Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g103680.3 Solanum lycopersicum HOM05M004623 ORTHO05M005682 1.6e-259 898.3 501 100.0
ATR0584G077 Amborella trichopoda HOM05M004623 ORTHO05M005682 3.7e-147 525.0 507 63.1
MBI09_g03430_MAGBIO Magnolia biondii HOM05M004623 ORTHO05M005682 2.5e-143 512.3 508 62.0
CDE08G0951 Ceratophyllum demersum HOM05M004623 ORTHO05M005682 3.3e-140 501.9 491 54.6
Spipo4G0116200 Spirodela polyrhiza HOM05M004623 ORTHO05M005682 9.7e-140 500.4 496 58.5
Ma08_g32700 Musa acuminata HOM05M004623 ORTHO05M005682 1.7e-139 499.6 493 56.6
Potri.004G223000 Populus trichocarpa HOM05M004623 ORTHO05M005682 3.5e-137 491.9 479 64.3
Glyma.12G167500 Glycine max HOM05M004623 ORTHO05M005682 8.5e-136 487.3 484 56.8
Aco028698 Ananas comosus HOM05M004623 ORTHO05M005682 1.1e-135 486.9 508 55.1
Ma08_g07930 Musa acuminata HOM05M004623 ORTHO05M005682 2.1e-134 482.6 490 55.3
AT4G24330 Arabidopsis thaliana HOM05M004623 ORTHO05M005682 4.7e-134 481.5 479 58.7
Zm00001eb289240 Zea mays B73 HOM05M004623 ORTHO05M005682 4.4e-132 474.9 494 54.9
SEGI_07809 Sequoiadendron giganteum HOM05M004623 ORTHO05M005682 7.5e-132 474.2 501 51.9
Seita.3G230900 Setaria italica HOM05M004623 ORTHO05M005682 1.3e-131 473.4 391 63.9
Sevir.3G236500 Setaria viridis HOM05M004623 ORTHO05M005682 1.3e-131 473.4 391 63.9
p5.00_sc00146_p0034 Elaeis guineensis HOM05M004623 ORTHO05M005682 2.8e-131 472.2 411 60.8
Sspon.07G0023470-1B Saccharum spontaneum HOM05M004623 ORTHO05M005682 1.8e-130 469.5 481 55.1
Sspon.07G0023470-3D Saccharum spontaneum HOM05M004623 ORTHO05M005682 1.8e-130 469.5 484 55.4
Sobic.009G149500 Sorghum bicolor HOM05M004623 ORTHO05M005682 1.8e-130 469.5 498 54.4
Pahal.3G269200 Panicum hallii HOM05M004623 ORTHO05M005682 2.4e-130 469.2 484 54.3
Bradi2g24290 Brachypodium distachyon HOM05M004623 ORTHO05M005682 7.0e-130 467.6 388 63.4
Misin16G160600 Miscanthus sinensis HOM05M004623 ORTHO05M005682 1.2e-129 466.8 494 54.7
Sspon.07G0023470-2C Saccharum spontaneum HOM05M004623 ORTHO05M005682 1.2e-129 466.8 481 54.9
Misin17G152500 Miscanthus sinensis HOM05M004623 ORTHO05M005682 4.5e-129 464.9 496 53.4
Zosma05g11470 Zostera marina HOM05M004623 ORTHO05M005682 1.0e-128 463.8 490 53.3
Zjn_sc00025.1.g02880.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004623 ORTHO05M005682 1.0e-128 463.8 387 62.8
GWHGAORA003093 Cenchrus purpureus HOM05M004623 ORTHO05M005682 1.7e-128 463.0 387 63.0
AT5G49945 Arabidopsis thaliana HOM05M004623 ORTHO05M005682 2.9e-128 462.2 478 57.5
Dexi3B01G0023610 Digitaria exilis HOM05M004623 ORTHO05M005682 3.8e-128 461.8 494 53.8
