Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g094530.4 Solanum lycopersicum HOM05M003690 ORTHO05M004458 2.5e-253 877.5 429 100.0
Solyc01g094550.3 Solanum lycopersicum HOM05M003690 ORTHO05M004458 3.0e-222 774.2 429 87.6
Glyma.18G232000 Glycine max HOM05M003690 ORTHO05M004458 3.1e-179 631.3 416 72.1
Potri.014G083300 Populus trichocarpa HOM05M003690 ORTHO05M004458 5.3e-179 630.6 416 73.1
AT1G01710 Arabidopsis thaliana HOM05M003690 ORTHO05M004458 3.8e-177 624.4 419 70.6
Glyma.09G260200 Glycine max HOM05M003690 ORTHO05M004458 6.5e-177 623.6 409 72.4
Glyma.03G009800 Glycine max HOM05M003690 ORTHO05M004458 8.0e-175 616.7 416 70.7
Glyma.07G071300 Glycine max HOM05M003690 ORTHO05M004458 5.2e-174 614.0 416 70.0
CDE11G0862 Ceratophyllum demersum HOM05M003690 ORTHO05M004458 5.5e-160 567.4 420 63.6
ATR0680G356 Amborella trichopoda HOM05M003690 ORTHO05M004458 1.0e-158 563.1 420 62.4
Ot_Chr6_g12338 Oropetium thomaeum HOM05M003690 ORTHO05M004458 4.4e-157 557.8 431 61.9
Seita.7G195600 Setaria italica HOM05M003690 ORTHO05M004458 5.4e-155 550.8 430 62.1
Sevir.7G207700 Setaria viridis HOM05M003690 ORTHO05M004458 5.4e-155 550.8 430 62.1
GWHGAZTO030854 Oryza alta HOM05M003690 ORTHO05M004458 7.0e-155 550.4 433 61.9
Sobic.006G175800 Sorghum bicolor HOM05M003690 ORTHO05M004458 7.0e-155 550.4 430 61.9
Pahal.7G250100 Panicum hallii HOM05M003690 ORTHO05M004458 9.2e-155 550.1 430 62.6
GWHGAORA021893 Cenchrus purpureus HOM05M003690 ORTHO05M004458 1.2e-154 549.7 430 62.6
Misin12G173200 Miscanthus sinensis HOM05M003690 ORTHO05M004458 1.2e-154 549.7 430 62.3
OsKitaake04g222500 Oryza sativa Kitaake HOM05M003690 ORTHO05M004458 1.6e-154 549.3 429 62.2
Os04g0558400 Oryza sativa ssp. japonica HOM05M003690 ORTHO05M004458 1.6e-154 549.3 429 62.2
Misin11G169300 Miscanthus sinensis HOM05M003690 ORTHO05M004458 2.7e-154 548.5 430 61.9
PH02Gene33249 Phyllostachys edulis HOM05M003690 ORTHO05M004458 3.8e-153 544.7 419 61.6
Ma09_g20230 Musa acuminata HOM05M003690 ORTHO05M004458 5.0e-153 544.3 421 62.0
OB04G28410 Oryza brachyantha HOM05M003690 ORTHO05M004458 6.6e-153 543.9 415 62.7
PH02Gene20796 Phyllostachys edulis HOM05M003690 ORTHO05M004458 1.2e-151 539.7 415 61.4
evm.TU.AsparagusV1_Unassigned.662.V1.1 Asparagus officinalis HOM05M003690 ORTHO05M004458 1.8e-150 535.8 432 61.8
Bradi5g18080 Brachypodium distachyon HOM05M003690 ORTHO05M004458 5.2e-150 534.3 419 60.6
TraesCS2A03G0982400 Triticum aestivum HOM05M003690 ORTHO05M004458 8.9e-150 533.5 419 60.4
EJB05_38418 Eragrostis curvula HOM05M003690 ORTHO05M004458 2.0e-149 532.3 446 59.2
TraesCS2B03G1089600 Triticum aestivum HOM05M003690 ORTHO05M004458 2.0e-149 532.3 419 60.1
Misin12G173300 Miscanthus sinensis HOM05M003690 ORTHO05M004458 3.4e-149 531.6 429 60.6
GWHGASIY010332 Secale cereale HOM05M003690 ORTHO05M004458 3.4e-149 531.6 419 60.1
Horvu_MOREX_2H01G590900 Hordeum vulgare HOM05M003690 ORTHO05M004458 7.5e-149 530.4 419 60.1
TRIDC2BG062190 Triticum dicoccoides HOM05M003690 ORTHO05M004458 3.7e-148 528.1 415 60.2
AET2Gv20906000 Aegilops tauschii HOM05M003690 ORTHO05M004458 6.4e-148 527.3 415 60.0
TRITD2Bv1G202360 Triticum turgidum HOM05M003690 ORTHO05M004458 8.3e-148 526.9 415 60.0
