Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g050400.1 Solanum lycopersicum HOM05M001839 ORTHO05M247506 4.5e-59 230.3 120 100.0
Solyc04g050380.3 Solanum lycopersicum HOM05M001839 ORTHO05M004926 4.1e-36 154.1 103 79.6
Solyc04g050390.3 Solanum lycopersicum HOM05M001839 ORTHO05M251538 1.6e-35 152.1 145 64.1
Solyc06g075180.1 Solanum lycopersicum HOM05M001839 ORTHO05M002374 2.5e-33 144.8 98 79.6
Solyc11g065670.1 Solanum lycopersicum HOM05M001839 ORTHO05M002374 2.7e-32 141.4 98 77.6
Solyc11g069440.1 Solanum lycopersicum HOM05M001839 ORTHO05M002374 2.7e-32 141.4 98 77.6
Aco007719 Ananas comosus HOM05M001839 ORTHO05M002374 2.3e-31 138.3 98 74.5
CALSI_Maker00025087 Calamus simplicifolius HOM05M001839 ORTHO05M002374 5.2e-31 137.1 98 73.5
Aco013953 Ananas comosus HOM05M001839 ORTHO05M002374 6.8e-31 136.7 95 73.7
Spipo16G0054700 Spirodela polyrhiza HOM05M001839 ORTHO05M002374 6.8e-31 136.7 98 71.4
Glyma.12G075500 Glycine max HOM05M001839 ORTHO05M002374 1.2e-30 136.0 98 72.4
ATR0326G010 Amborella trichopoda HOM05M001839 ORTHO05M002374 1.5e-30 135.6 98 73.5
CALSI_Maker00020844 Calamus simplicifolius HOM05M001839 ORTHO05M002374 1.5e-30 135.6 98 73.5
CALSI_Maker00026315 Calamus simplicifolius HOM05M001839 ORTHO05M002374 1.5e-30 135.6 95 74.7
Glyma.11G146300 Glycine max HOM05M001839 ORTHO05M002374 1.5e-30 135.6 98 72.4
Ma04_g09580 Musa acuminata HOM05M001839 ORTHO05M002374 1.5e-30 135.6 98 72.4
Ma10_g02880 Musa acuminata HOM05M001839 ORTHO05M002374 1.5e-30 135.6 98 72.4
Ma07_g21190 Musa acuminata HOM05M001839 ORTHO05M002374 2.0e-30 135.2 98 72.4
Glyma.13G140100 Glycine max HOM05M001839 ORTHO05M002374 2.6e-30 134.8 95 72.6
CDE02G1027 Ceratophyllum demersum HOM05M001839 ORTHO05M002374 3.4e-30 134.4 98 71.4
CDE06G0962 Ceratophyllum demersum HOM05M001839 ORTHO05M002374 3.4e-30 134.4 98 71.4
MBI07_g19299_MAGBIO Magnolia biondii HOM05M001839 ORTHO05M002374 3.4e-30 134.4 98 71.4
OB04G30780 Oryza brachyantha HOM05M001839 ORTHO05M002374 3.4e-30 134.4 95 74.7
ATR0048G015 Amborella trichopoda HOM05M001839 ORTHO05M002374 4.4e-30 134.0 98 72.4
MBI07_g19295_MAGBIO Magnolia biondii HOM05M001839 ORTHO05M002374 5.7e-30 133.7 98 71.4
Ma08_g24590 Musa acuminata HOM05M001839 ORTHO05M002374 7.5e-30 133.3 98 71.4
HPP92_020751 Vanilla planifolia HOM05M001839 ORTHO05M002374 7.5e-30 133.3 97 71.1
Glyma.10G053100 Glycine max HOM05M001839 ORTHO05M002374 9.8e-30 132.9 98 70.4
Ma06_g05290 Musa acuminata HOM05M001839 ORTHO05M002374 9.8e-30 132.9 98 70.4
evm.TU.AsparagusV1_01.831.V1.1 Asparagus officinalis HOM05M001839 ORTHO05M002374 1.3e-29 132.5 98 71.4
OB02G36200 Oryza brachyantha HOM05M001839 ORTHO05M002374 1.7e-29 132.1 95 73.7
Potri.018G145200 Populus trichocarpa HOM05M001839 ORTHO05M002374 2.2e-29 131.7 96 74.0
Potri.018G145504 Populus trichocarpa HOM05M001839 ORTHO05M002374 2.2e-29 131.7 96 74.0
Potri.018G145506 Populus trichocarpa HOM05M001839 ORTHO05M002374 2.2e-29 131.7 96 74.0
Potri.018G146600 Populus trichocarpa HOM05M001839 ORTHO05M002374 2.2e-29 131.7 96 74.0
OsKitaake02g298200 Oryza sativa Kitaake HOM05M001839 ORTHO05M002374 3.7e-29 131.0 95 72.6
