Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067710.3 Solanum lycopersicum HOM05M002000 ORTHO05M002054 7.1e-196 686.4 371 100.0
Solyc02g086940.3 Solanum lycopersicum HOM05M002000 ORTHO05M002054 8.3e-104 380.6 334 64.4
Glyma.02G247300 Glycine max HOM05M002000 ORTHO05M002054 5.8e-89 331.3 338 57.7
Glyma.14G068900 Glycine max HOM05M002000 ORTHO05M002054 1.4e-87 326.6 341 56.9
CALSI_Maker00016514 Calamus simplicifolius HOM05M002000 ORTHO05M002054 1.5e-84 316.6 329 56.5
CALSI_Maker00029811 Calamus simplicifolius HOM05M002000 ORTHO05M002054 1.5e-84 316.6 329 56.5
Ma10_g29120 Musa acuminata HOM05M002000 ORTHO05M002054 2.4e-82 309.3 324 55.2
Aco004622 Ananas comosus HOM05M002000 ORTHO05M002054 6.8e-82 307.8 322 56.2
CALSI_Maker00005743 Calamus simplicifolius HOM05M002000 ORTHO05M002054 8.9e-82 307.4 329 55.9
ATR0691G263 Amborella trichopoda HOM05M002000 ORTHO05M002054 1.3e-80 303.5 326 54.9
DDU775G0265 Dioscorea dumetorum HOM05M002000 ORTHO05M002054 7.1e-79 297.7 335 54.3
p5.00_sc00052_p0016 Elaeis guineensis HOM05M002000 ORTHO05M002054 1.2e-78 297.0 331 55.6
Ma07_g24480 Musa acuminata HOM05M002000 ORTHO05M002054 4.6e-78 295.0 325 53.8
MBI14_g41638_MAGBIO Magnolia biondii HOM05M002000 ORTHO05M002054 1.1e-76 290.4 295 59.0
CDE10G0397 Ceratophyllum demersum HOM05M002000 ORTHO05M002054 3.6e-75 285.4 272 57.7
PH02Gene49964 Phyllostachys edulis HOM05M002000 ORTHO05M002054 1.8e-74 283.1 273 57.5
AT5G14790 Arabidopsis thaliana HOM05M002000 ORTHO05M002054 2.6e-73 279.3 297 55.6
Dexi9A01G0035390 Digitaria exilis HOM05M002000 ORTHO05M002054 4.4e-73 278.5 270 57.8
Dexi9B01G0034060 Digitaria exilis HOM05M002000 ORTHO05M002054 5.8e-73 278.1 270 57.8
GWHGAZTO049497 Oryza alta HOM05M002000 ORTHO05M002054 7.6e-73 277.7 277 55.6
Spipo10G0041700 Spirodela polyrhiza HOM05M002000 ORTHO05M002054 9.9e-73 277.3 323 51.7
OsKitaake02g136500 Oryza sativa Kitaake HOM05M002000 ORTHO05M002054 1.3e-72 276.9 274 55.8
OsR498G0816525300.01 Oryza sativa ssp. indica HOM05M002000 ORTHO05M002054 1.3e-72 276.9 274 55.8
Os02g0305700 Oryza sativa ssp. japonica HOM05M002000 ORTHO05M002054 1.3e-72 276.9 274 55.8
OsKitaake08g229271 Oryza sativa Kitaake HOM05M002000 ORTHO05M002054 1.7e-72 276.6 274 55.8
Os08g0534900 Oryza sativa ssp. japonica HOM05M002000 ORTHO05M002054 1.7e-72 276.6 274 55.8
OsR498G0203510100.01 Oryza sativa ssp. indica HOM05M002000 ORTHO05M002054 3.8e-72 275.4 274 55.5
Seita.6G225000 Setaria italica HOM05M002000 ORTHO05M002054 4.9e-72 275.0 270 55.9
GWHGAZTO096095 Oryza alta HOM05M002000 ORTHO05M002054 6.4e-72 274.6 277 54.9