TRIDC2AG059080 Triticum dicoccoides HOM05M003690 ORTHO05M004458 1.1e-147 526.6 415 60.0
GWHGAORA062556 Cenchrus purpureus HOM05M003690 ORTHO05M004458 3.2e-147 525.0 430 60.7
V3.Lp_chr2_0G19070 Lolium perenne HOM05M003690 ORTHO05M004458 4.1e-147 524.6 415 60.2
Misin11G169200 Miscanthus sinensis HOM05M003690 ORTHO05M004458 4.1e-147 524.6 429 59.9
Sobic.006G175900 Sorghum bicolor HOM05M003690 ORTHO05M004458 9.2e-147 523.5 432 60.2
Aco012026 Ananas comosus HOM05M003690 ORTHO05M004458 2.2e-140 502.3 430 59.1
HPP92_008506 Vanilla planifolia HOM05M003690 ORTHO05M004458 1.6e-138 496.1 429 58.0
Sspon.05G0005510-2B Saccharum spontaneum HOM05M003690 ORTHO05M004458 7.8e-138 493.8 410 59.5
Zosma03g26850 Zostera marina HOM05M003690 ORTHO05M004458 2.3e-137 492.3 422 58.3
AT4G00520 Arabidopsis thaliana HOM05M003690 ORTHO05M004458 1.5e-136 489.6 395 61.0
Sspon.05G0005510-3D Saccharum spontaneum HOM05M003690 ORTHO05M004458 2.1e-135 485.7 453 55.2
Asa7G06849 Allium sativum HOM05M003690 ORTHO05M004458 2.8e-135 485.3 408 59.1
Ma08_g11220 Musa acuminata HOM05M003690 ORTHO05M004458 9.2e-131 470.3 395 59.7
GWHGAZTO080529 Oryza alta HOM05M003690 ORTHO05M004458 2.7e-122 442.2 335 63.3
TraesCS2D03G0919600 Triticum aestivum HOM05M003690 ORTHO05M004458 8.7e-121 437.2 353 59.5
Pp3c14_7450 Physcomitrium patens HOM05M003690 ORTHO05M004458 2.8e-103 379.0 420 47.6
SMO147G0381 Selaginella moellendorffii HOM05M003690 ORTHO05M004458 2.9e-100 369.0 430 45.3
OsR498G0409062500.01 Oryza sativa ssp. indica HOM05M003690 ORTHO05M004458 2.5e-96 355.9 263 65.8
Glyma.18G232200 Glycine max HOM05M003690 ORTHO05M004458 5.5e-91 338.2 227 70.9
Zm00001eb429310 Zea mays B73 HOM05M003690 ORTHO05M004458 4.5e-85 318.5 277 58.1
TRITD2Av1G241220 Triticum turgidum HOM05M003690 ORTHO05M004458 2.9e-84 315.8 452 39.6
AagrBONN_evm.TU.Sc2ySwM_228.998 Anthoceros agrestis HOM05M003690 ORTHO05M004458 5.0e-84 315.1 382 44.2
Pp3c12_25760 Physcomitrium patens HOM05M003690 ORTHO05M004458 7.2e-83 311.2 421 39.4
Mapoly0016s0008 Marchantia polymorpha HOM05M003690 ORTHO05M004458 2.1e-82 309.7 430 40.5
Asa2G05939 Allium sativum HOM05M003690 ORTHO05M004458 8.8e-81 304.3 315 52.1
DDU258G0064 Dioscorea dumetorum HOM05M003690 ORTHO05M004458 1.1e-80 303.9 456 42.8
Zm00007a00030218 Zea mays B104 HOM05M003690 ORTHO05M004458 1.9e-80 303.1 257 59.5
GWHGAORA062617 Cenchrus purpureus HOM05M003690 ORTHO05M004458 2.5e-80 302.8 363 45.2
CALSI_Maker00028291 Calamus simplicifolius HOM05M003690 ORTHO05M004458 1.0e-76 290.8 211 67.3
DDU002G0654 Dioscorea dumetorum HOM05M003690 ORTHO05M004458 1.1e-75 287.3 491 39.3
Pp3c10_19190 Physcomitrium patens HOM05M003690 ORTHO05M004458 7.2e-75 284.6 424 36.8
SEGI_22600 Sequoiadendron giganteum HOM05M003690 ORTHO05M004458 8.8e-73 277.7 217 60.4
Asa0G02826 Allium sativum HOM05M003690 ORTHO05M004458 5.0e-68 261.9 233 56.2
GWHGAORA021861 Cenchrus purpureus HOM05M003690 ORTHO05M004458 9.4e-67 257.7 257 52.9
evm.TU.AsparagusV1_10.1527.V1.1 Asparagus officinalis HOM05M003690 ORTHO05M004458 1.8e-62 243.4 198 63.1
Asa4G02902 Allium sativum HOM05M003690 ORTHO05M004458 2.4e-62 243.0 237 54.4
