Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g099310.4 Solanum lycopersicum HOM05M005224 ORTHO05M006751 6.3e-188 659.8 329 100.0
Solyc04g072880.3 Solanum lycopersicum HOM05M005224 ORTHO05M006751 2.2e-169 598.2 329 90.0
p5.00_sc00237_p0001 Elaeis guineensis HOM05M005224 ORTHO05M006751 2.5e-112 408.7 329 61.1
Ma09_g19100 Musa acuminata HOM05M005224 ORTHO05M006751 1.3e-111 406.4 322 62.7
Glyma.06G164600 Glycine max HOM05M005224 ORTHO05M006751 2.9e-108 395.2 340 59.7
Spipo19G0021400 Spirodela polyrhiza HOM05M005224 ORTHO05M006751 2.1e-106 389.0 328 61.9
evm.TU.AsparagusV1_05.2103.V1.1 Asparagus officinalis HOM05M005224 ORTHO05M006751 1.1e-104 383.3 332 59.0
CALSI_Maker00017281 Calamus simplicifolius HOM05M005224 ORTHO05M006751 9.6e-104 380.2 331 58.0
Potri.005G027700 Populus trichocarpa HOM05M005224 ORTHO05M006751 9.6e-104 380.2 315 59.4
HPP92_024286 Vanilla planifolia HOM05M005224 ORTHO05M006751 2.0e-101 372.5 322 60.6
Asa7G00266 Allium sativum HOM05M005224 ORTHO05M006751 5.8e-101 370.9 328 57.6
HPP92_024312 Vanilla planifolia HOM05M005224 ORTHO05M006751 4.9e-100 367.9 323 60.4
PH02Gene27261 Phyllostachys edulis HOM05M005224 ORTHO05M006751 1.4e-99 366.3 331 57.7
Zosma06g07410 Zostera marina HOM05M005224 ORTHO05M006751 1.4e-99 366.3 326 57.4
AT5G27620 Arabidopsis thaliana HOM05M005224 ORTHO05M006751 2.5e-99 365.5 315 58.4
OB03G40510 Oryza brachyantha HOM05M005224 ORTHO05M006751 5.5e-99 364.4 330 57.9
GWHGAZTO026581 Oryza alta HOM05M005224 ORTHO05M006751 7.1e-99 364.0 330 58.2
OsKitaake03g330900 Oryza sativa Kitaake HOM05M005224 ORTHO05M006751 1.2e-98 363.2 330 57.9
OsR498G0307009500.01 Oryza sativa ssp. indica HOM05M005224 ORTHO05M006751 1.2e-98 363.2 330 57.9
Os03g0737600 Oryza sativa ssp. japonica HOM05M005224 ORTHO05M006751 1.2e-98 363.2 330 57.9
ATR0053G060 Amborella trichopoda HOM05M005224 ORTHO05M006751 1.0e-97 360.1 324 55.9
EJB05_04641 Eragrostis curvula HOM05M005224 ORTHO05M006751 3.9e-97 358.2 330 57.0
MBI16_g23767_MAGBIO Magnolia biondii HOM05M005224 ORTHO05M006751 1.1e-96 356.7 371 52.8
Sspon.01G0046710-1B Saccharum spontaneum HOM05M005224 ORTHO05M006751 2.8e-95 352.1 328 55.5
Misin01G077700 Miscanthus sinensis HOM05M005224 ORTHO05M006751 4.8e-95 351.3 330 56.1
Bradi1g09370 Brachypodium distachyon HOM05M005224 ORTHO05M006751 6.3e-95 350.9 322 55.9
Zm00001eb056480 Zea mays B73 HOM05M005224 ORTHO05M006751 8.2e-95 350.5 331 56.5
GWHGAORA051021 Cenchrus purpureus HOM05M005224 ORTHO05M006751 1.1e-94 350.1 321 55.8
Sobic.001G098100 Sorghum bicolor HOM05M005224 ORTHO05M006751 3.1e-94 348.6 330 55.8
