Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g039790.3 Solanum lycopersicum HOM05M000535 ORTHO05M000804 1.2e-75 285.8 157 100.0
Zm00007a00043673 Zea mays B104 HOM05M000535 ORTHO05M000804 2.2e-50 201.8 179 70.9
TRITD1Av1G099700 Triticum turgidum HOM05M000535 ORTHO05M000804 3.8e-50 201.1 186 67.7
TRITD7Av1G208750 Triticum turgidum HOM05M000535 ORTHO05M000804 1.9e-49 198.7 187 67.9
Solyc00g500146.1 Solanum lycopersicum HOM05M000535 ORTHO05M000804 9.4e-49 196.4 211 62.1
ATCG00890 Arabidopsis thaliana HOM05M000535 ORTHO05M000804 6.1e-48 193.7 210 61.4
ATCG01250 Arabidopsis thaliana HOM05M000535 ORTHO05M000804 6.1e-48 193.7 210 61.4
Potri.011G075051 Populus trichocarpa HOM05M000535 ORTHO05M000804 6.1e-48 193.7 185 67.6
TRIDC5AG060090 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.0e-47 193.0 211 60.7
Asa7G01607 Allium sativum HOM05M000535 ORTHO05M000804 5.2e-47 190.7 211 60.7
Aco024837 Ananas comosus HOM05M000535 ORTHO05M000804 5.2e-47 190.7 211 60.7
Aco025944 Ananas comosus HOM05M000535 ORTHO05M000804 5.2e-47 190.7 211 60.7
Aco027529 Ananas comosus HOM05M000535 ORTHO05M000804 5.2e-47 190.7 211 60.7
OsKitaake05g100800 Oryza sativa Kitaake HOM05M000535 ORTHO05M000804 5.2e-47 190.7 211 59.7
Asa0G04973 Allium sativum HOM05M000535 ORTHO05M000804 6.7e-47 190.3 211 59.7
TraesCS6A03G0461900 Triticum aestivum HOM05M000535 ORTHO05M000804 8.8e-47 189.9 211 59.7
TRIDC6AG026850 Triticum dicoccoides HOM05M000535 ORTHO05M000804 8.8e-47 189.9 211 59.7
TRITD6Av1G085080 Triticum turgidum HOM05M000535 ORTHO05M000804 8.8e-47 189.9 211 59.7
AET3Gv20245700 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.1e-46 189.5 211 60.2
AET5Gv20015900 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.1e-46 189.5 211 60.2
AET6Gv20471600 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.1e-46 189.5 211 60.2
Horvu_MOREX_2H01G421000 Hordeum vulgare HOM05M000535 ORTHO05M000804 1.1e-46 189.5 211 60.2
TraesCS3B03G0294700 Triticum aestivum HOM05M000535 ORTHO05M000804 1.1e-46 189.5 211 60.2
TRITD3Av1G179020 Triticum turgidum HOM05M000535 ORTHO05M000804 1.1e-46 189.5 211 60.2
Zm00007a00005727 Zea mays B104 HOM05M000535 ORTHO05M000804 1.1e-46 189.5 211 60.2
AET4Gv20401700 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.5e-46 189.1 211 59.7
AET7Gv20708600 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.5e-46 189.1 211 59.7
OsKitaake01g357200 Oryza sativa Kitaake HOM05M000535 ORTHO05M000804 1.5e-46 189.1 211 59.7
OsKitaake07g119400 Oryza sativa Kitaake HOM05M000535 ORTHO05M000804 1.5e-46 189.1 211 59.7
