Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g067230.4 Solanum lycopersicum HOM05M000466 ORTHO05M012039 3.1e-43 177.2 83 100.0
Solyc01g067100.4 Solanum lycopersicum HOM05M000466 ORTHO05M001688 2.8e-20 100.9 95 56.8
Asa1G03892 Allium sativum HOM05M000466 ORTHO05M001688 3.5e-18 94.0 94 53.2
Asa1G03898 Allium sativum HOM05M000466 ORTHO05M001688 3.5e-18 94.0 94 53.2
evm.TU.AsparagusV1_08.3136.V1.1 Asparagus officinalis HOM05M000466 ORTHO05M001688 3.5e-18 94.0 97 52.6
Asa2G06269 Allium sativum HOM05M000466 ORTHO05M001688 5.9e-18 93.2 94 53.2
MBI19_g23989_MAGBIO Magnolia biondii HOM05M000466 ORTHO05M001688 7.7e-18 92.8 94 53.2
Potri.008G217300 Populus trichocarpa HOM05M000466 ORTHO05M001688 7.7e-18 92.8 94 53.2
Spipo6G0000700 Spirodela polyrhiza HOM05M000466 ORTHO05M001688 1.3e-17 92.0 94 54.3
AT4G02570 Arabidopsis thaliana HOM05M000466 ORTHO05M001688 2.3e-17 91.3 94 53.2
evm.TU.AsparagusV1_02.2104.V1.1 Asparagus officinalis HOM05M000466 ORTHO05M001688 2.3e-17 91.3 97 49.5
Potri.010G023800 Populus trichocarpa HOM05M000466 ORTHO05M001688 2.3e-17 91.3 95 51.6
Glyma.09G046500 Glycine max HOM05M000466 ORTHO05M001688 2.9e-17 90.9 94 52.1
Glyma.15G154000 Glycine max HOM05M000466 ORTHO05M001688 2.9e-17 90.9 94 52.1
Spipo6G0045800 Spirodela polyrhiza HOM05M000466 ORTHO05M001688 2.9e-17 90.9 94 53.2
ATR0680G172 Amborella trichopoda HOM05M000466 ORTHO05M001688 3.8e-17 90.5 102 46.1
Aco002432 Ananas comosus HOM05M000466 ORTHO05M001688 3.8e-17 90.5 94 51.1
Dexi3A01G0011460 Digitaria exilis HOM05M000466 ORTHO05M001688 5.0e-17 90.1 94 52.1
Dexi3B01G0011540 Digitaria exilis HOM05M000466 ORTHO05M001688 5.0e-17 90.1 94 52.1
Ma00_g01260 Musa acuminata HOM05M000466 ORTHO05M001688 5.0e-17 90.1 94 51.1
Ot_Chr5_g02926 Oropetium thomaeum HOM05M000466 ORTHO05M001688 5.0e-17 90.1 94 52.1
Solyc06g084520.3 Solanum lycopersicum HOM05M000466 ORTHO05M001688 5.0e-17 90.1 94 51.1
Zjn_sc00166.1.g00340.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000466 ORTHO05M001688 5.0e-17 90.1 94 52.1
Aco007282 Ananas comosus HOM05M000466 ORTHO05M001688 6.6e-17 89.7 94 50.0
Glyma.07G249100 Glycine max HOM05M000466 ORTHO05M001688 6.6e-17 89.7 94 51.1
Glyma.17G025200 Glycine max HOM05M000466 ORTHO05M001688 6.6e-17 89.7 94 51.1
DDU479G0278 Dioscorea dumetorum HOM05M000466 ORTHO05M001688 8.6e-17 89.4 94 51.1
p5.00_sc00070_p0132 Elaeis guineensis HOM05M000466 ORTHO05M001688 8.6e-17 89.4 94 51.1
Ma07_g03810 Musa acuminata HOM05M000466 ORTHO05M001688 8.6e-17 89.4 94 51.1
Sspon.07G0013010-1A Saccharum spontaneum HOM05M000466 ORTHO05M001688 8.6e-17 89.4 95 50.5
Sspon.07G0013010-2B Saccharum spontaneum HOM05M000466 ORTHO05M001688 8.6e-17 89.4 95 50.5
CALSI_Maker00017309 Calamus simplicifolius HOM05M000466 ORTHO05M001688 1.1e-16 89.0 94 51.1
p5.00_sc00021_p0039 Elaeis guineensis HOM05M000466 ORTHO05M001688 1.1e-16 89.0 94 51.1
p5.00_sc00021_p0040 Elaeis guineensis HOM05M000466 ORTHO05M001688 1.1e-16 89.0 94 51.1
GWHGAORA004548 Cenchrus purpureus HOM05M000466 ORTHO05M001688 1.5e-16 88.6 94 51.1
Glyma.19G208600 Glycine max HOM05M000466 ORTHO05M001688 1.5e-16 88.6 102 46.1
Misin16G033500 Miscanthus sinensis HOM05M000466 ORTHO05M001688 1.5e-16 88.6 94 51.1
Ma01_g08230 Musa acuminata HOM05M000466 ORTHO05M001688 1.5e-16 88.6 94 51.1
Pahal.3G119000 Panicum hallii HOM05M000466 ORTHO05M001688 1.5e-16 88.6 94 51.1
PH02Gene42206 Phyllostachys edulis HOM05M000466 ORTHO05M001688 1.5e-16 88.6 94 51.1
Sevir.3G038900 Setaria viridis HOM05M000466 ORTHO05M001688 1.5e-16 88.6 94 51.1
Sobic.009G044800 Sorghum bicolor HOM05M000466 ORTHO05M001688 1.5e-16 88.6 94 51.1
Zm00001eb354170 Zea mays B73 HOM05M000466 ORTHO05M001688 1.5e-16 88.6 94 51.1
Zosma03g30670 Zostera marina HOM05M000466 ORTHO05M001688 1.5e-16 88.6 94 52.1
evm.TU.AsparagusV1_07.1008.V1.1 Asparagus officinalis HOM05M000466 ORTHO05M001688 1.9e-16 88.2 94 50.0
V3.Lp_chr1_0G3640 Lolium perenne HOM05M000466 ORTHO05M001688 2.5e-16 87.8 94 51.1
Mapoly0012s0104 Marchantia polymorpha HOM05M000466 ORTHO05M001688 2.5e-16 87.8 101 46.5
PH02Gene30110 Phyllostachys edulis HOM05M000466 ORTHO05M001688 2.5e-16 87.8 94 51.1
EJB05_33873 Eragrostis curvula HOM05M000466 ORTHO05M001688 3.3e-16 87.4 94 51.1
PH02Gene17371 Phyllostachys edulis HOM05M000466 ORTHO05M001688 3.3e-16 87.4 94 50.0