Aco006781 Ananas comosus HOM05M005224 ORTHO05M006751 5.3e-94 347.8 286 60.1
GWHGAORA019555 Cenchrus purpureus HOM05M005224 ORTHO05M006751 9.0e-94 347.1 323 55.7
Misin02G077400 Miscanthus sinensis HOM05M005224 ORTHO05M006751 9.0e-94 347.1 329 55.6
Horvu_MOREX_4H01G071200 Hordeum vulgare HOM05M005224 ORTHO05M006751 3.4e-93 345.1 332 54.8
TraesCS4B03G0148600 Triticum aestivum HOM05M005224 ORTHO05M006751 5.9e-93 344.4 332 55.1
TRIDC4BG010450 Triticum dicoccoides HOM05M005224 ORTHO05M006751 5.9e-93 344.4 332 55.1
TRITD4Bv1G022740 Triticum turgidum HOM05M005224 ORTHO05M006751 5.9e-93 344.4 332 55.1
TraesCS4A03G0651200 Triticum aestivum HOM05M005224 ORTHO05M006751 1.0e-92 343.6 332 55.1
TraesCS4D03G0126000 Triticum aestivum HOM05M005224 ORTHO05M006751 1.0e-92 343.6 332 55.1
TRIDC4AG038850 Triticum dicoccoides HOM05M005224 ORTHO05M006751 1.0e-92 343.6 332 55.1
GWHGASIY018601 Secale cereale HOM05M005224 ORTHO05M006751 1.7e-92 342.8 332 55.1
GWHGASIY018610 Secale cereale HOM05M005224 ORTHO05M006751 1.7e-92 342.8 332 55.1
TRITD4Av1G182910 Triticum turgidum HOM05M005224 ORTHO05M006751 2.2e-92 342.4 333 55.0
AET4Gv20139500 Aegilops tauschii HOM05M005224 ORTHO05M006751 2.9e-92 342.0 332 54.8
GWHGASIY018727 Secale cereale HOM05M005224 ORTHO05M006751 3.8e-92 341.7 332 55.1
Pahal.9G096100 Panicum hallii HOM05M005224 ORTHO05M006751 6.5e-92 340.9 330 54.2
Seita.9G100500 Setaria italica HOM05M005224 ORTHO05M006751 8.5e-92 340.5 328 54.6
Ot_Chr4_g07493 Oropetium thomaeum HOM05M005224 ORTHO05M006751 5.5e-91 337.8 337 54.0
Sspon.01G0027800-2C Saccharum spontaneum HOM05M005224 ORTHO05M006751 1.5e-88 329.7 306 56.2
V3.Lp_chr4_0G6046 Lolium perenne HOM05M005224 ORTHO05M006751 2.5e-88 328.9 326 53.1
SMO367G1055 Selaginella moellendorffii HOM05M005224 ORTHO05M006751 4.1e-86 321.6 329 52.0
DDU009G0059 Dioscorea dumetorum HOM05M005224 ORTHO05M006751 9.1e-86 320.5 335 52.2
DDU256G0795 Dioscorea dumetorum HOM05M005224 ORTHO05M006751 9.1e-86 320.5 335 52.2
Sevir.9G098800 Setaria viridis HOM05M005224 ORTHO05M006751 4.5e-85 318.2 324 52.5
CDE10G0931 Ceratophyllum demersum HOM05M005224 ORTHO05M006751 1.5e-80 303.1 234 63.7
V3.Lp_chr4_0G28958 Lolium perenne HOM05M005224 ORTHO05M006751 3.7e-79 298.5 345 49.3
Mapoly0138s0006 Marchantia polymorpha HOM05M005224 ORTHO05M006751 3.1e-78 295.4 320 49.4
Pp3c5_10610 Physcomitrium patens HOM05M005224 ORTHO05M006751 9.1e-78 293.9 331 49.8
Glyma.17G201300 Glycine max HOM05M005224 ORTHO05M006751 1.6e-69 266.5 191 67.5
CBR_g29551 Chara braunii HOM05M005224 ORTHO05M006751 1.6e-66 256.5 355 42.8