TraesCS4D03G0329300 Triticum aestivum HOM05M000535 ORTHO05M000804 1.5e-46 189.1 211 59.7
TraesCS7D03G0659200 Triticum aestivum HOM05M000535 ORTHO05M000804 1.5e-46 189.1 211 59.7
V3.Lp_chr3_0G28 Lolium perenne HOM05M000535 ORTHO05M000804 2.0e-46 188.7 211 59.7
V3.Lp_chr7_0.1G1190 Lolium perenne HOM05M000535 ORTHO05M000804 2.0e-46 188.7 211 59.7
V3.Lp_chr7_0.1G1230 Lolium perenne HOM05M000535 ORTHO05M000804 2.0e-46 188.7 211 59.7
V3.Lp_scaffold_5331G36 Lolium perenne HOM05M000535 ORTHO05M000804 2.0e-46 188.7 211 59.7
V3.Lp_scaffold_891G44 Lolium perenne HOM05M000535 ORTHO05M000804 2.0e-46 188.7 211 59.7
TraesCS1A03G0423800 Triticum aestivum HOM05M000535 ORTHO05M000804 2.0e-46 188.7 210 60.0
Ot_Un136_gn40096 Oropetium thomaeum HOM05M000535 ORTHO05M000804 2.6e-46 188.3 211 59.7
Ot_Un136_gn40109 Oropetium thomaeum HOM05M000535 ORTHO05M000804 2.6e-46 188.3 211 59.7
Ot_Un168_gn40553 Oropetium thomaeum HOM05M000535 ORTHO05M000804 2.6e-46 188.3 211 59.7
Ot_Un169_gn40622 Oropetium thomaeum HOM05M000535 ORTHO05M000804 2.6e-46 188.3 211 59.7
Ot_Un171_gn40671 Oropetium thomaeum HOM05M000535 ORTHO05M000804 2.6e-46 188.3 211 59.7
Ot_Un3_gn40904 Oropetium thomaeum HOM05M000535 ORTHO05M000804 2.6e-46 188.3 211 59.7
TraesCS5D03G1009500 Triticum aestivum HOM05M000535 ORTHO05M000804 2.6e-46 188.3 211 60.2
AET0Gv20104400 Aegilops tauschii HOM05M000535 ORTHO05M000804 3.3e-46 188.0 211 59.7
AET6Gv20428100 Aegilops tauschii HOM05M000535 ORTHO05M000804 4.4e-46 187.6 211 59.2
TRITD3Av1G071490 Triticum turgidum HOM05M000535 ORTHO05M000804 4.4e-46 187.6 211 59.7
TraesCS4B03G0651100 Triticum aestivum HOM05M000535 ORTHO05M000804 5.7e-46 187.2 211 59.2
TRIDC4BG041950 Triticum dicoccoides HOM05M000535 ORTHO05M000804 5.7e-46 187.2 211 59.2
TRITD4Bv1G144190 Triticum turgidum HOM05M000535 ORTHO05M000804 5.7e-46 187.2 211 59.2
TRIDC2BG031450 Triticum dicoccoides HOM05M000535 ORTHO05M000804 7.5e-46 186.8 211 59.7
TraesCS6A03G0269200 Triticum aestivum HOM05M000535 ORTHO05M000804 9.7e-46 186.4 211 59.7
TRIDC5AG078130 Triticum dicoccoides HOM05M000535 ORTHO05M000804 9.7e-46 186.4 211 59.2
TRITD3Av1G245860 Triticum turgidum HOM05M000535 ORTHO05M000804 9.7e-46 186.4 211 59.2
TRITD6Av1G035690 Triticum turgidum HOM05M000535 ORTHO05M000804 9.7e-46 186.4 211 59.7
TraesCS1D03G0460800 Triticum aestivum HOM05M000535 ORTHO05M000804 1.3e-45 186.0 211 58.8
TraesCS5D03G0019200 Triticum aestivum HOM05M000535 ORTHO05M000804 1.3e-45 186.0 211 59.7
TraesCS6D03G0353900 Triticum aestivum HOM05M000535 ORTHO05M000804 1.3e-45 186.0 211 58.8
TRIDC3BG005830 Triticum dicoccoides HOM05M000535 ORTHO05M000804 2.2e-45 185.3 211 59.2
