Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g090070.2 Solanum lycopersicum HOM05M002907 ORTHO05M003500 1.7e-137 491.9 250 100.0
Solyc01g090110.2 Solanum lycopersicum HOM05M002907 ORTHO05M003500 2.4e-54 215.7 238 51.3
Solyc01g057510.2 Solanum lycopersicum HOM05M002907 ORTHO05M003500 5.7e-48 194.5 228 48.7
Solyc01g090080.3 Solanum lycopersicum HOM05M002907 ORTHO05M003500 2.6e-45 185.7 246 45.9
Solyc01g090010.2 Solanum lycopersicum HOM05M002907 ORTHO05M003500 1.0e-41 173.7 228 46.5
Solyc03g113825.1 Solanum lycopersicum HOM05M002907 ORTHO05M003500 1.2e-37 160.2 230 44.3
Solyc01g090030.2 Solanum lycopersicum HOM05M002907 ORTHO05M003500 5.9e-37 157.9 231 43.3
Solyc01g089920.3 Solanum lycopersicum HOM05M002907 ORTHO05M002833 3.8e-36 155.2 231 42.4
Solyc01g089940.1 Solanum lycopersicum HOM05M002907 ORTHO05M003500 5.4e-30 134.8 171 47.4
Solyc01g090100.3 Solanum lycopersicum HOM05M002907 ORTHO05M003500 7.7e-29 131.0 238 38.2
Solyc01g090000.1 Solanum lycopersicum HOM05M002907 ORTHO05M003500 2.2e-28 129.4 228 35.1
Solyc01g090090.3 Solanum lycopersicum HOM05M002907 ORTHO05M003500 3.6e-26 122.1 238 34.9
Sspon.04G0019520-3D Saccharum spontaneum HOM05M002907 ORTHO05M003500 2.4e-22 109.4 222 33.3
CALSI_Maker00005916 Calamus simplicifolius HOM05M002907 ORTHO05M003500 5.4e-22 108.2 221 31.2
Sspon.04G0019520-2B Saccharum spontaneum HOM05M002907 ORTHO05M003500 7.0e-22 107.8 222 33.3
Misin07G023500 Miscanthus sinensis HOM05M002907 ORTHO05M003500 1.2e-21 107.1 222 33.3
Sobic.004G024200 Sorghum bicolor HOM05M002907 ORTHO05M003500 1.2e-21 107.1 222 32.9
Zm00001eb230820 Zea mays B73 HOM05M002907 ORTHO05M003500 1.6e-21 106.7 202 36.1
Sspon.04G0019520-1A Saccharum spontaneum HOM05M002907 ORTHO05M003500 2.7e-21 105.9 222 32.9
Zm00001eb208690 Zea mays B73 HOM05M002907 ORTHO05M003500 2.7e-21 105.9 217 32.7
Zm00007a00031559 Zea mays B104 HOM05M002907 ORTHO05M003500 2.7e-21 105.9 217 32.3
Pahal.1G021000 Panicum hallii HOM05M002907 ORTHO05M003500 3.5e-21 105.5 221 32.6
AT5G47120 Arabidopsis thaliana HOM05M002907 ORTHO05M003500 7.7e-21 104.4 220 29.5
Misin08G022400 Miscanthus sinensis HOM05M002907 ORTHO05M003500 1.0e-20 104.0 222 32.4
Seita.1G103700 Setaria italica HOM05M002907 ORTHO05M003500 1.0e-20 104.0 217 33.2
Sevir.1G103100 Setaria viridis HOM05M002907 ORTHO05M003500 1.0e-20 104.0 217 33.2
Zm00007a00031905 Zea mays B104 HOM05M002907 ORTHO05M003500 1.0e-20 104.0 198 35.9
GWHGAORA015092 Cenchrus purpureus HOM05M002907 ORTHO05M003500 1.3e-20 103.6 217 32.7
GWHGAORA058139 Cenchrus purpureus HOM05M002907 ORTHO05M003500 1.3e-20 103.6 217 32.7
Dexi1A01G0002450 Digitaria exilis HOM05M002907 ORTHO05M003500 1.3e-20 103.6 217 32.7
Dexi1B01G0002390 Digitaria exilis HOM05M002907 ORTHO05M003500 1.3e-20 103.6 217 32.7
Glyma.17G146500 Glycine max HOM05M002907 ORTHO05M003500 1.3e-20 103.6 206 32.5
Glyma.05G064700 Glycine max HOM05M002907 ORTHO05M003500 1.7e-20 103.2 198 33.8
p5.00_sc00024_p0057 Elaeis guineensis HOM05M002907 ORTHO05M003500 2.3e-20 102.8 221 30.8
EJB05_25394 Eragrostis curvula HOM05M002907 ORTHO05M003500 2.9e-20 102.4 217 31.8