Pp3c27_2950 Physcomitrium patens HOM05M005224 ORTHO05M006751 2.7e-66 255.8 253 51.8
AagrBONN_evm.TU.Sc2ySwM_344.774 Anthoceros agrestis HOM05M005224 ORTHO05M006751 2.8e-63 245.7 256 52.3
Mapoly0001s0195 Marchantia polymorpha HOM05M005224 ORTHO05M006751 7.2e-59 231.1 242 49.6
GWHGAZTO076473 Oryza alta HOM05M005224 ORTHO05M006751 8.8e-49 197.6 121 72.7
evm.TU.AsparagusV1_Unassigned.715.V1.1 Asparagus officinalis HOM05M005224 ORTHO05M006751 4.4e-40 168.7 153 54.9
SEGI_03068 Sequoiadendron giganteum HOM05M005224 ORTHO05M006751 4.0e-33 145.6 130 53.8
MCO06G045 Micromonas commoda HOM05M005224 ORTHO05M006751 2.0e-32 143.3 243 38.7
PRCOL_00002163 Prasinoderma coloniale HOM05M005224 ORTHO05M006751 1.0e-28 131.0 171 40.9
GWHGAZTO076474 Oryza alta HOM05M005224 ORTHO05M006751 4.6e-21 105.5 113 53.1
Zm00007a00039181 Zea mays B104 HOM05M005224 ORTHO05M006751 6.0e-21 105.1 129 46.5
Sspon.01G0027800-1A Saccharum spontaneum HOM05M005224 ORTHO05M006751 3.9e-20 102.4 113 46.9
Cre14.g632783 Chlamydomonas reinhardtii HOM05M005224 ORTHO05M006751 5.1e-20 102.1 278 25.5
CDE10G0345 Ceratophyllum demersum HOM05M005224 ORTHO05M006751 2.4e-17 93.2 212 32.5
Sspon.01G0046710-2D Saccharum spontaneum HOM05M005224 ORTHO05M006751 1.2e-16 90.9 95 47.4
CDE10G0550 Ceratophyllum demersum HOM05M005224 ORTHO05M006751 1.3e-12 77.4 95 46.3
Cre03.g174476 Chlamydomonas reinhardtii HOM05M004258 ORTHO05M005086 6.6e-12 75.1 182 31.9
HPP92_001407 Vanilla planifolia HOM05M004258 ORTHO05M005086 5.6e-11 72.0 223 26.9
SMO147G0024 Selaginella moellendorffii HOM05M004258 ORTHO05M005086 2.1e-10 70.1 149 30.9
PH02Gene30773 Phyllostachys edulis HOM05M004258 ORTHO05M005086 4.7e-10 68.9 236 26.3
AT5G48630 Arabidopsis thaliana HOM05M004258 ORTHO05M005086 8.1e-10 68.2 178 28.7
Mapoly0005s0080 Marchantia polymorpha HOM05M004258 ORTHO05M005086 1.4e-09 67.4 177 27.1
Pahal.2G322400 Panicum hallii HOM05M004258 ORTHO05M005086 1.4e-09 67.4 193 28.0
GWHGAORA007654 Cenchrus purpureus HOM05M004258 ORTHO05M005086 3.1e-09 66.2 236 25.8
EJB05_42243 Eragrostis curvula HOM05M004258 ORTHO05M005086 3.1e-09 66.2 236 25.8
Zm00007a00040688 Zea mays B104 HOM05M004258 ORTHO05M005086 3.1e-09 66.2 236 25.4
GWHGAORA048177 Cenchrus purpureus HOM05M004258 ORTHO05M005086 4.0e-09 65.9 236 25.8
Sspon.02G0010960-2B Saccharum spontaneum HOM05M004258 ORTHO05M005086 5.2e-09 65.5 236 25.4
Sobic.002G256200 Sorghum bicolor HOM05M004258 ORTHO05M005086 5.2e-09 65.5 236 25.4
AagrBONN_evm.TU.Sc2ySwM_344.4413 Anthoceros agrestis HOM05M004258 ORTHO05M005086 6.9e-09 65.1 183 27.3