OB08G28470 Oryza brachyantha HOM05M002000 ORTHO05M002054 6.4e-72 274.6 304 52.0
GWHGAORA012132 Cenchrus purpureus HOM05M002000 ORTHO05M002054 8.4e-72 274.2 273 56.0
PH02Gene08618 Phyllostachys edulis HOM05M002000 ORTHO05M002054 1.1e-71 273.9 276 56.9
EJB05_48060 Eragrostis curvula HOM05M002000 ORTHO05M002054 5.4e-71 271.6 326 51.5
EJB05_50522 Eragrostis curvula HOM05M002000 ORTHO05M002054 9.3e-71 270.8 326 51.5
Sevir.6G232200 Setaria viridis HOM05M002000 ORTHO05M002054 9.3e-71 270.8 270 55.9
Asa8G04031 Allium sativum HOM05M002000 ORTHO05M002054 1.2e-70 270.4 332 51.2
Sobic.009G222500 Sorghum bicolor HOM05M002000 ORTHO05M002054 2.1e-70 269.6 270 55.9
Zm00001eb175430 Zea mays B73 HOM05M002000 ORTHO05M002054 2.1e-70 269.6 270 56.3
Misin07G262100 Miscanthus sinensis HOM05M002000 ORTHO05M002054 3.5e-70 268.9 270 56.7
GWHGAORA037096 Cenchrus purpureus HOM05M002000 ORTHO05M002054 4.6e-70 268.5 270 55.2
Pahal.6G278800 Panicum hallii HOM05M002000 ORTHO05M002054 6.0e-70 268.1 268 56.0
Misin17G230300 Miscanthus sinensis HOM05M002000 ORTHO05M002054 7.9e-70 267.7 339 49.3
Sspon.07G0002750-1A Saccharum spontaneum HOM05M002000 ORTHO05M002054 1.0e-69 267.3 270 55.6
Misin13G159400 Miscanthus sinensis HOM05M002000 ORTHO05M002054 1.3e-69 266.9 268 57.1
Sobic.007G191800 Sorghum bicolor HOM05M002000 ORTHO05M002054 1.3e-69 266.9 269 56.9
Sspon.07G0002750-1P Saccharum spontaneum HOM05M002000 ORTHO05M002054 1.7e-69 266.5 270 55.6
HPP92_002960 Vanilla planifolia HOM05M002000 ORTHO05M002054 2.3e-69 266.2 329 47.1
Asa6G07141 Allium sativum HOM05M002000 ORTHO05M002054 3.0e-69 265.8 325 49.5
Zjn_sc00078.1.g01650.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002000 ORTHO05M002054 3.0e-69 265.8 270 55.2
MisinT451200 Miscanthus sinensis HOM05M002000 ORTHO05M002054 5.1e-69 265.0 272 55.1
TraesCS7A03G0604700 Triticum aestivum HOM05M002000 ORTHO05M002054 6.6e-69 264.6 264 56.1
TraesCS7B03G0434400 Triticum aestivum HOM05M002000 ORTHO05M002054 6.6e-69 264.6 267 55.4
TRIDC7AG033960 Triticum dicoccoides HOM05M002000 ORTHO05M002054 6.6e-69 264.6 264 56.1
TRIDC7BG025340 Triticum dicoccoides HOM05M002000 ORTHO05M002054 6.6e-69 264.6 267 55.4
TRITD7Av1G103940 Triticum turgidum HOM05M002000 ORTHO05M002054 6.6e-69 264.6 264 56.1
TRITD7Bv1G078320 Triticum turgidum HOM05M002000 ORTHO05M002054 6.6e-69 264.6 267 55.4
Horvu_MOREX_7H01G330900 Hordeum vulgare HOM05M002000 ORTHO05M002054 8.7e-69 264.2 264 56.1
OB11G19310 Oryza brachyantha HOM05M002000 ORTHO05M002054 8.7e-69 264.2 270 54.8
Sspon.06G0002730-1A Saccharum spontaneum HOM05M002000 ORTHO05M002054 1.1e-68 263.8 268 55.6