Asa0G04489 Allium sativum HOM05M000535 ORTHO05M000804 8.2e-45 183.3 205 59.5
Asa2G05756 Allium sativum HOM05M000535 ORTHO05M000804 8.2e-45 183.3 205 59.5
Asa5G05761 Allium sativum HOM05M000535 ORTHO05M000804 8.2e-45 183.3 205 59.5
Asa8G02584 Allium sativum HOM05M000535 ORTHO05M000804 8.2e-45 183.3 205 59.5
Asa8G05534 Allium sativum HOM05M000535 ORTHO05M000804 8.2e-45 183.3 205 59.5
OsR498G0510354100.01 Oryza sativa ssp. indica HOM05M000535 ORTHO05M000804 8.2e-45 183.3 205 58.5
TraesCS1B03G1047100 Triticum aestivum HOM05M000535 ORTHO05M000804 1.1e-44 183.0 211 58.8
TRITD1Bv1G201080 Triticum turgidum HOM05M000535 ORTHO05M000804 1.1e-44 183.0 211 58.8
Horvu_MOREX_2H01G373900 Hordeum vulgare HOM05M000535 ORTHO05M000804 1.4e-44 182.6 211 58.3
AET1Gv20305700 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.8e-44 182.2 205 59.0
AET4Gv20044200 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.8e-44 182.2 205 59.0
Bradi1g05824 Brachypodium distachyon HOM05M000535 ORTHO05M000804 1.8e-44 182.2 205 59.0
Bradi3g27346 Brachypodium distachyon HOM05M000535 ORTHO05M000804 1.8e-44 182.2 205 59.0
Pahal.5G333100 Panicum hallii HOM05M000535 ORTHO05M000804 1.8e-44 182.2 205 59.0
TraesCSU03G0168600 Triticum aestivum HOM05M000535 ORTHO05M000804 1.8e-44 182.2 211 59.7
TraesCSU03G0276300 Triticum aestivum HOM05M000535 ORTHO05M000804 1.8e-44 182.2 211 59.7
TRIDC7AG053990 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.8e-44 182.2 205 59.0
OsKitaake10g127401 Oryza sativa Kitaake HOM05M000535 ORTHO05M000804 2.4e-44 181.8 205 58.5
Pahal.2G175500 Panicum hallii HOM05M000535 ORTHO05M000804 2.4e-44 181.8 205 59.0
TRITD3Bv1G038170 Triticum turgidum HOM05M000535 ORTHO05M000804 3.1e-44 181.4 211 58.8
TraesCS6B03G0597200 Triticum aestivum HOM05M000535 ORTHO05M000804 1.2e-43 179.5 208 57.7
Asa0G01497 Allium sativum HOM05M000535 ORTHO05M000804 1.6e-43 179.1 211 57.3
Solyc01g017260.1 Solanum lycopersicum HOM05M000535 ORTHO05M000804 4.5e-43 177.6 145 73.8
TraesCS4D03G0348100 Triticum aestivum HOM05M000535 ORTHO05M000804 1.0e-42 176.4 211 56.9
TRIDC4AG060150 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.3e-42 176.0 210 57.6
TRITD3Bv1G076070 Triticum turgidum HOM05M000535 ORTHO05M000804 5.0e-42 174.1 205 58.0
TraesCS7B03G0242700 Triticum aestivum HOM05M000535 ORTHO05M000804 5.5e-41 170.6 209 56.5
Pahal.5G243800 Panicum hallii HOM05M000535 ORTHO05M000804 2.3e-39 165.2 205 56.6
Zm00007a00006571 Zea mays B104 HOM05M000535 ORTHO05M000804 9.8e-38 159.8 184 58.7