AT5G48640 Arabidopsis thaliana HOM05M004258 ORTHO05M005086 6.9e-09 65.1 130 29.2
Dexi2A01G0022400 Digitaria exilis HOM05M004258 ORTHO05M005086 6.9e-09 65.1 189 28.0
Dexi2B01G0020920 Digitaria exilis HOM05M004258 ORTHO05M005086 6.9e-09 65.1 189 28.0
Potri.002G246800 Populus trichocarpa HOM05M004258 ORTHO05M005086 9.0e-09 64.7 182 26.9
Sevir.2G274500 Setaria viridis HOM05M004258 ORTHO05M005086 9.0e-09 64.7 152 30.3
Zm00001eb317580 Zea mays B73 HOM05M004258 ORTHO05M005086 9.0e-09 64.7 235 25.1
Aco004572 Ananas comosus HOM05M004258 ORTHO05M005086 1.2e-08 64.3 227 26.9
TRIDC6BG061270 Triticum dicoccoides HOM05M004258 ORTHO05M005086 1.2e-08 64.3 236 25.4
evm.TU.AsparagusV1_04.3498.V1.1 Asparagus officinalis HOM05M004258 ORTHO05M005086 1.5e-08 63.9 189 29.1
Bradi3g53770 Brachypodium distachyon HOM05M004258 ORTHO05M005086 1.5e-08 63.9 231 26.0
Spipo9G0068300 Spirodela polyrhiza HOM05M004258 ORTHO05M005086 1.5e-08 63.9 185 28.1
TraesCS6A03G0898900 Triticum aestivum HOM05M004258 ORTHO05M005086 1.5e-08 63.9 254 25.2
TRIDC6AG052500 Triticum dicoccoides HOM05M004258 ORTHO05M005086 1.5e-08 63.9 254 25.2
TRITD6Av1G207350 Triticum turgidum HOM05M004258 ORTHO05M005086 1.5e-08 63.9 254 25.2
Glyma.18G159000 Glycine max HOM05M004258 ORTHO05M005086 2.0e-08 63.5 249 25.3
Horvu_MOREX_6H01G528100 Hordeum vulgare HOM05M004258 ORTHO05M005086 2.0e-08 63.5 236 25.4
AET6Gv20863700 Aegilops tauschii HOM05M004258 ORTHO05M005086 2.6e-08 63.2 236 25.4
Bradi4g34440 Brachypodium distachyon HOM05M004258 ORTHO05M005086 2.6e-08 63.2 191 27.2
Glyma.08G347600 Glycine max HOM05M004258 ORTHO05M005086 2.6e-08 63.2 249 24.9
Misin03G217700 Miscanthus sinensis HOM05M004258 ORTHO05M005086 2.6e-08 63.2 189 27.5
Ot_Chr2_g24260 Oropetium thomaeum HOM05M004258 ORTHO05M005086 2.6e-08 63.2 189 27.5
GWHGASIY033736 Secale cereale HOM05M004258 ORTHO05M005086 2.6e-08 63.2 233 25.3
TraesCS6D03G0771600 Triticum aestivum HOM05M004258 ORTHO05M005086 2.6e-08 63.2 236 25.4
V3.Lp_chr5_0G16052 Lolium perenne HOM05M004258 ORTHO05M005086 3.4e-08 62.8 236 25.4
Seita.2G263900 Setaria italica HOM05M004258 ORTHO05M005086 3.4e-08 62.8 152 29.6
Os09g0504400 Oryza sativa ssp. japonica HOM05M004258 ORTHO05M005086 5.8e-08 62.0 143 30.8
Asa4G02383 Allium sativum HOM05M004258 ORTHO05M005086 7.6e-08 61.6 188 27.1
Pp3c24_1910 Physcomitrium patens HOM05M004258 ORTHO05M005086 9.9e-08 61.2 239 25.1
Solyc06g083260.3 Solanum lycopersicum HOM05M004258 ORTHO05M005086 9.9e-08 61.2 143 28.7
TraesCS6B03G1081700 Triticum aestivum HOM05M004258 ORTHO05M005086 9.9e-08 61.2 236 25.0