Sspon.06G0002730-2B Saccharum spontaneum HOM05M002000 ORTHO05M002054 1.5e-68 263.5 273 54.9
Sspon.07G0002750-2B Saccharum spontaneum HOM05M002000 ORTHO05M002054 1.5e-68 263.5 273 53.8
AT3G01450 Arabidopsis thaliana HOM05M002000 ORTHO05M002054 1.9e-68 263.1 323 50.2
Ot_Chr4_g23688 Oropetium thomaeum HOM05M002000 ORTHO05M002054 1.9e-68 263.1 272 54.8
Pahal.2G208800 Panicum hallii HOM05M002000 ORTHO05M002054 1.9e-68 263.1 264 55.3
Sspon.07G0002750-3C Saccharum spontaneum HOM05M002000 ORTHO05M002054 4.3e-68 261.9 270 54.8
AET7Gv20642700 Aegilops tauschii HOM05M002000 ORTHO05M002054 5.6e-68 261.5 267 55.4
TraesCS7D03G0594400 Triticum aestivum HOM05M002000 ORTHO05M002054 5.6e-68 261.5 267 55.4
Zm00001eb294930 Zea mays B73 HOM05M002000 ORTHO05M002054 7.3e-68 261.2 263 55.1
Zm00007a00043639 Zea mays B104 HOM05M002000 ORTHO05M002054 7.3e-68 261.2 263 55.1
Bradi3g41393 Brachypodium distachyon HOM05M002000 ORTHO05M002054 2.8e-67 259.2 268 54.9
GWHGASIY038981 Secale cereale HOM05M002000 ORTHO05M002054 2.8e-67 259.2 267 54.7
p5.00_sc01844_p0001 Elaeis guineensis HOM05M002000 ORTHO05M002054 4.8e-67 258.5 326 50.6
EJB05_07732 Eragrostis curvula HOM05M002000 ORTHO05M002054 4.8e-67 258.5 263 54.8
Zosma05g29910 Zostera marina HOM05M002000 ORTHO05M002054 4.5e-65 251.9 330 47.6
Zm00007a00008726 Zea mays B104 HOM05M002000 ORTHO05M002054 2.2e-64 249.6 270 54.1
Sspon.06G0002730-1T Saccharum spontaneum HOM05M002000 ORTHO05M002054 2.9e-64 249.2 273 53.1
SEGI_41419 Sequoiadendron giganteum HOM05M002000 ORTHO05M002054 3.8e-64 248.8 333 46.8
Sspon.06G0002730-3D Saccharum spontaneum HOM05M002000 ORTHO05M002054 8.4e-64 247.7 273 52.7
Zosma03g04340 Zostera marina HOM05M002000 ORTHO05M002054 4.2e-63 245.4 334 45.2
V3.Lp_chr7_0.1G4130 Lolium perenne HOM05M002000 ORTHO05M002054 1.4e-58 230.3 222 57.2
Asa4G01662 Allium sativum HOM05M002000 ORTHO05M002054 1.8e-58 229.9 196 62.2
Mapoly0123s0032 Marchantia polymorpha HOM05M002000 ORTHO05M002054 5.3e-58 228.4 304 44.7
CDE02G2316 Ceratophyllum demersum HOM05M002000 ORTHO05M002054 1.3e-56 223.8 194 59.3
Pp3c7_8540 Physcomitrium patens HOM05M002000 ORTHO05M002054 5.1e-53 211.8 266 45.5
Pp3c11_24870 Physcomitrium patens HOM05M002000 ORTHO05M002054 8.7e-53 211.1 266 45.9
AagrBONN_evm.TU.Sc2ySwM_362.1094 Anthoceros agrestis HOM05M002000 ORTHO05M002054 1.9e-52 209.9 259 43.6
SMO164G0052 Selaginella moellendorffii HOM05M000434 ORTHO05M000326 1.3e-51 207.2 205 50.7
SMO292G0012 Selaginella moellendorffii HOM05M000434 ORTHO05M000326 2.1e-51 206.5 202 51.0
