Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g075610.4 Solanum lycopersicum HOM05M003668 ORTHO05M004650 4.8e-205 716.8 364 100.0
Solyc08g081410.3 Solanum lycopersicum HOM05M003668 ORTHO05M004650 1.1e-129 466.5 461 60.3
Potri.001G343500 Populus trichocarpa HOM05M003668 ORTHO05M004650 3.9e-98 361.7 468 47.0
Glyma.19G056700 Glycine max HOM05M003668 ORTHO05M004650 8.8e-90 334.0 469 45.4
Glyma.19G003200 Glycine max HOM05M003668 ORTHO05M004650 2.2e-85 319.3 292 58.9
AT3G27530 Arabidopsis thaliana HOM05M003668 ORTHO05M004650 3.3e-81 305.4 470 41.5
p5.00_sc00156_p0005 Elaeis guineensis HOM05M003668 ORTHO05M004650 1.4e-79 300.1 469 42.2
DDU407G0229 Dioscorea dumetorum HOM05M003668 ORTHO05M004650 4.1e-79 298.5 470 41.3
MBI14_g36922_MAGBIO Magnolia biondii HOM05M003668 ORTHO05M004650 2.0e-78 296.2 468 40.4
CALSI_Maker00013352 Calamus simplicifolius HOM05M003668 ORTHO05M004650 6.1e-75 284.6 462 40.3
Ma11_g17440 Musa acuminata HOM05M003668 ORTHO05M004650 4.4e-73 278.5 458 40.0
Aco006379 Ananas comosus HOM05M003668 ORTHO05M004650 6.3e-72 274.6 470 39.8
PH02Gene18523 Phyllostachys edulis HOM05M003668 ORTHO05M004650 1.0e-69 267.3 464 37.7
Zosma01g25290 Zostera marina HOM05M003668 ORTHO05M004650 1.9e-68 263.1 349 44.1
GWHGAZTO067218 Oryza alta HOM05M003668 ORTHO05M004650 2.5e-68 262.7 287 47.7
PH02Gene37870 Phyllostachys edulis HOM05M003668 ORTHO05M004650 5.5e-68 261.5 465 37.0
Seita.3G343800 Setaria italica HOM05M003668 ORTHO05M004650 9.4e-68 260.8 465 37.2
Sevir.3G359300 Setaria viridis HOM05M003668 ORTHO05M004650 9.4e-68 260.8 465 37.2
Bradi4g05600 Brachypodium distachyon HOM05M003668 ORTHO05M004650 1.6e-67 260.0 464 36.2
HPP92_017150 Vanilla planifolia HOM05M003668 ORTHO05M004650 1.6e-67 260.0 308 46.8
ATR0068G094 Amborella trichopoda HOM05M003668 ORTHO05M004650 2.1e-67 259.6 357 43.4
GWHGAORA035156 Cenchrus purpureus HOM05M003668 ORTHO05M004650 2.1e-67 259.6 287 48.8
OsKitaake12g164500 Oryza sativa Kitaake HOM05M003668 ORTHO05M004650 3.6e-67 258.8 464 36.2
Os12g0538900 Oryza sativa ssp. japonica HOM05M003668 ORTHO05M004650 3.6e-67 258.8 464 36.2
HPP92_017154 Vanilla planifolia HOM05M003668 ORTHO05M004650 3.6e-67 258.8 303 47.2
OsR498G1221775200.01 Oryza sativa ssp. indica HOM05M003668 ORTHO05M004650 4.7e-67 258.5 464 36.2
Pahal.3G452900 Panicum hallii HOM05M003668 ORTHO05M004650 4.7e-67 258.5 464 37.5
Ot_Chr10_g24103 Oropetium thomaeum HOM05M003668 ORTHO05M004650 6.1e-67 258.1 464 35.8
GWHGAZTO015336 Oryza alta HOM05M003668 ORTHO05M004650 1.0e-66 257.3 465 36.1
Sspon.02G0028110-3C Saccharum spontaneum HOM05M003668 ORTHO05M004650 1.4e-66 256.9 464 36.4
Sspon.02G0028110-1A Saccharum spontaneum HOM05M003668 ORTHO05M004650 1.8e-66 256.5 464 36.4
Sspon.02G0028110-4D Saccharum spontaneum HOM05M003668 ORTHO05M004650 1.8e-66 256.5 463 36.5
V3.Lp_chr5_0G4776 Lolium perenne HOM05M003668 ORTHO05M004650 2.3e-66 256.1 299 47.2
OB12G21940 Oryza brachyantha HOM05M003668 ORTHO05M004650 2.3e-66 256.1 287 46.3
Sobic.008G118200 Sorghum bicolor HOM05M003668 ORTHO05M004650 2.3e-66 256.1 464 36.4
GWHGAORA013609 Cenchrus purpureus HOM05M003668 ORTHO05M004650 5.2e-66 255.0 287 47.7
Misin14G106300 Miscanthus sinensis HOM05M003668 ORTHO05M004650 5.2e-66 255.0 463 35.2
Spipo18G0020500 Spirodela polyrhiza HOM05M003668 ORTHO05M004650 6.7e-66 254.6 467 38.3