TRITD6Bv1G204090 Triticum turgidum HOM05M004258 ORTHO05M005086 9.9e-08 61.2 236 25.0
Horvu_MOREX_5H01G443400 Hordeum vulgare HOM05M004258 ORTHO05M005086 1.3e-07 60.8 150 29.3
OB09G22160 Oryza brachyantha HOM05M004258 ORTHO05M005086 1.3e-07 60.8 140 31.4
OsR498G0917764300.01 Oryza sativa ssp. indica HOM05M004258 ORTHO05M005086 1.3e-07 60.8 140 31.4
Potri.014G194900 Populus trichocarpa HOM05M004258 ORTHO05M005086 1.3e-07 60.8 182 25.8
GWHGASIY027006 Secale cereale HOM05M004258 ORTHO05M005086 1.3e-07 60.8 150 29.3
TRIDC5AG042360 Triticum dicoccoides HOM05M004258 ORTHO05M005086 1.3e-07 60.8 150 29.3
GWHGAZTO052181 Oryza alta HOM05M004258 ORTHO05M005086 2.2e-07 60.1 133 31.6
V3.Lp_chr6_0G18114 Lolium perenne HOM05M004258 ORTHO05M005086 2.9e-07 59.7 205 26.3
MBI07_g27657_MAGBIO Magnolia biondii HOM05M004258 ORTHO05M005086 2.9e-07 59.7 245 25.3
ATR0561G002 Amborella trichopoda HOM05M004258 ORTHO05M005086 3.8e-07 59.3 194 26.8
DDU469G0136 Dioscorea dumetorum HOM05M004258 ORTHO05M005086 4.9e-07 58.9 124 33.1
TraesCS5A03G0692600 Triticum aestivum HOM05M004258 ORTHO05M005086 4.9e-07 58.9 151 29.1
TraesCS5B03G0728300 Triticum aestivum HOM05M004258 ORTHO05M005086 4.9e-07 58.9 151 29.1
TraesCS5D03G0660000 Triticum aestivum HOM05M004258 ORTHO05M005086 4.9e-07 58.9 151 29.1
TRIDC5BG046200 Triticum dicoccoides HOM05M004258 ORTHO05M005086 4.9e-07 58.9 151 29.1
CALSI_Maker00037446 Calamus simplicifolius HOM05M004258 ORTHO05M005086 6.4e-07 58.5 212 25.5
Pp3c23_12870 Physcomitrium patens HOM05M004258 ORTHO05M005086 6.4e-07 58.5 239 25.1
GWHGAZTO098595 Oryza alta HOM05M004258 ORTHO05M005086 1.1e-06 57.8 140 30.0
Ma07_g02780 Musa acuminata HOM05M004258 ORTHO05M005086 1.4e-06 57.4 190 25.8
Zosma05g02120 Zostera marina HOM05M004258 ORTHO05M005086 1.4e-06 57.4 130 29.2
AT5G45190 Arabidopsis thaliana HOM05M000696 ORTHO05M000742 3.2e-06 56.2 161 28.0
Sspon.02G0010960-3D Saccharum spontaneum HOM05M004258 ORTHO05M005086 3.2e-06 56.2 198 26.3
Aco002833 Ananas comosus HOM05M000696 ORTHO05M000742 4.2e-06 55.8 162 28.4
TRITD5Av1G166270 Triticum turgidum HOM05M004258 ORTHO05M005086 5.4e-06 55.5 116 32.8
TRITD5Bv1G157670 Triticum turgidum HOM05M004258 ORTHO05M005086 5.4e-06 55.5 116 32.8
AT4G19600 Arabidopsis thaliana HOM05M000696 ORTHO05M000742 9.3e-06 54.7 183 26.8
Misin04G237900 Miscanthus sinensis HOM05M004258 ORTHO05M005086 9.3e-06 54.7 145 29.0
OB12G20260 Oryza brachyantha HOM05M000696 ORTHO05M000742 9.3e-06 54.7 151 27.8


User provided reference genes

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