Zm00007a00022341 Zea mays B104 HOM05M000535 ORTHO05M000804 9.8e-38 159.8 184 58.7
Zm00007a00029369 Zea mays B104 HOM05M000535 ORTHO05M000804 9.8e-38 159.8 184 58.7
Zm00007a00042559 Zea mays B104 HOM05M000535 ORTHO05M000804 9.8e-38 159.8 184 58.7
Solyc10g061887.1 Solanum lycopersicum HOM05M000535 ORTHO05M000804 1.7e-37 159.1 180 59.4
Asa4G00084 Allium sativum HOM05M000535 ORTHO05M000804 9.1e-36 153.3 192 54.7
OsR498G0408427800.01 Oryza sativa ssp. indica HOM05M000535 ORTHO05M000804 2.0e-35 152.1 185 56.8
Seita.J017200 Setaria italica HOM05M000535 ORTHO05M000804 2.0e-35 152.1 156 62.2
GWHGAORA029267 Cenchrus purpureus HOM05M000535 ORTHO05M000804 2.7e-32 141.7 151 63.6
TRIDC7AG008240 Triticum dicoccoides HOM05M000535 ORTHO05M000804 2.7e-32 141.7 172 56.4
TRIDC1BG011850 Triticum dicoccoides HOM05M000535 ORTHO05M000804 2.3e-31 138.7 174 54.6
Solyc11g021090.3 Solanum lycopersicum HOM05M000535 ORTHO05M000804 3.1e-28 128.3 144 61.8
V3.Lp_scaffold_4680G4 Lolium perenne HOM05M000535 ORTHO05M000804 5.4e-28 127.5 161 54.0
TRITD6Bv1G097820 Triticum turgidum HOM05M000535 ORTHO05M000804 5.4e-28 127.5 186 52.7
Horvu_MOREX_Un01G104400 Hordeum vulgare HOM05M000535 ORTHO05M000804 1.6e-27 125.9 161 53.4
OsKitaake04g165300 Oryza sativa Kitaake HOM05M000535 ORTHO05M000804 3.8e-26 121.3 159 54.1
TRIDC5BG079330 Triticum dicoccoides HOM05M000535 ORTHO05M000804 2.5e-25 118.6 156 54.5
Asa3G05071 Allium sativum HOM05M000535 ORTHO05M000804 7.3e-25 117.1 88 78.4
AET6Gv20951100 Aegilops tauschii HOM05M000535 ORTHO05M000804 9.5e-25 116.7 88 78.4
Sobic.010G201266 Sorghum bicolor HOM05M000535 ORTHO05M000804 9.5e-25 116.7 88 78.4
TRITD6Av1G021980 Triticum turgidum HOM05M000535 ORTHO05M000804 9.5e-25 116.7 88 78.4
OsR498G0408751200.01 Oryza sativa ssp. indica HOM05M000535 ORTHO05M000804 6.1e-24 114.0 153 52.3
Asa0G01432 Allium sativum HOM05M000535 ORTHO05M000804 8.0e-24 113.6 87 77.0
DDU125G0045 Dioscorea dumetorum HOM05M000535 ORTHO05M000804 8.0e-24 113.6 160 53.8
DDU581G0029 Dioscorea dumetorum HOM05M000535 ORTHO05M000804 8.0e-24 113.6 160 53.8
DDU643G0018 Dioscorea dumetorum HOM05M000535 ORTHO05M000804 8.0e-24 113.6 160 53.8
DDU747G0002 Dioscorea dumetorum HOM05M000535 ORTHO05M000804 8.0e-24 113.6 160 53.8
Asa3G01532 Allium sativum HOM05M000535 ORTHO05M000804 1.8e-23 112.5 88 76.1
Asa6G04838 Allium sativum HOM05M000535 ORTHO05M000804 6.8e-23 110.5 155 51.6
Asa2G00315 Allium sativum HOM05M000535 ORTHO05M000804 3.4e-22 108.2 148 53.4
Horvu_MOREX_2H01G436300 Hordeum vulgare HOM05M000535 ORTHO05M000804 4.4e-22 107.8 157 49.7
Zm00007a00035079 Zea mays B104 HOM05M000535 ORTHO05M001562 5.7e-22 107.5 64 90.6