DDU739G0134 Dioscorea dumetorum HOM05M004623 ORTHO05M005682 3.8e-128 461.8 466 56.4
Zm00007a00012752 Zea mays B104 HOM05M004623 ORTHO05M005682 3.2e-127 458.8 482 54.4
CDE06G0202 Ceratophyllum demersum HOM05M004623 ORTHO05M005682 9.4e-127 457.2 438 55.5
PH02Gene41988 Phyllostachys edulis HOM05M004623 ORTHO05M005682 1.2e-126 456.8 383 65.5
PH02Gene50395 Phyllostachys edulis HOM05M004623 ORTHO05M005682 1.2e-126 456.8 383 65.5
Glyma.16G003600 Glycine max HOM05M004623 ORTHO05M005682 1.6e-126 456.4 485 54.0
Dexi3A01G0022920 Digitaria exilis HOM05M004623 ORTHO05M005682 3.6e-126 455.3 494 52.8
Zm00001eb348650 Zea mays B73 HOM05M004623 ORTHO05M005682 3.6e-126 455.3 488 53.7
Ot_Chr5_g05017 Oropetium thomaeum HOM05M004623 ORTHO05M005682 4.7e-126 454.9 389 68.9
CALSI_Maker00007629 Calamus simplicifolius HOM05M004623 ORTHO05M005682 6.1e-126 454.5 372 64.2
GWHGAORA038044 Cenchrus purpureus HOM05M004623 ORTHO05M005682 2.0e-124 449.5 391 65.7
TraesCS1A03G0685100 Triticum aestivum HOM05M004623 ORTHO05M005682 2.6e-124 449.1 387 61.8
TRIDC1AG040270 Triticum dicoccoides HOM05M004623 ORTHO05M005682 2.6e-124 449.1 387 61.8
TraesCS1D03G0649000 Triticum aestivum HOM05M004623 ORTHO05M005682 7.5e-124 447.6 390 61.0
TraesCS1B03G0779200 Triticum aestivum HOM05M004623 ORTHO05M005682 1.3e-123 446.8 388 62.1
TRITD1Bv1G154940 Triticum turgidum HOM05M004623 ORTHO05M005682 1.3e-123 446.8 388 62.1
GWHGASIY003546 Secale cereale HOM05M004623 ORTHO05M005682 2.2e-123 446.0 390 61.0
TRIDC1BG045750 Triticum dicoccoides HOM05M004623 ORTHO05M005682 3.7e-123 445.3 388 61.9
HPP92_013757 Vanilla planifolia HOM05M004623 ORTHO05M005682 8.3e-123 444.1 491 56.0
V3.Lp_chr4_0G16346 Lolium perenne HOM05M004623 ORTHO05M005682 1.1e-122 443.7 498 53.0
Horvu_MOREX_1H01G479200 Hordeum vulgare HOM05M004623 ORTHO05M005682 5.4e-122 441.4 390 60.5
GWHGAZTO083905 Oryza alta HOM05M004623 ORTHO05M005682 1.3e-120 436.8 385 61.6
OB05G25480 Oryza brachyantha HOM05M004623 ORTHO05M005682 2.9e-120 435.6 392 64.3
evm.TU.AsparagusV1_04.3332.V1.1 Asparagus officinalis HOM05M004623 ORTHO05M005682 3.8e-120 435.3 335 66.9
OsKitaake05g171700 Oryza sativa Kitaake HOM05M004623 ORTHO05M005682 5.0e-120 434.9 385 65.5
Os05g0432400 Oryza sativa ssp. japonica HOM05M004623 ORTHO05M005682 5.0e-120 434.9 385 65.5
GWHGAZTO034997 Oryza alta HOM05M004623 ORTHO05M005682 4.2e-119 431.8 379 61.7
Asa4G02580 Allium sativum HOM05M004623 ORTHO05M005682 1.0e-117 427.2 460 58.3
PH02Gene24147 Phyllostachys edulis HOM05M004623 ORTHO05M005682 1.0e-117 427.2 387 66.9
EJB05_35643 Eragrostis curvula HOM05M004623 ORTHO05M005682 1.8e-114 416.4 421 61.5
