Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g071750.3 Solanum lycopersicum HOM05M004062 ORTHO05M004817 7.7e-109 396.4 196 100.0
Solyc03g005930.3 Solanum lycopersicum HOM05M004062 ORTHO05M004817 9.5e-75 283.1 188 76.1
Potri.011G075600 Populus trichocarpa HOM05M004062 ORTHO05M004817 3.3e-67 258.1 177 68.4
Glyma.05G163100 Glycine max HOM05M004062 ORTHO05M004817 2.0e-56 222.2 174 56.9
Potri.001G324500 Populus trichocarpa HOM05M004062 ORTHO05M004817 9.9e-56 219.9 190 56.3
Ma03_g16990 Musa acuminata HOM05M004062 ORTHO05M004817 1.3e-55 219.5 174 60.9
AT4G18930 Arabidopsis thaliana HOM05M004062 ORTHO05M004817 2.9e-55 218.4 179 58.7
ATR0602G011 Amborella trichopoda HOM05M004062 ORTHO05M004817 6.4e-55 217.2 174 59.8
Potri.017G062400 Populus trichocarpa HOM05M004062 ORTHO05M004817 2.4e-54 215.3 180 58.3
OsKitaake05g228200 Oryza sativa Kitaake HOM05M004062 ORTHO05M004817 6.0e-53 210.7 175 58.9
Os05g0517900 Oryza sativa ssp. japonica HOM05M004062 ORTHO05M004817 6.0e-53 210.7 175 58.9
OsR498G0511186500.01 Oryza sativa ssp. indica HOM05M004062 ORTHO05M004817 1.3e-52 209.5 175 58.9
GWHGAZTO084667 Oryza alta HOM05M004062 ORTHO05M004817 5.1e-52 207.6 175 58.3
Asa7G04810 Allium sativum HOM05M004062 ORTHO05M004817 8.7e-52 206.8 176 54.0
Ot_Chr5_g03570 Oropetium thomaeum HOM05M004062 ORTHO05M004817 2.5e-51 205.3 175 57.7
PH02Gene07995 Phyllostachys edulis HOM05M004062 ORTHO05M004817 2.5e-51 205.3 176 58.5
EJB05_36800 Eragrostis curvula HOM05M004062 ORTHO05M004817 3.3e-51 204.9 175 58.3
evm.TU.AsparagusV1_01.3479.V1.1 Asparagus officinalis HOM05M004062 ORTHO05M004817 4.3e-51 204.5 176 56.8
DDU613G0090 Dioscorea dumetorum HOM05M004062 ORTHO05M004817 4.3e-51 204.5 175 56.0
Misin17G201400 Miscanthus sinensis HOM05M004062 ORTHO05M004817 5.6e-51 204.1 175 57.1
Sspon.07G0004180-1A Saccharum spontaneum HOM05M004062 ORTHO05M004817 5.6e-51 204.1 175 56.0
Zm00007a00006914 Zea mays B104 HOM05M004062 ORTHO05M004817 5.6e-51 204.1 174 57.5
Misin16G202200 Miscanthus sinensis HOM05M004062 ORTHO05M004817 7.4e-51 203.8 175 56.6
GWHGAZTO035735 Oryza alta HOM05M004062 ORTHO05M004817 7.4e-51 203.8 170 59.4
Sspon.07G0004180-3D Saccharum spontaneum HOM05M004062 ORTHO05M004817 9.6e-51 203.4 175 56.6
HPP92_006379 Vanilla planifolia HOM05M004062 ORTHO05M004817 9.6e-51 203.4 171 56.1
Sobic.009G199800 Sorghum bicolor HOM05M004062 ORTHO05M004817 2.8e-50 201.8 175 56.6
CDE02G4586 Ceratophyllum demersum HOM05M004062 ORTHO05M004817 4.8e-50 201.1 173 54.9
Sevir.3G181400 Setaria viridis HOM05M004062 ORTHO05M004817 4.8e-50 201.1 175 56.0
Pahal.3G212100 Panicum hallii HOM05M004062 ORTHO05M004817 8.1e-50 200.3 175 55.4
Zjn_sc00012.1.g03880.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004062 ORTHO05M004817 1.8e-49 199.1 175 56.6
