Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g094540.4 Solanum lycopersicum HOM05M004895 ORTHO05M006483 1.6e-128 462.2 281 100.0
Solyc05g049950.3 Solanum lycopersicum HOM05M004895 ORTHO05M006483 2.5e-76 288.9 283 76.7
Zosma05g33000 Zostera marina HOM05M004895 ORTHO05M006483 6.1e-75 284.3 294 66.3
MBI05_g12101_MAGBIO Magnolia biondii HOM05M004895 ORTHO05M006483 7.5e-73 277.3 206 74.8
Ma04_g34970 Musa acuminata HOM05M004895 ORTHO05M006483 1.7e-69 266.2 276 64.1
Potri.001G440100 Populus trichocarpa HOM05M004895 ORTHO05M006483 1.7e-69 266.2 292 69.9
Glyma.14G025900 Glycine max HOM05M004895 ORTHO05M006483 1.9e-68 262.7 175 79.4
DDU444G0099 Dioscorea dumetorum HOM05M004895 ORTHO05M006483 5.6e-68 261.2 201 71.6
GWHGAZTO089864 Oryza alta HOM05M004895 ORTHO05M006483 1.2e-67 260.0 198 70.7
AT5G44500 Arabidopsis thaliana HOM05M004895 ORTHO05M006483 4.7e-67 258.1 249 69.5
Horvu_MOREX_2H01G349100 Hordeum vulgare HOM05M004895 ORTHO05M006483 8.0e-67 257.3 191 72.3
CDE10G0749 Ceratophyllum demersum HOM05M004895 ORTHO05M006483 1.4e-66 256.5 195 74.4
AT4G20440 Arabidopsis thaliana HOM05M004895 ORTHO05M006483 2.3e-66 255.8 230 71.3
AET2Gv20552800 Aegilops tauschii HOM05M004895 ORTHO05M006483 2.0e-65 252.7 242 65.7
TraesCS2D03G0569500 Triticum aestivum HOM05M004895 ORTHO05M006483 2.0e-65 252.7 242 65.7
Glyma.02G288900 Glycine max HOM05M004895 ORTHO05M006483 2.2e-64 249.2 153 84.3
GWHGAZTO042198 Oryza alta HOM05M004895 ORTHO05M006483 2.9e-64 248.8 198 68.2
OsKitaake07g045100 Oryza sativa Kitaake HOM05M004895 ORTHO05M006483 2.9e-64 248.8 198 68.2
OsR498G0713583100.01 Oryza sativa ssp. indica HOM05M004895 ORTHO05M006483 2.9e-64 248.8 198 68.2
TRIDC2BG038770 Triticum dicoccoides HOM05M004895 ORTHO05M006483 4.9e-64 248.1 191 70.2
TRITD2Bv1G123700 Triticum turgidum HOM05M004895 ORTHO05M006483 4.9e-64 248.1 191 70.2
HPP92_018640 Vanilla planifolia HOM05M004895 ORTHO05M006483 1.4e-63 246.5 269 66.9
Aco005163 Ananas comosus HOM05M004895 ORTHO05M006483 4.1e-63 245.0 164 77.4
Potri.011G155700 Populus trichocarpa HOM05M004895 ORTHO05M006483 5.4e-63 244.6 300 62.0
Zm00001eb117150 Zea mays B73 HOM05M004895 ORTHO05M006483 2.0e-62 242.7 195 69.2
Zm00007a00036318 Zea mays B104 HOM05M004895 ORTHO05M006483 2.0e-62 242.7 195 69.2
GWHGASIY008159 Secale cereale HOM05M004895 ORTHO05M006483 7.8e-62 240.7 191 68.6
Mapoly0023s0062 Marchantia polymorpha HOM05M004895 ORTHO05M006483 2.3e-61 239.2 175 74.3
CDE10G0801 Ceratophyllum demersum HOM05M004895 ORTHO05M006483 3.9e-61 238.4 202 68.8
p5.00_sc01931_p0001 Elaeis guineensis HOM05M004895 ORTHO05M006483 6.6e-61 237.7 151 80.1
Bradi1g56546 Brachypodium distachyon HOM05M004895 ORTHO05M006483 2.5e-60 235.7 195 67.7
CALSI_Maker00040100 Calamus simplicifolius HOM05M004895 ORTHO05M006483 3.1e-58 228.8 185 68.6
TraesCS2A03G0586800 Triticum aestivum HOM05M004895 ORTHO05M006483 4.0e-58 228.4 191 66.5
TRIDC2AG034250 Triticum dicoccoides HOM05M004895 ORTHO05M006483 4.0e-58 228.4 191 66.5
TRITD2Av1G130150 Triticum turgidum HOM05M004895 ORTHO05M006483 4.0e-58 228.4 191 66.5
Zjn_sc00030.1.g03340.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M004895 ORTHO05M006483 4.0e-58 228.4 208 63.5
ATR0697G198 Amborella trichopoda HOM05M004895 ORTHO05M006483 8.9e-58 227.3 238 62.6
Asa3G00284 Allium sativum HOM05M004895 ORTHO05M006483 9.8e-57 223.8 251 59.0
GWHGAORA010172 Cenchrus purpureus HOM05M004895 ORTHO05M006483 4.9e-56 221.5 237 65.0
Pahal.2G036500 Panicum hallii HOM05M004895 ORTHO05M006483 2.1e-54 216.1 238 57.1
Spipo14G0003500 Spirodela polyrhiza HOM05M004895 ORTHO05M006483 2.7e-54 215.7 167 70.7