EJB05_35661 Eragrostis curvula HOM05M004623 ORTHO05M005682 1.8e-114 416.4 421 61.5
CALSI_Maker00006882 Calamus simplicifolius HOM05M004623 ORTHO05M005682 3.6e-110 402.1 487 53.0
DDU556G0444 Dioscorea dumetorum HOM05M004623 ORTHO05M005682 4.4e-108 395.2 420 52.6
TRITD1Av1G169280 Triticum turgidum HOM05M004623 ORTHO05M005682 2.0e-105 386.3 339 60.5
Asa1G02530 Allium sativum HOM05M004623 ORTHO05M005682 2.7e-105 386.0 477 53.0
Zosma04g14850 Zostera marina HOM05M004623 ORTHO05M005682 3.5e-105 385.6 456 48.5
Mapoly0037s0012 Marchantia polymorpha HOM05M004623 ORTHO05M005682 1.6e-102 376.7 505 44.6
SMO356G0110 Selaginella moellendorffii HOM05M004623 ORTHO05M005682 2.0e-100 369.8 380 53.9
Pp3c5_6620 Physcomitrium patens HOM05M004623 ORTHO05M005682 4.6e-89 332.0 384 45.6
Zjn_sc00012.1.g04990.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004623 ORTHO05M005682 2.3e-88 329.7 386 50.3
SEGI_11230 Sequoiadendron giganteum HOM05M004623 ORTHO05M005682 1.2e-84 317.4 358 49.7
AET1Gv20651900 Aegilops tauschii HOM05M004623 ORTHO05M005682 2.4e-77 293.1 248 62.1
Asa4G05288 Allium sativum HOM05M004623 ORTHO05M005682 1.3e-75 287.3 319 54.9
OsR498G0510902300.01 Oryza sativa ssp. indica HOM05M004623 ORTHO05M005682 1.2e-68 264.2 237 65.8
Asa0G04715 Allium sativum HOM05M004623 ORTHO05M005682 2.0e-68 263.5 251 55.4
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05M004623 ORTHO05M005682 7.6e-60 235.0 371 40.4
Asa6G06442 Allium sativum HOM05M004623 ORTHO05M005682 3.2e-58 229.6 204 58.3
Asa5G03707 Allium sativum HOM05M004623 ORTHO05M005682 5.1e-56 222.2 199 58.3
CBR_g4722 Chara braunii HOM05M004623 ORTHO05M005682 7.4e-55 218.4 360 36.9
SEGI_10393 Sequoiadendron giganteum HOM05M004623 ORTHO05M005682 8.2e-38 161.8 144 56.9
Cre02.g106300 Chlamydomonas reinhardtii HOM05M004623 ORTHO05M005682 1.2e-33 147.9 297 34.7
Zm00001eb254380 Zea mays B73 HOM05M002058 ORTHO05M004050 8.8e-24 115.2 166 42.2
Zm00001eb276420 Zea mays B73 HOM05M002058 ORTHO05M004050 8.8e-24 115.2 166 42.2
Zm00007a00033614 Zea mays B104 HOM05M003564 ORTHO05M004050 8.8e-24 115.2 166 42.2
Zm00007a00046333 Zea mays B104 HOM05M002058 ORTHO05M004050 8.8e-24 115.2 166 42.2
MCO13G620 Micromonas commoda HOM05M004623 ORTHO05M005682 3.3e-23 113.2 281 29.9
Zm00007a00016853 Zea mays B104 HOM05M002058 ORTHO05M004050 7.4e-23 112.1 166 40.4
Asa1G03887 Allium sativum HOM05M004623 ORTHO05M005682 5.9e-20 102.4 269 36.8
GWHGASIY010769 Secale cereale HOM05M004623 ORTHO05M005682 8.5e-19 98.6 72 69.4
Asa4G03165 Allium sativum HOM05M004623 ORTHO05M005682 7.2e-10 68.9 81 43.2


User provided reference genes

Program Settings