Seita.3G177400 Setaria italica HOM05M004062 ORTHO05M004817 2.4e-49 198.7 175 55.4
Bradi2g19680 Brachypodium distachyon HOM05M004062 ORTHO05M004817 1.2e-48 196.4 177 55.4
GWHGAORA003593 Cenchrus purpureus HOM05M004062 ORTHO05M004817 2.6e-48 195.3 172 55.8
GWHGAORA038557 Cenchrus purpureus HOM05M004062 ORTHO05M004817 2.6e-48 195.3 172 55.2
p5.00_sc00059_p0095 Elaeis guineensis HOM05M002187 ORTHO05M004817 4.5e-48 194.5 171 56.7
AET1Gv20812800 Aegilops tauschii HOM05M004062 ORTHO05M004817 5.8e-48 194.1 176 56.2
TraesCS1D03G0805200 Triticum aestivum HOM05M004062 ORTHO05M004817 5.8e-48 194.1 176 56.2
TraesCS1B03G0960200 Triticum aestivum HOM05M004062 ORTHO05M004817 9.9e-48 193.4 176 55.7
TRIDC1BG056860 Triticum dicoccoides HOM05M004062 ORTHO05M004817 9.9e-48 193.4 176 55.7
TRITD1Bv1G186900 Triticum turgidum HOM05M004062 ORTHO05M004817 9.9e-48 193.4 176 55.7
TraesCS1A03G0836300 Triticum aestivum HOM05M004062 ORTHO05M004817 2.2e-47 192.2 176 55.1
TRITD1Av1G197260 Triticum turgidum HOM05M004062 ORTHO05M004817 2.9e-47 191.8 176 55.1
GWHGASIY004383 Secale cereale HOM05M004062 ORTHO05M004817 4.9e-47 191.0 176 54.5
Horvu_MOREX_1H01G491100 Hordeum vulgare HOM05M004062 ORTHO05M004817 3.2e-46 188.3 176 53.4
Zosma06g27360 Zostera marina HOM05M004062 ORTHO05M004817 1.3e-44 183.0 178 50.6
AT4G18940 Arabidopsis thaliana HOM05M004062 ORTHO05M004817 6.2e-42 174.1 177 48.0
Asa4G01492 Allium sativum HOM05M004062 ORTHO05M004817 1.1e-41 173.3 176 47.7
Aco006027 Ananas comosus HOM05M002187 ORTHO05M002220 1.4e-41 172.9 168 54.8
EJB05_42894 Eragrostis curvula HOM05M004062 ORTHO05M004817 3.1e-41 171.8 171 51.5
Sspon.07G0004180-1P Saccharum spontaneum HOM05M004062 ORTHO05M004817 3.1e-41 171.8 176 50.6
SEGI_13714 Sequoiadendron giganteum HOM05M004062 ORTHO05M004817 9.0e-41 170.2 181 48.1
Spipo18G0018500 Spirodela polyrhiza HOM05M004062 ORTHO05M004817 1.5e-40 169.5 175 50.3
Dexi2B01G0015670 Digitaria exilis HOM05M004062 ORTHO05M004817 7.6e-40 167.2 175 50.3
Dexi2A01G0016670 Digitaria exilis HOM05M004062 ORTHO05M004817 1.7e-39 166.0 174 51.1
Dexi2A01G0016700 Digitaria exilis HOM05M004062 ORTHO05M004817 4.9e-39 164.5 175 51.4
GWHGAORA008228 Cenchrus purpureus HOM05M004062 ORTHO05M004817 7.9e-37 157.1 187 47.6
TRITD7Bv1G028810 Triticum turgidum HOM05M004062 ORTHO05M004817 5.1e-36 154.5 176 50.6
Horvu_MOREX_7H01G192100 Hordeum vulgare HOM05M004062 ORTHO05M004817 6.7e-36 154.1 176 50.0
TraesCS7B03G0196800 Triticum aestivum HOM05M004062 ORTHO05M004817 8.7e-36 153.7 176 50.0
GWHGASIY021111 Secale cereale HOM05M004062 ORTHO05M004817 2.5e-35 152.1 176 48.9
Zm00001eb293070 Zea mays B73 HOM05M004062 ORTHO05M004817 2.5e-35 152.1 174 47.7
