Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g070410.3 Solanum lycopersicum HOM05M002611 ORTHO05M248765 1.8e-96 355.1 180 100.0
Aco003916 Ananas comosus HOM05M002611 ORTHO05M003293 3.4e-18 95.1 207 34.8
p5.00_sc00095_p0027 Elaeis guineensis HOM05M002611 ORTHO05M003293 1.2e-15 86.7 257 30.0
evm.TU.AsparagusV1_06.1980.V1.1 Asparagus officinalis HOM05M002611 ORTHO05M003293 2.7e-15 85.5 262 30.2
DDU886G0003 Dioscorea dumetorum HOM05M002611 ORTHO05M003293 3.5e-15 85.1 258 30.6
DDU407G0322 Dioscorea dumetorum HOM05M002611 ORTHO05M003293 7.8e-15 84.0 216 32.4
Ot_Chr4_g00846 Oropetium thomaeum HOM05M002611 ORTHO05M003293 7.8e-15 84.0 244 29.9
Aco005116 Ananas comosus HOM05M002611 ORTHO05M003293 6.6e-14 80.9 259 29.0
Spipo9G0016300 Spirodela polyrhiza HOM05M002611 ORTHO05M003293 8.6e-14 80.5 259 28.6
Potri.004G117900 Populus trichocarpa HOM05M002611 ORTHO05M003293 1.5e-13 79.7 275 28.4
AT5G15810 Arabidopsis thaliana HOM05M002611 ORTHO05M003293 2.5e-13 79.0 265 29.1
EJB05_22375 Eragrostis curvula HOM05M002611 ORTHO05M003293 3.3e-13 78.6 195 32.3
Aco019819 Ananas comosus HOM05M002611 ORTHO05M003293 9.5e-13 77.0 260 29.2
AT3G02320 Arabidopsis thaliana HOM05M002611 ORTHO05M003293 1.2e-12 76.6 265 29.4
DDU411G0006 Dioscorea dumetorum HOM05M002611 ORTHO05M003293 1.6e-12 76.3 226 29.6
HPP92_012207 Vanilla planifolia HOM05M002611 ORTHO05M003293 2.1e-12 75.9 275 26.5
HPP92_012242 Vanilla planifolia HOM05M002611 ORTHO05M003293 2.1e-12 75.9 275 26.5
Potri.017G099200 Populus trichocarpa HOM05M002611 ORTHO05M003293 2.8e-12 75.5 275 27.6
Zm00001eb230770 Zea mays B73 HOM05M002611 ORTHO05M003293 2.8e-12 75.5 212 32.1
Zm00007a00032842 Zea mays B104 HOM05M002611 ORTHO05M003293 2.8e-12 75.5 212 32.1
OsKitaake10g069100 Oryza sativa Kitaake HOM05M002611 ORTHO05M003293 3.6e-12 75.1 210 31.4
Sspon.01G0030910-1P Saccharum spontaneum HOM05M002611 ORTHO05M003293 3.6e-12 75.1 203 32.0
CALSI_Maker00020216 Calamus simplicifolius HOM05M002611 ORTHO05M003293 4.7e-12 74.7 261 27.2
Ma10_g09220 Musa acuminata HOM05M002611 ORTHO05M003293 6.2e-12 74.3 274 26.6
CDE04G3698 Ceratophyllum demersum HOM05M002611 ORTHO05M003293 8.1e-12 73.9 260 29.2
Glyma.13G053100 Glycine max HOM05M002611 ORTHO05M003293 8.1e-12 73.9 279 26.9
Glyma.19G033700 Glycine max HOM05M002611 ORTHO05M003293 8.1e-12 73.9 279 26.9
Bradi1g57370 Brachypodium distachyon HOM05M002611 ORTHO05M003293 1.1e-11 73.6 274 25.9
Os10g0357800 Oryza sativa ssp. japonica HOM05M002611 ORTHO05M003293 1.1e-11 73.6 214 30.8
V3.Lp_chr2_0G11886 Lolium perenne HOM05M002611 ORTHO05M003293 1.4e-11 73.2 268 25.7
PH02Gene08295 Phyllostachys edulis HOM05M002611 ORTHO05M003293 1.4e-11 73.2 274 25.5
Seita.4G130900 Setaria italica HOM05M002611 ORTHO05M003293 1.4e-11 73.2 198 30.8
Sevir.4G186200 Setaria viridis HOM05M002611 ORTHO05M003293 1.4e-11 73.2 198 30.8
Bradi1g66740 Brachypodium distachyon HOM05M002611 ORTHO05M003293 1.8e-11 72.8 274 25.5
EJB05_07195 Eragrostis curvula HOM05M002611 ORTHO05M003293 1.8e-11 72.8 273 26.4
Misin08G019500 Miscanthus sinensis HOM05M002611 ORTHO05M003293 1.8e-11 72.8 212 32.1