evm.TU.AsparagusV1_05.3156.V1.1 Asparagus officinalis HOM05M002000 ORTHO05M002054 3.7e-51 205.7 240 54.2
Bradi3g41389 Brachypodium distachyon HOM05M002000 ORTHO05M002054 1.8e-42 176.8 180 54.4
Potri.008G221900 Populus trichocarpa HOM05M002000 ORTHO05M002054 2.4e-42 176.4 255 38.0
Potri.010G014200 Populus trichocarpa HOM05M002000 ORTHO05M002054 3.1e-42 176.0 256 39.1
PH02Gene29368 Phyllostachys edulis HOM05M002000 ORTHO05M002054 5.0e-40 168.7 243 46.5
Solyc01g080750.3 Solanum lycopersicum HOM05M002000 ORTHO05M002054 8.5e-40 167.9 291 35.4
AT3G18530 Arabidopsis thaliana HOM05M002000 ORTHO05M002054 1.4e-39 167.2 323 37.8
Ma08_g09940 Musa acuminata HOM05M002000 ORTHO05M002054 1.6e-38 163.7 256 37.1
Ma11_g05390 Musa acuminata HOM05M002000 ORTHO05M002054 1.8e-37 160.2 258 36.8
CBR_g38394 Chara braunii HOM05M002000 ORTHO05M002054 2.3e-37 159.8 273 35.2
DDU043G0027 Dioscorea dumetorum HOM05M002000 ORTHO05M002054 3.0e-37 159.5 254 37.4
Potri.008G221700 Populus trichocarpa HOM05M002000 ORTHO05M002054 3.0e-37 159.5 260 36.2
CALSI_Maker00028693 Calamus simplicifolius HOM05M002000 ORTHO05M002054 5.1e-37 158.7 268 35.8
CALSI_Maker00035141 Calamus simplicifolius HOM05M002000 ORTHO05M002054 5.1e-37 158.7 268 35.8
CALSI_Maker00040975 Calamus simplicifolius HOM05M002000 ORTHO05M002054 6.7e-37 158.3 255 37.6
DDU524G0196 Dioscorea dumetorum HOM05M002000 ORTHO05M002054 6.7e-37 158.3 254 37.0
Glyma.15G148300 Glycine max HOM05M002000 ORTHO05M002054 6.7e-37 158.3 265 37.0
AT4G15830 Arabidopsis thaliana HOM05M002000 ORTHO05M002054 1.1e-36 157.5 264 37.9
Glyma.09G044600 Glycine max HOM05M002000 ORTHO05M002054 1.1e-36 157.5 298 34.9
Aco002455 Ananas comosus HOM05M002000 ORTHO05M002054 7.4e-36 154.8 263 35.4
p5.00_sc00021_p0077 Elaeis guineensis HOM05M002000 ORTHO05M002054 7.4e-36 154.8 263 37.3
Asa1G03927 Allium sativum HOM05M002000 ORTHO05M002054 9.7e-36 154.5 266 36.1
evm.TU.AsparagusV1_05.936.V1.1 Asparagus officinalis HOM05M002000 ORTHO05M002054 3.7e-35 152.5 302 35.4
CDE10G0008 Ceratophyllum demersum HOM05M002000 ORTHO05M002054 2.4e-34 149.8 271 38.0
Sobic.003G414400 Sorghum bicolor HOM05M002000 ORTHO05M002054 5.3e-34 148.7 194 43.8
GWHGAORA046077 Cenchrus purpureus HOM05M000845 ORTHO05M004105 1.2e-33 147.5 196 42.9
Misin06G369400 Miscanthus sinensis HOM05M002000 ORTHO05M002054 1.2e-33 147.5 194 43.8
Misin05G401700 Miscanthus sinensis HOM05M002000 ORTHO05M002054 1.5e-33 147.1 194 44.8
Sspon.03G0027520-2C Saccharum spontaneum HOM05M002000 ORTHO05M002054 2.6e-33 146.4 193 43.5
Pahal.5G030500 Panicum hallii HOM05M002000 ORTHO05M002054 3.4e-33 146.0 265 35.8