OsR498G0204598300.01 Oryza sativa ssp. indica HOM05M001839 ORTHO05M002374 3.7e-29 131.0 95 72.6
Os02g0699600 Oryza sativa ssp. japonica HOM05M001839 ORTHO05M002374 3.7e-29 131.0 95 72.6
MBI10_g33434_MAGBIO Magnolia biondii HOM05M001839 ORTHO05M002374 4.8e-29 130.6 93 73.1
Misin07G455400 Miscanthus sinensis HOM05M001839 ORTHO05M002374 6.3e-29 130.2 95 72.6
Sspon.04G0005750-3C Saccharum spontaneum HOM05M001839 ORTHO05M002374 6.3e-29 130.2 97 70.1
AET2Gv20978700 Aegilops tauschii HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Bradi5g20330 Brachypodium distachyon HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Misin11G057400 Miscanthus sinensis HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Misin11G176900 Miscanthus sinensis HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Misin12G061700 Miscanthus sinensis HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Misin12G221400 Miscanthus sinensis HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Sspon.04G0005750-1A Saccharum spontaneum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Sspon.04G0005750-2B Saccharum spontaneum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Sspon.04G0005750-4D Saccharum spontaneum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Sspon.05G0026220-1B Saccharum spontaneum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Sspon.05G0026220-2C Saccharum spontaneum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Sobic.004G271400 Sorghum bicolor HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Sobic.006G057200 Sorghum bicolor HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
Spipo16G0015700 Spirodela polyrhiza HOM05M001839 ORTHO05M002374 8.3e-29 129.8 98 68.4
TraesCS2A03G1051300 Triticum aestivum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
TraesCS2B03G1176000 Triticum aestivum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
TraesCS2D03G0992100 Triticum aestivum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
TRIDC2AG063520 Triticum dicoccoides HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
TRIDC2BG067600 Triticum dicoccoides HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
TRITD2Av1G254880 Triticum turgidum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
TRITD2Bv1G216180 Triticum turgidum HOM05M001839 ORTHO05M002374 8.3e-29 129.8 95 71.6
HPP92_014715 Vanilla planifolia HOM05M001839 ORTHO05M002374 8.3e-29 129.8 98 69.4
V3.Lp_chr2_0G20426 Lolium perenne HOM05M001839 ORTHO05M002374 1.1e-28 129.4 95 71.6
V3.Lp_chr6_0G14022 Lolium perenne HOM05M001839 ORTHO05M002374 1.1e-28 129.4 95 71.6
Ot_Chr1_gn30538 Oropetium thomaeum HOM05M001839 ORTHO05M002374 1.1e-28 129.4 95 72.6
Ot_Chr6_g01573 Oropetium thomaeum HOM05M001839 ORTHO05M002374 1.1e-28 129.4 95 72.6
GWHGAZTO020271 Oryza alta HOM05M001839 ORTHO05M002374 1.1e-28 129.4 95 71.6
Pahal.7G276300 Panicum hallii HOM05M001839 ORTHO05M002374 1.1e-28 129.4 95 71.6
PH02Gene02270 Phyllostachys edulis HOM05M001839 ORTHO05M002374 1.1e-28 129.4 95 72.6
PH02Gene03780 Phyllostachys edulis HOM05M001839 ORTHO05M002374 1.1e-28 129.4 95 72.6
Sobic.006G201500 Sorghum bicolor HOM05M001839 ORTHO05M002374 1.1e-28 129.4 95 70.5