TraesCS2A03G0216900 Triticum aestivum HOM05M002611 ORTHO05M003293 1.8e-11 72.8 213 31.0
TRIDC2AG012550 Triticum dicoccoides HOM05M002611 ORTHO05M003293 1.8e-11 72.8 213 31.0
TRITD2Av1G028200 Triticum turgidum HOM05M002611 ORTHO05M003293 1.8e-11 72.8 213 31.0
GWHGAORA016492 Cenchrus purpureus HOM05M002611 ORTHO05M003293 2.3e-11 72.4 191 31.9
CDE07G0251 Ceratophyllum demersum HOM05M002611 ORTHO05M003293 2.3e-11 72.4 257 27.6
Zm00001eb061890 Zea mays B73 HOM05M002611 ORTHO05M003293 3.1e-11 72.0 236 29.2
Zm00007a00005131 Zea mays B104 HOM05M002611 ORTHO05M003293 3.1e-11 72.0 236 29.2
CDE07G0024 Ceratophyllum demersum HOM05M002611 ORTHO05M003293 4.0e-11 71.6 270 28.5
Dexi9B01G0039040 Digitaria exilis HOM05M002611 ORTHO05M003293 4.0e-11 71.6 279 25.4
ATR0827G075 Amborella trichopoda HOM05M002611 ORTHO05M003293 5.2e-11 71.2 267 27.7
GWHGAZTO007920 Oryza alta HOM05M002611 ORTHO05M003293 5.2e-11 71.2 238 29.4
Zosma06g22560 Zostera marina HOM05M002611 ORTHO05M003293 5.2e-11 71.2 258 27.5
V3.Lp_chr4_0G18982 Lolium perenne HOM05M002611 ORTHO05M003293 6.8e-11 70.9 273 25.6
Ma06_g26330 Musa acuminata HOM05M002611 ORTHO05M003293 6.8e-11 70.9 221 30.8
GWHGAZTO060504 Oryza alta HOM05M002611 ORTHO05M003293 6.8e-11 70.9 214 30.4
PH02Gene20059 Phyllostachys edulis HOM05M002611 ORTHO05M003293 6.8e-11 70.9 216 30.6
TRIDC2BG015340 Triticum dicoccoides HOM05M002611 ORTHO05M003293 6.8e-11 70.9 213 31.5
TRITD2Bv1G036520 Triticum turgidum HOM05M002611 ORTHO05M003293 6.8e-11 70.9 213 31.5
PH02Gene03533 Phyllostachys edulis HOM05M002611 ORTHO05M003293 8.9e-11 70.5 260 26.5
TraesCS2B03G0297200 Triticum aestivum HOM05M002611 ORTHO05M003293 1.2e-10 70.1 213 30.5
AET2Gv20211800 Aegilops tauschii HOM05M002611 ORTHO05M003293 1.5e-10 69.7 213 30.0
GWHGAORA027085 Cenchrus purpureus HOM05M002611 ORTHO05M003293 1.5e-10 69.7 260 26.5
GWHGASIY006481 Secale cereale HOM05M002611 ORTHO05M003293 1.5e-10 69.7 213 31.5
TraesCS2D03G0222100 Triticum aestivum HOM05M002611 ORTHO05M003293 1.5e-10 69.7 213 30.0
Mapoly0103s0023 Marchantia polymorpha HOM05M002611 ORTHO05M003293 2.0e-10 69.3 266 27.4
p5.00_sc00011_p0044 Elaeis guineensis HOM05M002611 ORTHO05M003293 2.6e-10 68.9 268 26.1
AET4Gv20533800 Aegilops tauschii HOM05M002611 ORTHO05M003293 3.4e-10 68.6 268 25.7
GWHGASIY038539 Secale cereale HOM05M002611 ORTHO05M003293 3.4e-10 68.6 262 25.6
SEGI_16900 Sequoiadendron giganteum HOM05M002611 ORTHO05M003293 3.4e-10 68.6 145 35.9
Seita.9G462100 Setaria italica HOM05M002611 ORTHO05M003293 3.4e-10 68.6 261 26.1
TraesCS4D03G0512600 Triticum aestivum HOM05M002611 ORTHO05M003293 3.4e-10 68.6 268 25.7
Bradi3g15962 Brachypodium distachyon HOM05M002611 ORTHO05M003293 4.4e-10 68.2 214 29.9
GWHGAORA055435 Cenchrus purpureus HOM05M002611 ORTHO05M003293 4.4e-10 68.2 261 26.1
Misin02G411500 Miscanthus sinensis HOM05M002611 ORTHO05M003293 4.4e-10 68.2 273 25.6
TraesCS4A03G0198000 Triticum aestivum HOM05M002611 ORTHO05M003293 4.4e-10 68.2 268 25.4
TraesCS4B03G0577300 Triticum aestivum HOM05M002611 ORTHO05M003293 4.4e-10 68.2 268 25.4