GWHGAORA030324 Cenchrus purpureus HOM05M000845 ORTHO05M004105 5.9e-33 145.2 279 33.7
Sspon.03G0027520-1P Saccharum spontaneum HOM05M002000 ORTHO05M002054 5.9e-33 145.2 197 42.6
Zm00007a00016275 Zea mays B104 HOM05M002000 ORTHO05M002054 5.9e-33 145.2 264 37.9
Sspon.03G0027520-1B Saccharum spontaneum HOM05M002000 ORTHO05M002054 7.7e-33 144.8 194 43.8
PH02Gene14229 Phyllostachys edulis HOM05M002409 ORTHO05M007093 1.0e-32 144.4 278 33.1
ATR0796G173 Amborella trichopoda HOM05M002000 ORTHO05M002054 2.9e-32 142.9 265 34.0
PH02Gene12087 Phyllostachys edulis HOM05M002000 ORTHO05M002054 3.8e-32 142.5 296 32.8
Sevir.5G446800 Setaria viridis HOM05M002000 ORTHO05M002054 3.8e-32 142.5 285 34.4
Dexi5B01G0037580 Digitaria exilis HOM05M002000 ORTHO05M002054 5.0e-32 142.1 282 34.8
Zjn_sc00034.1.g02100.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002000 ORTHO05M002054 5.0e-32 142.1 269 35.3
TRIDC3AG063600 Triticum dicoccoides HOM05M002000 ORTHO05M002054 6.5e-32 141.7 264 34.8
Seita.5G440400 Setaria italica HOM05M002000 ORTHO05M002054 1.1e-31 141.0 285 34.0
Dexi5A01G0037720 Digitaria exilis HOM05M002000 ORTHO05M002054 1.9e-31 140.2 265 36.6
Zjn_sc00015.1.g06580.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002000 ORTHO05M002054 1.9e-31 140.2 268 36.9
TRIDC3BG071330 Triticum dicoccoides HOM05M002000 ORTHO05M002054 3.2e-31 139.4 341 31.4
OsKitaake01g459000 Oryza sativa Kitaake HOM05M002000 ORTHO05M002054 4.2e-31 139.0 275 33.5
Os01g0931200 Oryza sativa ssp. japonica HOM05M002000 ORTHO05M002054 4.2e-31 139.0 275 33.5
OsR498G0102639800.01 Oryza sativa ssp. indica HOM05M002000 ORTHO05M002054 5.5e-31 138.7 275 33.5
Bradi2g59700 Brachypodium distachyon HOM05M002000 ORTHO05M002054 1.2e-30 137.5 208 38.0
HPP92_011846 Vanilla planifolia HOM05M002000 ORTHO05M002054 2.7e-30 136.3 264 35.6
GWHGAZTO006775 Oryza alta HOM05M002000 ORTHO05M002054 7.9e-30 134.8 267 33.3
EJB05_16486 Eragrostis curvula HOM05M002000 ORTHO05M002054 1.0e-29 134.4 196 38.8
Horvu_MOREX_3H01G606000 Hordeum vulgare HOM05M002000 ORTHO05M002054 5.1e-29 132.1 285 32.3
Ot_Chr3_g09863 Oropetium thomaeum HOM05M002000 ORTHO05M002054 5.1e-29 132.1 279 31.9
TraesCS3D03G0969300 Triticum aestivum HOM05M002000 ORTHO05M002054 2.6e-28 129.8 211 38.4
V3.Lp_chr3_0G23140 Lolium perenne HOM05M002000 ORTHO05M002054 3.3e-28 129.4 218 35.3
Zm00001eb363590 Zea mays B73 HOM05M002000 ORTHO05M002054 3.3e-28 129.4 298 34.2
Spipo22G0013000 Spirodela polyrhiza HOM05M002000 ORTHO05M002054 5.7e-28 128.6 294 29.9
TraesCS3A03G1041900 Triticum aestivum HOM05M002000 ORTHO05M002054 1.3e-27 127.5 211 38.4
