01g105800.4 Solanum lycopersicum HOM05M000041 ORTHO05M250219 2.0e-11 72.8 158 36.7
Glyma.15G057900 Glycine max HOM05M000041 ORTHO05M000012 9.8e-11 70.5 147 35.4
Dexi4A01G0008220 Digitaria exilis HOM05M000041 ORTHO05M000012 1.3e-10 70.1 96 45.8
Dexi4B01G0008570 Digitaria exilis HOM05M000041 ORTHO05M000012 1.7e-10 69.7 96 45.8
Glyma.15G058000 Glycine max HOM05M000041 ORTHO05M000012 3.7e-10 68.6 164 34.8
Spipo20G0020800 Spirodela polyrhiza HOM05M000041 ORTHO05M000012 6.4e-10 67.8 100 41.0
Glyma.13G257000 Glycine max HOM05M000041 ORTHO05M000012 8.3e-10 67.4 165 32.1
Misin17G054000 Miscanthus sinensis HOM05M000041 ORTHO05M000012 1.4e-09 66.6 72 50.0
Spipo20G0021000 Spirodela polyrhiza HOM05M000041 ORTHO05M000012 1.4e-09 66.6 74 48.6
SEGI_40177 Sequoiadendron giganteum HOM05M000041 ORTHO05M000012 2.4e-09 65.9 182 30.2
Zjn_sc00003.1.g10190.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000041 ORTHO05M000012 2.4e-09 65.9 157 33.8
Zjn_sc00022.1.g00370.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000041 ORTHO05M000012 7.0e-09 64.3 98 42.9
TRITD7Bv1G032180 Triticum turgidum HOM05M000041 ORTHO05M000012 3.5e-08 62.0 128 35.2
Spipo0G0120600 Spirodela polyrhiza HOM05M000041 ORTHO05M000012 3.9e-07 58.5 95 37.9
AT3G30260 Arabidopsis thaliana HOM05M000041 ORTHO05M000012 5.0e-07 58.2 113 33.6
AET4Gv20727600 Aegilops tauschii HOM05M000041 ORTHO05M000012 6.6e-07 57.8 89 42.7
Ma10_g18550 Musa acuminata HOM05M000041 ORTHO05M000012 1.5e-06 56.6 100 37.0
SEGI_21167 Sequoiadendron giganteum HOM05M000041 ORTHO05M000012 1.9e-06 56.2 80 36.2
Sspon.08G0011530-1A Saccharum spontaneum HOM05M000041 ORTHO05M000012 4.3e-06 55.1 96 38.5
Sspon.08G0011530-3C Saccharum spontaneum HOM05M000041 ORTHO05M000012 4.3e-06 55.1 96 38.5
Pahal.7G264500 Panicum hallii HOM05M000041 ORTHO05M000012 5.6e-06 54.7 77 41.6
GWHGAZTO071767 Oryza alta HOM05M000041 ORTHO05M000012 7.3e-06 54.3 68 42.6
OsKitaake02g288300 Oryza sativa Kitaake HOM05M000041 ORTHO05M000012 7.3e-06 54.3 68 42.6
OsR498G0204536100.01 Oryza sativa ssp. indica HOM05M000041 ORTHO05M000012 7.3e-06 54.3 68 42.6
Os02g0682200 Oryza sativa ssp. japonica HOM05M000041 ORTHO05M000012 7.3e-06 54.3 68 42.6
Potri.005G150501 Populus trichocarpa HOM05M000041 ORTHO05M000012 7.3e-06 54.3 103 33.0
Seita.7G210200 Setaria italica HOM05M000041 ORTHO05M000012 7.3e-06 54.3 77 41.6
Sevir.7G221900 Setaria viridis HOM05M000041 ORTHO05M000012 7.3e-06 54.3 77 41.6
PH02Gene16543 Phyllostachys edulis HOM05M000041 ORTHO05M000012 9.5e-06 53.9 177 28.8


User provided reference genes

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