AET0Gv20043700 Aegilops tauschii HOM05M000535 ORTHO05M000804 7.5e-22 107.1 74 83.8
OsR498G0101138400.01 Oryza sativa ssp. indica HOM05M000535 ORTHO05M000804 9.8e-22 106.7 67 89.6
SEGI_37255 Sequoiadendron giganteum HOM05M000535 ORTHO05M000804 9.8e-22 106.7 162 49.4
TRIDC6AG019690 Triticum dicoccoides HOM05M000535 ORTHO05M000804 9.8e-22 106.7 67 89.6
AET4Gv20764500 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.3e-21 106.3 87 77.0
TRIDC4AG059940 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.3e-21 106.3 87 77.0
TRIDC4BG024100 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.3e-21 106.3 87 77.0
DDU125G0044 Dioscorea dumetorum HOM05M000535 ORTHO05M000804 3.7e-21 104.8 87 77.0
DDU524G0209 Dioscorea dumetorum HOM05M000535 ORTHO05M000804 3.7e-21 104.8 87 77.0
DDU747G0003 Dioscorea dumetorum HOM05M000535 ORTHO05M000804 3.7e-21 104.8 87 77.0
Horvu_MOREX_2H01G371000 Hordeum vulgare HOM05M000535 ORTHO05M000804 2.4e-20 102.1 81 76.5
OsKitaake01g191150 Oryza sativa Kitaake HOM05M000535 ORTHO05M000804 3.2e-20 101.7 84 75.0
AET3Gv20206400 Aegilops tauschii HOM05M000535 ORTHO05M000804 4.1e-20 101.3 88 72.7
Asa6G02485 Allium sativum HOM05M000535 ORTHO05M000804 9.2e-20 100.1 61 90.2
TRIDC7BG013600 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.6e-19 99.4 87 71.3
Horvu_MOREX_2H01G760000 Hordeum vulgare HOM05M000535 ORTHO05M000804 2.0e-19 99.0 81 75.3
Horvu_MOREX_3H01G461000 Hordeum vulgare HOM05M000535 ORTHO05M000804 3.5e-19 98.2 81 74.1
TRITD1Bv1G206480 Triticum turgidum HOM05M000535 ORTHO05M000804 3.5e-19 98.2 87 72.4
Horvu_MOREX_Un01G094500 Hordeum vulgare HOM05M000535 ORTHO05M000804 4.6e-19 97.8 81 74.1
Solyc02g011900.1 Solanum lycopersicum HOM05M000535 ORTHO05M000804 1.7e-18 95.9 66 81.8
TraesCS5D03G0775600 Triticum aestivum HOM05M000535 ORTHO05M000804 2.3e-18 95.5 81 72.8
Asa6G02647 Allium sativum HOM05M000535 ORTHO05M000804 3.0e-18 95.1 87 73.6
GWHGAORA022247 Cenchrus purpureus HOM05M000535 ORTHO05M000804 3.0e-18 95.1 147 47.6
TRITD2Bv1G154020 Triticum turgidum HOM05M000535 ORTHO05M000804 2.5e-17 92.0 141 46.8
Glyma.05G094500 Glycine max HOM05M000535 ORTHO05M000804 3.3e-17 91.7 65 80.0
Solyc09g055840.1 Solanum lycopersicum HOM05M000535 ORTHO05M000804 2.3e-15 85.5 57 84.2
Solyc12g027820.1 Solanum lycopersicum HOM05M000535 ORTHO05M000804 5.2e-15 84.3 57 84.2
TRIDC2BG047530 Triticum dicoccoides HOM05M000535 ORTHO05M000804 6.8e-15 84.0 128 46.9
AET0Gv20061000 Aegilops tauschii HOM05M000535 ORTHO05M000804 4.4e-14 81.3 57 78.9
TraesCSU03G0507800 Triticum aestivum HOM05M000535 ORTHO05M000804 4.4e-14 81.3 57 78.9