TRITD3Bv1G244870 Triticum turgidum HOM05M002000 ORTHO05M002054 1.3e-27 127.5 288 33.3
TRITD3Av1G252610 Triticum turgidum HOM05M002000 ORTHO05M002054 1.7e-27 127.1 211 37.9
GWHGASIY017336 Secale cereale HOM05M002000 ORTHO05M002054 2.2e-27 126.7 285 31.9
GWHGAZTO059106 Oryza alta HOM05M002000 ORTHO05M002054 2.4e-26 123.2 263 31.6
TraesCS3B03G1202600 Triticum aestivum HOM05M002000 ORTHO05M002054 3.1e-26 122.9 288 32.3
Zm00007a00009816 Zea mays B104 HOM05M002000 ORTHO05M002054 3.1e-26 122.9 116 55.2
OB01G51890 Oryza brachyantha HOM05M002000 ORTHO05M002054 5.3e-26 122.1 239 32.6
CALSI_Maker00024808 Calamus simplicifolius HOM05M002000 ORTHO05M002054 9.1e-26 121.3 142 45.1
CALSI_Maker00025685 Calamus simplicifolius HOM05M002000 ORTHO05M002054 3.5e-25 119.4 282 35.8
CDE02G4277 Ceratophyllum demersum HOM05M002000 ORTHO05M002054 2.2e-24 116.7 152 41.4
Asa2G02525 Allium sativum HOM05M002000 ORTHO05M002054 3.8e-24 115.9 86 72.1
SMO289G0002 Selaginella moellendorffii HOM05M002000 ORTHO05M002054 6.5e-24 115.2 134 44.0
MBI19_g12145_MAGBIO Magnolia biondii HOM05M002000 ORTHO05M002054 7.2e-23 111.7 195 38.5
Aco030458 Ananas comosus HOM05M002000 ORTHO05M002054 2.7e-22 109.8 189 34.9
AET4Gv20658100 Aegilops tauschii HOM05M002000 ORTHO05M002054 1.0e-21 107.8 114 52.6
Zm00007a00016951 Zea mays B104 HOM05M002000 ORTHO05M002054 1.0e-21 107.8 102 57.8
Zm00007a00023891 Zea mays B104 HOM05M000188 ORTHO05M000307 1.1e-20 104.4 102 57.8
Zm00007a00000825 Zea mays B104 HOM05M001613 ORTHO05M002054 3.5e-17 92.8 77 61.0
Zm00007a00031642 Zea mays B104 HOM05M001613 ORTHO05M002054 3.5e-17 92.8 77 61.0
CDE08G0982 Ceratophyllum demersum HOM05M001211 ORTHO05M002054 2.9e-16 89.7 95 46.3
Asa8G01942 Allium sativum HOM05M002000 ORTHO05M002054 3.6e-14 82.8 65 67.7
Asa0G04419 Allium sativum HOM05M002000 ORTHO05M002054 1.2e-12 77.8 55 74.5
CDE10G1329 Ceratophyllum demersum HOM05M002000 ORTHO05M002054 2.0e-12 77.0 140 37.9
Asa1G04831 Allium sativum HOM05M002000 ORTHO05M002054 5.7e-12 75.5 129 32.6
Asa3G01418 Allium sativum HOM05M002000 ORTHO05M002054 1.7e-11 73.9 86 52.3
MCO01G095 Micromonas commoda HOM05M002000 ORTHO05M002054 3.7e-11 72.8 151 33.8
PRCOL_00003119 Prasinoderma coloniale HOM05M002000 ORTHO05M002054 1.1e-10 71.2 197 29.4
Asa7G04562 Allium sativum HOM05M002000 ORTHO05M002054 1.3e-08 64.3 56 60.7
Asa2G03188 Allium sativum HOM05M002000 ORTHO05M002054 3.8e-08 62.8 42 73.8
Sspon.03G0027510-2C Saccharum spontaneum HOM05M002000 ORTHO05M002054 2.1e-06 57.0 103 33.0


User provided reference genes

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