Dexi7B01G0005880 Digitaria exilis HOM05M001839 ORTHO05M002374 1.4e-28 129.0 95 71.6
Dexi7B01G0018250 Digitaria exilis HOM05M001839 ORTHO05M002374 1.4e-28 129.0 95 71.6
Pahal.1G359800 Panicum hallii HOM05M001839 ORTHO05M002374 1.4e-28 129.0 95 71.6
PH02Gene27226 Phyllostachys edulis HOM05M001839 ORTHO05M002374 1.4e-28 129.0 95 72.6
Spipo11G0065200 Spirodela polyrhiza HOM05M001839 ORTHO05M002374 1.4e-28 129.0 98 67.3
Pahal.7G130000 Panicum hallii HOM05M001839 ORTHO05M002374 1.8e-28 128.6 95 70.5
Zjn_sc00004.1.g08980.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M001839 ORTHO05M002374 1.8e-28 128.6 95 71.6
Zjn_sc00017.1.g05200.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M001839 ORTHO05M002374 1.8e-28 128.6 95 71.6
Zjn_sc00023.1.g01990.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M001839 ORTHO05M002374 1.8e-28 128.6 95 71.6
DDU500G0002 Dioscorea dumetorum HOM05M001839 ORTHO05M002374 2.4e-28 128.3 93 72.0
DDU757G0009 Dioscorea dumetorum HOM05M001839 ORTHO05M002374 2.4e-28 128.3 93 72.0
PH02Gene08765 Phyllostachys edulis HOM05M001839 ORTHO05M002374 2.4e-28 128.3 95 71.6
Pp3c9_15380 Physcomitrium patens HOM05M001839 ORTHO05M002374 2.4e-28 128.3 94 71.3
Potri.006G077200 Populus trichocarpa HOM05M001839 ORTHO05M002374 2.4e-28 128.3 96 71.9
Pp3c16_2860 Physcomitrium patens HOM05M001839 ORTHO05M002374 3.1e-28 127.9 94 71.3
Zm00001eb251610 Zea mays B73 HOM05M001839 ORTHO05M002374 3.1e-28 127.9 95 71.6
Horvu_MOREX_6H01G410200 Hordeum vulgare HOM05M001839 ORTHO05M002374 4.1e-28 127.5 95 71.6
GWHGAZTO071907 Oryza alta HOM05M001839 ORTHO05M002374 4.1e-28 127.5 95 71.6
Pp3c15_14410 Physcomitrium patens HOM05M001839 ORTHO05M002374 4.1e-28 127.5 94 71.3
TraesCS6A03G0717500 Triticum aestivum HOM05M001839 ORTHO05M002374 4.1e-28 127.5 95 71.6
TRITD6Av1G170450 Triticum turgidum HOM05M001839 ORTHO05M002374 4.1e-28 127.5 95 71.6
Asa7G04198 Allium sativum HOM05M001839 ORTHO05M002374 5.4e-28 127.1 98 67.3
Mapoly0007s0191 Marchantia polymorpha HOM05M001839 ORTHO05M002374 5.4e-28 127.1 98 68.4
OsKitaake04g247400 Oryza sativa Kitaake HOM05M001839 ORTHO05M002374 5.4e-28 127.1 95 70.5
OsR498G0409212700.01 Oryza sativa ssp. indica HOM05M001839 ORTHO05M002374 5.4e-28 127.1 95 70.5
Os04g0598200 Oryza sativa ssp. japonica HOM05M001839 ORTHO05M002374 5.4e-28 127.1 95 70.5
Pp3c6_19290 Physcomitrium patens HOM05M001839 ORTHO05M002374 5.4e-28 127.1 94 71.3
SEGI_14373 Sequoiadendron giganteum HOM05M001839 ORTHO05M002374 5.4e-28 127.1 98 68.4
Zm00001eb072000 Zea mays B73 HOM05M001839 ORTHO05M002374 5.4e-28 127.1 95 71.6
Asa8G05300 Allium sativum HOM05M001839 ORTHO05M002374 7.0e-28 126.7 98 67.3
Asa8G05301 Allium sativum HOM05M001839 ORTHO05M002374 7.0e-28 126.7 98 67.3
AT2G37190 Arabidopsis thaliana HOM05M001839 ORTHO05M002374 7.0e-28 126.7 98 66.3
AT5G60670 Arabidopsis thaliana HOM05M001839 ORTHO05M002374 7.0e-28 126.7 98 67.3
Horvu_MOREX_2H01G629900 Hordeum vulgare HOM05M001839 ORTHO05M002374 7.0e-28 126.7 95 70.5
Pp3c27_660 Physcomitrium patens HOM05M001839 ORTHO05M002374 7.0e-28 126.7 94 71.3
Pp3c27_820 Physcomitrium patens HOM05M001839 ORTHO05M002374 7.0e-28 126.7 94 71.3