SMO147G0196 Selaginella moellendorffii HOM05M003690 ORTHO05M004458 1.6e-61 240.4 245 48.6
AagrBONN_evm.TU.Sc2ySwM_228.1010 Anthoceros agrestis HOM05M003690 ORTHO05M004458 3.5e-61 239.2 289 43.9
Dexi7B01G0015970 Digitaria exilis HOM05M003690 ORTHO05M004458 1.0e-60 237.7 444 34.5
Dexi7A01G0015210 Digitaria exilis HOM05M003690 ORTHO05M004458 5.0e-60 235.3 444 34.2
Asa7G06848 Allium sativum HOM05M003690 ORTHO05M004458 1.9e-59 233.4 339 42.8
p5.00_sc00522_p0001 Elaeis guineensis HOM05M003690 ORTHO05M004458 6.3e-55 218.4 145 69.0
Asa4G02900 Allium sativum HOM05M003690 ORTHO05M004458 1.2e-50 204.1 146 63.7
DDU914G0157 Dioscorea dumetorum HOM05M003690 ORTHO05M004458 1.6e-50 203.8 224 46.4
Spipo11G0053600 Spirodela polyrhiza HOM05M003690 ORTHO05M004458 1.6e-50 203.8 140 67.9
DDU148G0007 Dioscorea dumetorum HOM05M003690 ORTHO05M004458 1.0e-49 201.1 224 46.0
Zjn_sc00004.1.g07030.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003690 ORTHO05M004458 9.8e-48 194.5 428 32.9
evm.TU.AsparagusV1_10.1528.V1.1 Asparagus officinalis HOM05M003690 ORTHO05M004458 1.8e-46 190.3 143 62.2
Zjn_sc00056.1.g04660.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003690 ORTHO05M004458 6.8e-41 171.8 426 29.6
Sspon.05G0005510-1A Saccharum spontaneum HOM05M003690 ORTHO05M004458 3.4e-40 169.5 232 44.0
PRCOL_00006030 Prasinoderma coloniale HOM05M003690 ORTHO05M004458 6.6e-36 155.2 301 33.6
SMO273G0019 Selaginella moellendorffii HOM05M003690 ORTHO05M004458 1.9e-35 153.7 239 38.1
SMO147G0373 Selaginella moellendorffii HOM05M003690 ORTHO05M004458 1.7e-31 140.6 208 38.9
CALSI_Maker00028310 Calamus simplicifolius HOM05M003690 ORTHO05M004458 1.7e-28 130.6 114 58.8
Dexi3B01G0025770 Digitaria exilis HOM05M003690 ORTHO05M004458 1.5e-27 127.5 175 42.3
CALSI_Maker00028298 Calamus simplicifolius HOM05M003690 ORTHO05M004458 2.8e-26 123.2 102 53.9
Glyma.18G232300 Glycine max HOM05M003690 ORTHO05M004458 8.9e-25 118.2 87 63.2
Asa6G07166 Allium sativum HOM05M003690 ORTHO05M004458 3.2e-22 109.8 87 57.5
SEGI_17243 Sequoiadendron giganteum HOM05M003690 ORTHO05M004458 2.7e-21 106.7 84 58.3
Dexi3A01G0025140 Digitaria exilis HOM05M003690 ORTHO05M004458 3.5e-21 106.3 171 36.3
Glyma.18G232100 Glycine max HOM05M003690 ORTHO05M004458 1.6e-18 97.4 61 70.5
p5.00_sc00522_p0002 Elaeis guineensis HOM05M003690 ORTHO05M004458 3.4e-16 89.7 59 66.1
Potri.002G159150 Populus trichocarpa HOM05M003690 ORTHO05M004458 1.6e-10 70.9 93 41.9
TRIDC6BG014080 Triticum dicoccoides HOM05M003690 ORTHO05M004458 8.9e-09 65.1 68 52.9
Cre16.g663200 Chlamydomonas reinhardtii HOM05M000076 ORTHO05M019410 8.4e-07 58.5 138 31.2
CBR_g9064 Chara braunii HOM05M010127 ORTHO05M019410 2.4e-06 57.0 153 31.4
Asa6G05628 Allium sativum HOM05M003690 ORTHO05M004458 3.2e-06 56.6 42 61.9
CBR_g48193 Chara braunii HOM05M010127 ORTHO05M013039 5.4e-06 55.8 98 35.7
Spipo11G0053500 Spirodela polyrhiza HOM05M003690 ORTHO05M004458 5.4e-06 55.8 39 64.1
PRCOL_00001011 Prasinoderma coloniale HOM05M010127 ORTHO05M013039 9.2e-06 55.1 102 30.4
PRCOL_00003761 Prasinoderma coloniale HOM05M000076 ORTHO05M019410 9.2e-06 55.1 113 31.9


User provided reference genes

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