PH02Gene10231 Phyllostachys edulis HOM05M002907 ORTHO05M003500 8.6e-20 100.9 202 34.2
PH02Gene14601 Phyllostachys edulis HOM05M002907 ORTHO05M003500 8.6e-20 100.9 217 32.3
PH02Gene10232 Phyllostachys edulis HOM05M002907 ORTHO05M003500 1.9e-19 99.8 202 34.2
p5.00_sc00169_p0032 Elaeis guineensis HOM05M002907 ORTHO05M003500 3.3e-19 99.0 218 30.3
Ot_Chr1_g14230 Oropetium thomaeum HOM05M002907 ORTHO05M003500 3.3e-19 99.0 217 32.3
Aco018627 Ananas comosus HOM05M002907 ORTHO05M003500 4.3e-19 98.6 221 30.3
Glyma.01G205200 Glycine max HOM05M002907 ORTHO05M003500 5.6e-19 98.2 206 32.5
evm.TU.AsparagusV1_07.633.V1.1 Asparagus officinalis HOM05M002907 ORTHO05M003500 1.2e-18 97.1 211 32.7
GWHGAZTO016371 Oryza alta HOM05M002907 ORTHO05M003500 2.1e-18 96.3 217 31.8
GWHGAZTO068100 Oryza alta HOM05M002907 ORTHO05M003500 2.8e-18 95.9 217 31.8
OsKitaake02g020700 Oryza sativa Kitaake HOM05M002907 ORTHO05M003500 2.8e-18 95.9 217 31.3
OsR498G0202878700.01 Oryza sativa ssp. indica HOM05M002907 ORTHO05M003500 2.8e-18 95.9 217 31.3
Os02g0125300 Oryza sativa ssp. japonica HOM05M002907 ORTHO05M003500 2.8e-18 95.9 217 31.3
CDE12G0326 Ceratophyllum demersum HOM05M002907 ORTHO05M003500 3.6e-18 95.5 217 30.4
Glyma.11G037700 Glycine max HOM05M002907 ORTHO05M003500 4.7e-18 95.1 238 29.0
OB02G11940 Oryza brachyantha HOM05M002907 ORTHO05M003500 6.1e-18 94.7 217 30.9
Horvu_MOREX_6H01G094100 Hordeum vulgare HOM05M002907 ORTHO05M003500 1.4e-17 93.6 217 30.9
Bradi3g02520 Brachypodium distachyon HOM05M002907 ORTHO05M003500 1.8e-17 93.2 217 31.3
TraesCS6D03G0161200 Triticum aestivum HOM05M002907 ORTHO05M003500 2.3e-17 92.8 217 30.9
Ma06_g38930 Musa acuminata HOM05M002907 ORTHO05M003500 3.0e-17 92.4 221 29.0
Ma07_g07470 Musa acuminata HOM05M002907 ORTHO05M003500 3.0e-17 92.4 218 30.7
GWHGASIY030775 Secale cereale HOM05M002907 ORTHO05M003500 3.0e-17 92.4 217 30.9
GWHGASIY032346 Secale cereale HOM05M002907 ORTHO05M003500 3.0e-17 92.4 217 30.9
V3.Lp_chr6_0G9582 Lolium perenne HOM05M002907 ORTHO05M003500 4.0e-17 92.0 217 30.9
TraesCS6A03G0188400 Triticum aestivum HOM05M002907 ORTHO05M003500 4.0e-17 92.0 217 30.4
TraesCS6B03G0277700 Triticum aestivum HOM05M002907 ORTHO05M003500 4.0e-17 92.0 217 30.4
TRITD6Bv1G033580 Triticum turgidum HOM05M002907 ORTHO05M003500 4.0e-17 92.0 217 30.4
Zm00007a00027212 Zea mays B104 HOM05M002907 ORTHO05M003500 4.0e-17 92.0 226 32.7
AET6Gv20209500 Aegilops tauschii HOM05M002907 ORTHO05M003500 5.2e-17 91.7 210 31.4
PH02Gene36632 Phyllostachys edulis HOM05M002907 ORTHO05M003500 6.8e-17 91.3 217 30.0
TRITD6Av1G021220 Triticum turgidum HOM05M002907 ORTHO05M003500 8.9e-17 90.9 210 31.0
Zjn_sc00037.1.g05560.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002907 ORTHO05M003500 1.5e-16 90.1 198 32.3
HPP92_022270 Vanilla planifolia HOM05M002907 ORTHO05M003500 2.0e-16 89.7 223 28.7
Zosma06g26850 Zostera marina HOM05M002907 ORTHO05M003500 2.6e-16 89.4 217 26.7
GWHGAORA015112 Cenchrus purpureus HOM05M002907 ORTHO05M003500 4.4e-16 88.6 217 30.4
Potri.001G151800 Populus trichocarpa HOM05M002907 ORTHO05M003500 4.4e-16 88.6 198 30.3
HPP92_022395 Vanilla planifolia HOM05M002907 ORTHO05M003500 5.7e-16 88.2 223 27.8