TRITD7Av1G053620 Triticum turgidum HOM05M004062 ORTHO05M004817 3.3e-35 151.8 176 48.9
AET7Gv20437700 Aegilops tauschii HOM05M004062 ORTHO05M004817 1.6e-34 149.4 176 48.3
TraesCS7D03G0382500 Triticum aestivum HOM05M004062 ORTHO05M004817 1.6e-34 149.4 176 48.3
GWHGASIY021123 Secale cereale HOM05M004062 ORTHO05M004817 5.9e-32 141.0 176 47.7
Zjn_sc00027.1.g04350.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004062 ORTHO05M004817 8.5e-31 137.1 131 52.7
Sspon.07G0004180-2B Saccharum spontaneum HOM05M004062 ORTHO05M004817 4.2e-30 134.8 175 45.1
Mapoly0108s0044 Marchantia polymorpha HOM05M004062 ORTHO05M004817 6.1e-29 131.0 172 38.4
Sevir.2G202900 Setaria viridis HOM05M004062 ORTHO05M004817 2.3e-28 129.0 166 46.4
GWHGAORA064640 Cenchrus purpureus HOM05M004062 ORTHO05M004817 5.7e-27 124.4 145 46.9
TRIDC1AG049990 Triticum dicoccoides HOM05M004062 ORTHO05M004817 6.9e-25 117.5 92 62.0
CALSI_Maker00025521 Calamus simplicifolius HOM05M004062 ORTHO05M004817 4.5e-24 114.8 80 66.2
Asa7G04811 Allium sativum HOM05M004062 ORTHO05M004817 1.7e-23 112.8 94 54.3
CALSI_Maker00025497 Calamus simplicifolius HOM05M004062 ORTHO05M004817 2.2e-23 112.5 88 58.0
PH02Gene38144 Phyllostachys edulis HOM05M004062 ORTHO05M004817 7.2e-22 107.5 102 54.9
Dexi3B01G0019290 Digitaria exilis HOM05M004062 ORTHO05M004817 3.0e-20 102.1 96 52.1
Pp3c27_5980 Physcomitrium patens HOM05M004062 ORTHO05M004817 5.1e-20 101.3 185 36.8
CBR_g32499 Chara braunii HOM05M004062 ORTHO05M004817 6.7e-20 100.9 186 31.7
Cre10.g419600 Chlamydomonas reinhardtii HOM05M004062 ORTHO05M004817 2.0e-19 99.4 179 34.1
Dexi3A01G0018860 Digitaria exilis HOM05M004062 ORTHO05M004817 2.6e-19 99.0 91 51.6
AagrBONN_evm.TU.Sc2ySwM_117.2894 Anthoceros agrestis HOM05M004062 ORTHO05M004817 2.2e-18 95.9 127 39.4
Cre10.g419550 Chlamydomonas reinhardtii HOM05M004062 ORTHO05M004817 1.1e-17 93.6 181 34.3
TraesCS7A03G0397100 Triticum aestivum HOM05M004062 ORTHO05M004817 1.4e-17 93.2 176 37.5
evm.TU.AsparagusV1_05.987.V1.1 Asparagus officinalis HOM05M004062 ORTHO05M004817 1.2e-16 90.1 120 39.2
Pp3c5_14020 Physcomitrium patens HOM05M004062 ORTHO05M004817 2.0e-16 89.4 173 32.9
TRIDC7BG010890 Triticum dicoccoides HOM05M004062 ORTHO05M004817 6.3e-10 67.8 92 44.6
V3.Lp_chr1_0G17600 Lolium perenne HOM05M004062 ORTHO05M004817 1.4e-09 66.6 51 58.8
TRIDC7AG020800 Triticum dicoccoides HOM05M004062 ORTHO05M004817 1.4e-09 66.6 92 42.4
p5.00_sc00019_p0079 Elaeis guineensis HOM05M004062 ORTHO05M004817 2.6e-08 62.4 57 52.6
Glyma.20G224800 Glycine max HOM05M004062 ORTHO05M004817 1.7e-07 59.7 77 40.3
Zm00001eb353240 Zea mays B73 HOM05M004062 ORTHO05M004817 4.2e-06 55.1 93 37.6


User provided reference genes

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