TraesCS5D03G0250900 Triticum aestivum HOM05M003668 ORTHO05M004650 8.8e-66 254.2 297 45.1
GWHGASIY024941 Secale cereale HOM05M003668 ORTHO05M004650 1.2e-65 253.8 297 45.1
GWHGASIY024942 Secale cereale HOM05M003668 ORTHO05M004650 1.2e-65 253.8 297 45.1
TraesCS5B03G0256100 Triticum aestivum HOM05M003668 ORTHO05M004650 1.5e-65 253.4 297 45.1
TRITD5Bv1G047930 Triticum turgidum HOM05M003668 ORTHO05M004650 1.5e-65 253.4 297 45.1
EJB05_01292 Eragrostis curvula HOM05M003668 ORTHO05M004650 4.4e-65 251.9 467 36.6
Misin15G127200 Miscanthus sinensis HOM05M003668 ORTHO05M004650 4.4e-65 251.9 464 36.6
Zm00001eb410430 Zea mays B73 HOM05M003668 ORTHO05M004650 5.7e-65 251.5 468 36.1
Zm00007a00008579 Zea mays B104 HOM05M003668 ORTHO05M004650 5.7e-65 251.5 468 36.1
Horvu_MOREX_5H01G157700 Hordeum vulgare HOM05M003668 ORTHO05M004650 9.7e-65 250.8 458 35.2
TraesCS5A03G0238700 Triticum aestivum HOM05M003668 ORTHO05M004650 1.3e-64 250.4 297 45.1
TRIDC5AG015170 Triticum dicoccoides HOM05M003668 ORTHO05M004650 1.3e-64 250.4 297 45.1
TRITD5Av1G052000 Triticum turgidum HOM05M003668 ORTHO05M004650 1.3e-64 250.4 297 45.1
Zjn_sc00038.1.g01550.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003668 ORTHO05M004650 1.7e-64 250.0 287 46.0
TRIDC5BG016590 Triticum dicoccoides HOM05M003668 ORTHO05M004650 2.2e-64 249.6 297 45.8
Zm00001eb137680 Zea mays B73 HOM05M003668 ORTHO05M004650 8.2e-64 247.7 465 35.5
evm.TU.AsparagusV1_01.3356.V1.1 Asparagus officinalis HOM05M003668 ORTHO05M004650 1.2e-57 227.3 451 35.7
MBI14_g35409_MAGBIO Magnolia biondii HOM05M003668 ORTHO05M004650 2.0e-57 226.5 423 37.8
Sspon.02G0028110-2B Saccharum spontaneum HOM05M003668 ORTHO05M004650 9.1e-55 217.6 255 46.3
Zm00007a00016983 Zea mays B104 HOM05M003668 ORTHO05M004650 5.9e-54 214.9 433 34.4
Asa2G02316 Allium sativum HOM05M003668 ORTHO05M004650 5.7e-49 198.4 206 51.9
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05M003668 ORTHO05M004650 3.1e-47 192.6 322 38.8
Pp3c3_27420 Physcomitrium patens HOM05M003668 ORTHO05M004650 1.3e-45 187.2 474 30.6
Mapoly0097s0078 Marchantia polymorpha HOM05M003668 ORTHO05M004650 2.9e-45 186.0 323 36.2
SMO367G1196 Selaginella moellendorffii HOM05M003668 ORTHO05M004650 5.6e-44 181.8 354 35.3
MBI14_g31103_MAGBIO Magnolia biondii HOM05M003668 ORTHO05M004650 5.4e-39 165.2 407 32.4
CDE02G4242 Ceratophyllum demersum HOM05M003668 ORTHO05M004650 3.6e-35 152.5 408 29.2
CDE09G0700 Ceratophyllum demersum HOM05M003668 ORTHO05M004650 3.4e-25 119.4 130 46.2
Dexi3B01G0033110 Digitaria exilis HOM05M003668 ORTHO05M004650 5.8e-25 118.6 319 31.3
MCO05G130 Micromonas commoda HOM05M003668 ORTHO05M004650 2.4e-18 96.7 318 25.8
CDE09G0158 Ceratophyllum demersum HOM05M003668 ORTHO05M004650 6.0e-14 82.0 169 36.1
PRCOL_00005576 Prasinoderma coloniale HOM05M003668 ORTHO05M004650 2.0e-09 67.0 238 24.4
Asa2G02315 Allium sativum HOM05M003668 ORTHO05M004650 2.4e-07 60.1 82 54.9
CBR_g57070 Chara braunii HOM05M003668 ORTHO05M004650 9.3e-07 58.2 247 25.9
Dexi3A01G0031740 Digitaria exilis HOM05M003668 ORTHO05M004650 6.0e-06 55.5 44 65.9
Zm00001eb068810 Zea mays B73 HOM05M003668 ORTHO05M004650 6.0e-06 55.5 50 62.0
Zm00007a00045509 Zea mays B104 HOM05M003668 ORTHO05M004650 6.0e-06 55.5 44 65.9


User provided reference genes

Program Settings