Zm00001eb347390 Zea mays B73 HOM05M001839 ORTHO05M002374 7.0e-28 126.7 95 70.5
AT3G53430 Arabidopsis thaliana HOM05M001839 ORTHO05M002374 9.1e-28 126.3 98 66.3
Seita.1G284700 Setaria italica HOM05M001839 ORTHO05M002374 9.1e-28 126.3 95 70.5
Seita.7G078800 Setaria italica HOM05M001839 ORTHO05M002374 9.1e-28 126.3 95 70.5
Seita.7G222200 Setaria italica HOM05M001839 ORTHO05M002374 9.1e-28 126.3 95 70.5
Sevir.1G290200 Setaria viridis HOM05M001839 ORTHO05M002374 9.1e-28 126.3 95 70.5
Sevir.7G085800 Setaria viridis HOM05M001839 ORTHO05M002374 9.1e-28 126.3 95 70.5
Zm00001eb034250 Zea mays B73 HOM05M001839 ORTHO05M002374 9.1e-28 126.3 95 70.5
Zm00001eb430180 Zea mays B73 HOM05M001839 ORTHO05M002374 9.1e-28 126.3 95 68.4
Bradi3g52460 Brachypodium distachyon HOM05M001839 ORTHO05M002374 1.2e-27 125.9 95 70.5
GWHGAORA021584 Cenchrus purpureus HOM05M001839 ORTHO05M002374 1.2e-27 125.9 95 71.6
GWHGAORA024912 Cenchrus purpureus HOM05M001839 ORTHO05M002374 1.2e-27 125.9 95 71.6
GWHGAORA062922 Cenchrus purpureus HOM05M001839 ORTHO05M002374 1.2e-27 125.9 95 71.6
GWHGAORA062923 Cenchrus purpureus HOM05M001839 ORTHO05M002374 1.2e-27 125.9 95 71.6
DDU506G0203 Dioscorea dumetorum HOM05M001839 ORTHO05M002374 1.2e-27 125.9 97 68.0
GWHGASIY011085 Secale cereale HOM05M001839 ORTHO05M002374 1.2e-27 125.9 95 70.5
GWHGASIY011087 Secale cereale HOM05M001839 ORTHO05M002374 1.2e-27 125.9 95 70.5
Zm00001eb188040 Zea mays B73 HOM05M001839 ORTHO05M002374 1.2e-27 125.9 95 70.5
AET6Gv20683300 Aegilops tauschii HOM05M001839 ORTHO05M002374 1.6e-27 125.6 95 70.5
GWHGASIY032872 Secale cereale HOM05M001839 ORTHO05M002374 1.6e-27 125.6 95 70.5
TraesCS6D03G0601000 Triticum aestivum HOM05M001839 ORTHO05M002374 1.6e-27 125.6 95 70.5
TRIDC6BG048160 Triticum dicoccoides HOM05M001839 ORTHO05M002374 1.6e-27 125.6 95 70.5
Zosma03g25110 Zostera marina HOM05M001839 ORTHO05M002374 1.6e-27 125.6 95 67.4
Zosma06g19180 Zostera marina HOM05M001839 ORTHO05M002374 2.0e-27 125.2 95 68.4
GWHGAORA023216 Cenchrus purpureus HOM05M001839 ORTHO05M002374 2.7e-27 124.8 95 70.5
GWHGAORA061491 Cenchrus purpureus HOM05M001839 ORTHO05M002374 2.7e-27 124.8 95 70.5
Sspon.05G0026220-3D Saccharum spontaneum HOM05M001839 ORTHO05M002374 4.5e-27 124.0 90 72.2
Sspon.05G0031720-1C Saccharum spontaneum HOM05M001839 ORTHO05M002374 4.5e-27 124.0 90 72.2
Sspon.05G0031720-2D Saccharum spontaneum HOM05M001839 ORTHO05M002374 4.5e-27 124.0 90 72.2
Sevir.7G233900 Setaria viridis HOM05M001839 ORTHO05M002374 4.5e-27 124.0 95 69.5
Zm00001eb084920 Zea mays B73 HOM05M001839 ORTHO05M002374 4.5e-27 124.0 95 68.4
Zm00007a00040120 Zea mays B104 HOM05M001839 ORTHO05M002374 4.5e-27 124.0 95 68.4
AagrBONN_evm.TU.Sc2ySwM_228.5054 Anthoceros agrestis HOM05M001839 ORTHO05M002374 1.7e-26 122.1 95 69.5
Zm00007a00017379 Zea mays B104 HOM05M001839 ORTHO05M002374 1.7e-26 122.1 90 72.2
Sspon.04G0005750-2P Saccharum spontaneum HOM05M001839 ORTHO05M002374 2.9e-26 121.3 89 71.9
Zm00007a00013384 Zea mays B104 HOM05M001839 ORTHO05M002374 2.9e-26 121.3 90 72.2
Zm00007a00022231 Zea mays B104 HOM05M001839 ORTHO05M002374 3.8e-26 120.9 92 70.7