ATR0684G045 Amborella trichopoda HOM05M002907 ORTHO05M003500 7.5e-16 87.8 210 30.5
DDU681G0088 Dioscorea dumetorum HOM05M002522 ORTHO05M003500 7.5e-16 87.8 216 28.7
CALSI_Maker00005915 Calamus simplicifolius HOM05M002907 ORTHO05M003500 2.9e-15 85.9 172 32.6
Potri.003G082700 Populus trichocarpa HOM05M002907 ORTHO05M003500 3.7e-15 85.5 198 30.3
Zm00001eb379560 Zea mays B73 HOM05M002907 ORTHO05M003500 6.4e-15 84.7 211 31.8
Seita.4G000800 Setaria italica HOM05M002907 ORTHO05M003500 1.1e-14 84.0 221 30.3
Sevir.4G001200 Setaria viridis HOM05M002907 ORTHO05M003500 1.1e-14 84.0 221 30.3
Misin19G004000 Miscanthus sinensis HOM05M002907 ORTHO05M003500 1.4e-14 83.6 218 30.3
Sobic.010G000300 Sorghum bicolor HOM05M002907 ORTHO05M003500 1.8e-14 83.2 211 31.3
CDE04G2711 Ceratophyllum demersum HOM05M002907 ORTHO05M003500 2.4e-14 82.8 236 27.1
Pahal.4G360300 Panicum hallii HOM05M002907 ORTHO05M003500 2.4e-14 82.8 218 28.9
Zm00007a00012843 Zea mays B104 HOM05M002907 ORTHO05M003500 2.4e-14 82.8 217 31.3
ATR0665G511 Amborella trichopoda HOM05M002907 ORTHO05M003500 4.1e-14 82.0 191 31.4
AT4G17580 Arabidopsis thaliana HOM05M002907 ORTHO05M003500 4.1e-14 82.0 188 28.7
GWHGAORA054000 Cenchrus purpureus HOM05M002907 ORTHO05M003500 5.4e-14 81.6 218 29.4
MisinT023200 Miscanthus sinensis HOM05M002907 ORTHO05M003500 7.0e-14 81.3 211 30.8
SEGI_13569 Sequoiadendron giganteum HOM05M002907 ORTHO05M003500 7.0e-14 81.3 191 31.9
Solyc01g090020.3 Solanum lycopersicum HOM05M002907 ORTHO05M249919 1.2e-13 80.5 81 50.6
GWHGAORA017741 Cenchrus purpureus HOM05M002907 ORTHO05M003500 2.0e-13 79.7 218 28.9
PH02Gene07557 Phyllostachys edulis HOM05M002907 ORTHO05M003500 4.6e-13 78.6 195 30.3
Asa5G00491 Allium sativum HOM05M002907 ORTHO05M003500 5.9e-13 78.2 218 26.1
EJB05_55315 Eragrostis curvula HOM05M002907 ORTHO05M003500 7.8e-13 77.8 215 29.8
Sspon.08G0024580-1B Saccharum spontaneum HOM05M002907 ORTHO05M003500 1.3e-12 77.0 191 31.4
Ot_Chr10_gn30002 Oropetium thomaeum HOM05M002907 ORTHO05M003500 2.3e-12 76.3 209 30.1
EJB05_55325 Eragrostis curvula HOM05M002907 ORTHO05M003500 3.0e-12 75.9 190 31.1
Sspon.08G0024580-2D Saccharum spontaneum HOM05M002907 ORTHO05M003500 3.9e-12 75.5 189 32.3
Solyc03g113840.3 Solanum lycopersicum HOM05M002421 ORTHO05M002833 8.6e-12 74.3 123 39.0
Pp3c1_12850 Physcomitrium patens HOM05M002907 ORTHO05M003500 1.1e-11 73.9 210 26.2
Spipo0G0073300 Spirodela polyrhiza HOM05M002907 ORTHO05M003500 4.3e-11 72.0 200 28.0
AT5G47130 Arabidopsis thaliana HOM05M002907 ORTHO05M003500 1.2e-10 70.5 193 29.5
AagrBONN_evm.TU.Sc2ySwM_344.3906 Anthoceros agrestis HOM05M002907 ORTHO05M003500 1.4e-09 67.0 211 26.1
Spipo5G0050900 Spirodela polyrhiza HOM05M002907 ORTHO05M003500 1.3e-07 60.5 213 24.9
Solyc08g077980.4 Solanum lycopersicum HOM05M002907 ORTHO05M003500 3.7e-07 58.9 161 29.2
CALSI_Maker00020012 Calamus simplicifolius HOM05M002907 ORTHO05M003500 6.4e-07 58.2 95 34.7
CALSI_Maker00033725 Calamus simplicifolius HOM05M002907 ORTHO05M003500 6.4e-07 58.2 95 34.7


User provided reference genes

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