Dexi2A01G0003850 Digitaria exilis HOM05M004895 ORTHO05M006483 3.5e-54 215.3 238 56.7
Dexi2B01G0003710 Digitaria exilis HOM05M004895 ORTHO05M006483 3.5e-54 215.3 238 56.7
CBR_g48393 Chara braunii HOM05M004895 ORTHO05M006483 1.0e-53 213.8 235 58.7
Ot_Chr7_g09529 Oropetium thomaeum HOM05M004895 ORTHO05M006483 3.0e-53 212.2 183 66.1
Misin03G007900 Miscanthus sinensis HOM05M004895 ORTHO05M006483 1.5e-52 209.9 195 62.1
Seita.2G044300 Setaria italica HOM05M004895 ORTHO05M006483 1.5e-52 209.9 193 62.7
Sevir.2G048600 Setaria viridis HOM05M004895 ORTHO05M006483 1.5e-52 209.9 193 62.7
Sobic.002G045100 Sorghum bicolor HOM05M004895 ORTHO05M006483 1.9e-52 209.5 189 64.0
Sspon.02G0042140-1B Saccharum spontaneum HOM05M004895 ORTHO05M006483 2.5e-52 209.1 193 62.2
Sspon.02G0042140-3D Saccharum spontaneum HOM05M004895 ORTHO05M006483 2.5e-52 209.1 193 62.2
Asa3G02742 Allium sativum HOM05M004895 ORTHO05M006483 3.3e-52 208.8 245 58.4
Sspon.02G0042140-2C Saccharum spontaneum HOM05M004895 ORTHO05M006483 1.6e-51 206.5 193 61.7
Misin04G001100 Miscanthus sinensis HOM05M004895 ORTHO05M006483 4.7e-51 204.9 195 61.5
Zjn_sc00051.1.g01650.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004895 ORTHO05M006483 3.1e-50 202.2 207 58.5
CALSI_Maker00040086 Calamus simplicifolius HOM05M004895 ORTHO05M006483 3.4e-49 198.7 143 74.1
Zm00001eb300870 Zea mays B73 HOM05M004895 ORTHO05M006483 9.9e-49 197.2 195 60.0
Zm00007a00007836 Zea mays B104 HOM05M004895 ORTHO05M006483 9.9e-49 197.2 195 60.0
PH02Gene08713 Phyllostachys edulis HOM05M004895 ORTHO05M006483 1.1e-47 193.7 153 67.3
Cre14.g611150 Chlamydomonas reinhardtii HOM05M004895 ORTHO05M006483 7.1e-47 191.0 160 63.1
EJB05_15057 Eragrostis curvula HOM05M004895 ORTHO05M006483 1.6e-46 189.9 142 70.4
SEGI_35791 Sequoiadendron giganteum HOM05M004895 ORTHO05M006483 3.5e-46 188.7 252 55.2
PH02Gene26116 Phyllostachys edulis HOM05M004895 ORTHO05M006483 6.0e-46 188.0 153 66.0
CALSI_Maker00040088 Calamus simplicifolius HOM05M004895 ORTHO05M006483 3.0e-45 185.7 201 58.7
MCO12G128 Micromonas commoda HOM05M004895 ORTHO05M006483 7.3e-44 181.0 152 62.5
p5.00_sc27566_p0001 Elaeis guineensis HOM05M004895 ORTHO05M006483 2.1e-38 162.9 88 90.9
GWHGASIY008157 Secale cereale HOM05M004895 ORTHO05M006483 3.5e-38 162.2 94 84.0
SMO367G1222 Selaginella moellendorffii HOM05M004895 ORTHO05M006483 2.1e-35 152.9 94 80.9
Pp3c10_22940 Physcomitrium patens HOM05M004895 ORTHO05M006483 3.4e-33 145.6 190 51.1
GWHGAORA046775 Cenchrus purpureus HOM05M004895 ORTHO05M006483 2.9e-32 142.5 142 58.5
Pp3c3_24850 Physcomitrium patens HOM05M004895 ORTHO05M006483 2.9e-32 142.5 192 50.0
Pp3c3_24900 Physcomitrium patens HOM05M004895 ORTHO05M006483 2.9e-32 142.5 192 50.0
Pp3c3_24910 Physcomitrium patens HOM05M004895 ORTHO05M006483 1.3e-29 133.7 277 43.3
PRCOL_00001809 Prasinoderma coloniale HOM05M004895 ORTHO05M006483 8.7e-29 131.0 137 54.0
CALSI_Maker00048307 Calamus simplicifolius HOM05M004895 ORTHO05M081720 1.8e-26 123.2 118 61.0
Aco027599 Ananas comosus HOM05M004895 ORTHO05M006483 1.5e-20 103.6 67 77.6
Asa8G00670 Allium sativum HOM05M004895 ORTHO05M006483 9.6e-20 100.9 130 53.1
Aco028556 Ananas comosus HOM05M004895 ORTHO05M006483 1.6e-19 100.1 59 81.4
Aco016152 Ananas comosus HOM05M004895 ORTHO05M006483 4.8e-19 98.6 67 73.1
SEGI_08107 Sequoiadendron giganteum HOM05M004895 ORTHO05M006483 1.0e-13 80.9 52 71.2
CALSI_Maker00040078 Calamus simplicifolius HOM05M004895 ORTHO05M080071 5.9e-09 65.1 134 44.0


User provided reference genes

Program Settings