Zm00007a00043556 Zea mays B104 HOM05M001839 ORTHO05M004102 3.8e-26 120.9 90 71.1
Zm00007a00027400 Zea mays B104 HOM05M001839 ORTHO05M002374 5.0e-26 120.6 90 71.1
Zm00007a00013861 Zea mays B104 HOM05M001839 ORTHO05M004102 2.5e-25 118.2 117 59.0
CBR_g25861 Chara braunii HOM05M001839 ORTHO05M002374 1.2e-24 115.9 98 63.3
CALSI_Maker00014362 Calamus simplicifolius HOM05M001839 ORTHO05M002374 1.6e-24 115.5 87 67.8
CALSI_Maker00025603 Calamus simplicifolius HOM05M001839 ORTHO05M002374 1.6e-24 115.5 87 67.8
Pp3c1_7510 Physcomitrium patens HOM05M001839 ORTHO05M002374 4.7e-24 114.0 96 63.5
SMO358G0495 Selaginella moellendorffii HOM05M001839 ORTHO05M002374 4.7e-24 114.0 96 63.5
MCO01G447 Micromonas commoda HOM05M001839 ORTHO05M002374 1.0e-23 112.8 95 61.1
MBI07_g30180_MAGBIO Magnolia biondii HOM05M001839 ORTHO05M002374 1.2e-22 109.4 97 60.8
CALSI_Maker00036692 Calamus simplicifolius HOM05M001839 ORTHO05M082384 2.0e-22 108.6 87 65.5
Cre12.g528750 Chlamydomonas reinhardtii HOM05M001839 ORTHO05M002374 3.7e-21 104.4 95 55.8
PRCOL_00000661 Prasinoderma coloniale HOM05M001839 ORTHO05M002374 1.1e-20 102.8 98 56.1
Solyc04g050407.1 Solanum lycopersicum HOM05M001839 ORTHO05M252577 2.0e-19 98.6 129 51.2
CDE10G1078 Ceratophyllum demersum HOM05M001839 ORTHO05M002374 2.3e-18 95.1 70 72.9
SEGI_22401 Sequoiadendron giganteum HOM05M001839 ORTHO05M002374 5.0e-18 94.0 71 71.8
Zm00007a00040301 Zea mays B104 HOM05M001839 ORTHO05M002374 1.1e-17 92.8 93 59.1
Asa7G01251 Allium sativum HOM05M001839 ORTHO05M040874 1.5e-17 92.4 72 65.3
Solyc04g150135.1 Solanum lycopersicum HOM05M001839 ORTHO05M004926 3.3e-17 91.3 70 68.6
Asa7G00253 Allium sativum HOM05M001839 ORTHO05M039966 2.8e-16 88.2 75 61.3
Solyc04g050370.1 Solanum lycopersicum HOM05M001839 ORTHO05M247278 3.6e-16 87.8 85 60.0
Asa5G03269 Allium sativum HOM05M001839 ORTHO05M043370 8.0e-16 86.7 75 60.0
evm.TU.AsparagusV1_07.2056.V1.1 Asparagus officinalis HOM05M001839 ORTHO05M002374 4.4e-14 80.9 57 66.7
CALSI_Maker00025649 Calamus simplicifolius HOM05M000278 ORTHO05M080439 7.5e-14 80.1 60 71.7
Solyc04g050365.1 Solanum lycopersicum HOM05M001839 ORTHO05M249079 1.3e-13 79.3 81 60.5
Solyc04g050360.2 Solanum lycopersicum HOM05M001839 ORTHO05M027680 3.7e-13 77.8 51 74.5
GWHGAORA060354 Cenchrus purpureus HOM05M001839 ORTHO05M002374 4.9e-13 77.4 62 67.7
Aco025822 Ananas comosus HOM05M001839 ORTHO05M000497 2.4e-12 75.1 61 63.9
Solyc04g050330.3 Solanum lycopersicum HOM05M001839 ORTHO05M249837 4.6e-11 70.9 120 45.0
Solyc04g050340.3 Solanum lycopersicum HOM05M001839 ORTHO05M252037 2.3e-10 68.6 84 53.6
Solyc04g050403.1 Solanum lycopersicum HOM05M001839 ORTHO05M004926 8.6e-10 66.6 54 74.1
Solyc04g050430.1 Solanum lycopersicum HOM05M001839 ORTHO05M004926 1.5e-09 65.9 47 74.5
CALSI_Maker00001988 Calamus simplicifolius HOM05M001839 ORTHO05M081790 3.3e-09 64.7 71 53.5
TraesCS6B03G0851200 Triticum aestivum HOM05M001839 ORTHO05M002374 5.6e-09 63.9 95 45.3
TRITD6Bv1G156740 Triticum turgidum HOM05M001839 ORTHO05M002374 5.6e-09 63.9 95 45.3
Asa6G07206 Allium sativum HOM05M001839 ORTHO05M045255 2.0e-06 55.5 62 45.2


User provided reference genes

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