Horvu_MOREX_6H01G289600 Hordeum vulgare HOM05M000535 ORTHO05M000804 5.8e-14 80.9 82 63.4
V3.Lp_chr3_0G1394 Lolium perenne HOM05M000535 ORTHO05M000804 5.8e-14 80.9 68 73.5
AET3Gv20001700 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.7e-13 79.3 57 77.2
AET5Gv20842600 Aegilops tauschii HOM05M000535 ORTHO05M000804 1.7e-13 79.3 57 77.2
Misin18G151600 Miscanthus sinensis HOM05M000535 ORTHO05M000804 1.7e-13 79.3 99 55.6
TraesCS6B03G0738500 Triticum aestivum HOM05M000535 ORTHO05M000804 1.7e-13 79.3 57 77.2
TraesCS7A03G0939100 Triticum aestivum HOM05M000535 ORTHO05M000804 1.7e-13 79.3 57 77.2
TRIDC2BG048440 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.7e-13 79.3 57 77.2
Glyma.01G201500 Glycine max HOM05M000535 ORTHO05M000804 2.2e-13 79.0 57 78.9
SMO086G0067 Selaginella moellendorffii HOM05M000535 ORTHO05M000804 3.7e-13 78.2 215 37.7
Zm00007a00003992 Zea mays B104 HOM05M000535 ORTHO05M003601 3.7e-13 78.2 56 80.4
Solyc03g122010.1 Solanum lycopersicum HOM05M000535 ORTHO05M000804 4.9e-13 77.8 68 72.1
TraesCS1D03G0338800 Triticum aestivum HOM05M000535 ORTHO05M000804 4.9e-13 77.8 57 73.7
Asa0G05396 Allium sativum HOM05M000535 ORTHO05M000804 1.1e-12 76.6 68 70.6
TRIDC6BG058040 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.1e-12 76.6 57 75.4
TRIDC7AG054090 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.4e-12 76.3 54 77.8
TRIDC2AG014140 Triticum dicoccoides HOM05M000535 ORTHO05M000804 3.2e-12 75.1 57 73.7
AET4Gv20432700 Aegilops tauschii HOM05M000535 ORTHO05M000804 7.0e-12 73.9 57 71.9
TraesCS5D03G0952100 Triticum aestivum HOM05M000535 ORTHO05M000804 1.2e-11 73.2 57 73.7
Aco020233 Ananas comosus HOM05M000535 ORTHO05M000804 4.6e-11 71.2 85 58.8
TRIDC4AG024240 Triticum dicoccoides HOM05M000535 ORTHO05M000804 7.8e-11 70.5 57 68.4
Solyc01g017170.1 Solanum lycopersicum HOM05M000535 ORTHO05M000804 1.0e-10 70.1 46 89.1
TraesCS6B03G0604900 Triticum aestivum HOM05M000535 ORTHO05M000804 1.3e-10 69.7 57 71.9
Misin06G121700 Miscanthus sinensis HOM05M000535 ORTHO05M000804 3.9e-10 68.2 51 76.5
TRIDC6BG034260 Triticum dicoccoides HOM05M000535 ORTHO05M000804 1.5e-09 66.2 52 73.1
OB05G25860 Oryza brachyantha HOM05M000535 ORTHO05M000804 2.5e-09 65.5 46 76.1
Solyc09g050069.1 Solanum lycopersicum HOM05M000535 ORTHO05M020591 8.1e-08 60.5 82 53.7
OB06G26620 Oryza brachyantha HOM05M000535 ORTHO05M000804 1.4e-07 59.7 50 74.0
Aco024916 Ananas comosus HOM05M000535 ORTHO05M000804 5.8e-06 54.3 34 91.2


User provided reference genes

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