TRIDC4BG037260 Triticum dicoccoides HOM05M002611 ORTHO05M003293 4.4e-10 68.2 268 25.4
TRITD4Bv1G127640 Triticum turgidum HOM05M002611 ORTHO05M003293 4.4e-10 68.2 268 25.4
Sspon.01G0006350-1P Saccharum spontaneum HOM05M002611 ORTHO05M003293 5.8e-10 67.8 273 25.3
Sspon.01G0006350-2P Saccharum spontaneum HOM05M002611 ORTHO05M003293 5.8e-10 67.8 273 25.3
Sobic.001G422500 Sorghum bicolor HOM05M002611 ORTHO05M003293 5.8e-10 67.8 273 25.3
TRITD4Av1G043400 Triticum turgidum HOM05M002611 ORTHO05M003293 7.6e-10 67.4 265 25.3
Sspon.01G0006350-2C Saccharum spontaneum HOM05M002611 ORTHO05M003293 9.9e-10 67.0 297 25.6
Horvu_MOREX_4H01G329900 Hordeum vulgare HOM05M002611 ORTHO05M003293 1.3e-09 66.6 261 26.1
Misin01G403100 Miscanthus sinensis HOM05M002611 ORTHO05M003293 1.3e-09 66.6 273 25.6
Sevir.9G465400 Setaria viridis HOM05M002611 ORTHO05M003293 1.3e-09 66.6 261 25.7
Solyc02g089175.2 Solanum lycopersicum HOM05M002611 ORTHO05M003293 1.7e-09 66.2 145 37.2
Zm00007a00002034 Zea mays B104 HOM05M002611 ORTHO05M003293 1.7e-09 66.2 266 25.6
Zjn_sc00003.1.g05150.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002611 ORTHO05M003293 1.7e-09 66.2 241 24.1
Horvu_MOREX_2H01G116400 Hordeum vulgare HOM05M002611 ORTHO05M003293 2.2e-09 65.9 221 29.9
Sspon.01G0006350-1A Saccharum spontaneum HOM05M002611 ORTHO05M003293 2.2e-09 65.9 300 25.3
Sspon.04G0029430-1B Saccharum spontaneum HOM05M002611 ORTHO05M003293 2.9e-09 65.5 142 39.4
Zjn_sc00002.1.g06510.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002611 ORTHO05M003293 2.9e-09 65.5 270 25.9
CALSI_Maker00033810 Calamus simplicifolius HOM05M002611 ORTHO05M003293 3.7e-09 65.1 168 32.1
Ot_Chr1_gn30839 Oropetium thomaeum HOM05M002611 ORTHO05M003293 4.9e-09 64.7 129 34.9
GWHGAZTO076906 Oryza alta HOM05M002611 ORTHO05M003293 1.1e-08 63.5 254 26.8
Sspon.01G0030910-2D Saccharum spontaneum HOM05M002611 ORTHO05M003293 1.4e-08 63.2 156 34.6
Misin13G102400 Miscanthus sinensis HOM05M002611 ORTHO05M003293 1.9e-08 62.8 243 27.2
SMO203G0237 Selaginella moellendorffii HOM05M002611 ORTHO05M003293 4.1e-08 61.6 212 30.2
GWHGAZTO027026 Oryza alta HOM05M002611 ORTHO05M003293 1.2e-07 60.1 243 27.2
PH02Gene00188 Phyllostachys edulis HOM05M002611 ORTHO05M003293 1.2e-07 60.1 280 23.2
OsKitaake03g366400 Oryza sativa Kitaake HOM05M002611 ORTHO05M003293 1.6e-07 59.7 254 26.4
OsR498G0307172700.01 Oryza sativa ssp. indica HOM05M002611 ORTHO05M003293 1.6e-07 59.7 254 26.4
Os03g0786700 Oryza sativa ssp. japonica HOM05M002611 ORTHO05M003293 1.6e-07 59.7 254 26.4
Pahal.9G515600 Panicum hallii HOM05M002611 ORTHO05M003293 1.6e-07 59.7 261 25.7
CBR_g3723 Chara braunii HOM05M002611 ORTHO05M003293 2.7e-07 58.9 144 32.6
Sobic.004G023700 Sorghum bicolor HOM05M002611 ORTHO05M003293 4.6e-07 58.2 146 32.2
Pp3c16_12880 Physcomitrium patens HOM05M002611 ORTHO05M003293 7.8e-07 57.4 145 33.1
Sspon.01G0030910-1A Saccharum spontaneum HOM05M002611 ORTHO05M003293 1.7e-06 56.2 114 34.2
OB10G13880 Oryza brachyantha HOM05M002611 ORTHO05M003293 3.9e-06 55.1 125 31.2


User provided reference genes

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