PH02Gene33018 Phyllostachys edulis HOM05M000466 ORTHO05M210075 3.3e-16 87.4 94 50.0
Sspon.07G0013010-3C Saccharum spontaneum HOM05M000466 ORTHO05M001688 3.3e-16 87.4 94 50.0
Sspon.07G0013010-4D Saccharum spontaneum HOM05M000466 ORTHO05M001688 3.3e-16 87.4 94 50.0
SEGI_28641 Sequoiadendron giganteum HOM05M000466 ORTHO05M001688 3.3e-16 87.4 94 50.0
AET1Gv20241400 Aegilops tauschii HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
Bradi2g35820 Brachypodium distachyon HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
Horvu_MOREX_1H01G137800 Hordeum vulgare HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
Horvu_MOREX_1H01G137900 Hordeum vulgare HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
GWHGASIY001166 Secale cereale HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
GWHGASIY001220 Secale cereale HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
GWHGASIY002638 Secale cereale HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
GWHGASIY041177 Secale cereale HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
TraesCS1A03G0218100 Triticum aestivum HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
TraesCS1B03G0321200 Triticum aestivum HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
TraesCS1B03G0321300 Triticum aestivum HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
TraesCS1D03G0231100 Triticum aestivum HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
TraesCS1D03G0231200 Triticum aestivum HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
TRIDC1BG017060 Triticum dicoccoides HOM05M000466 ORTHO05M012039 4.2e-16 87.0 94 50.0
TRITD1Bv1G047400 Triticum turgidum HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
TRITD1Bv1G047460 Triticum turgidum HOM05M000466 ORTHO05M001688 4.2e-16 87.0 94 50.0
GWHGAZTO002647 Oryza alta HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 50.0
GWHGAZTO032760 Oryza alta HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 51.1
GWHGAZTO055081 Oryza alta HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 50.0
OsKitaake01g168800 Oryza sativa Kitaake HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 50.0
OsKitaake05g037100 Oryza sativa Kitaake HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 51.1
OsR498G0100968000.01 Oryza sativa ssp. indica HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 50.0
OsR498G0509739800.01 Oryza sativa ssp. indica HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 51.1
Os01g0369000 Oryza sativa ssp. japonica HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 50.0
TraesCS1A03G0218200 Triticum aestivum HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 50.0
TRITD1Av1G035440 Triticum turgidum HOM05M000466 ORTHO05M001688 5.5e-16 86.7 94 50.0
Asa4G01241 Allium sativum HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
EJB05_30470 Eragrostis curvula HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
Misin05G155300 Miscanthus sinensis HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
Misin06G147400 Miscanthus sinensis HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
OB01G25350 Oryza brachyantha HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
PH02Gene33013 Phyllostachys edulis HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
PH02Gene38548 Phyllostachys edulis HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
Seita.5G167800 Setaria italica HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
Sevir.5G167700 Setaria viridis HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
Sobic.003G164200 Sorghum bicolor HOM05M000466 ORTHO05M001688 7.2e-16 86.3 94 50.0
OB05G13290 Oryza brachyantha HOM05M000466 ORTHO05M001688 1.2e-15 85.5 94 51.1
Potri.001G117200 Populus trichocarpa HOM05M000466 ORTHO05M001688 1.2e-15 85.5 94 50.0
CDE12G0231 Ceratophyllum demersum HOM05M000466 ORTHO05M001688 1.6e-15 85.1 94 50.0
GWHGAZTO081790 Oryza alta HOM05M000466 ORTHO05M001688 1.6e-15 85.1 94 50.0
Ot_Chr3_gn33824 Oropetium thomaeum HOM05M000466 ORTHO05M001688 2.8e-15 84.3 94 48.9
Potri.003G115500 Populus trichocarpa HOM05M000466 ORTHO05M001688 2.8e-15 84.3 94 48.9
Solyc09g074680.3 Solanum lycopersicum HOM05M000466 ORTHO05M001688 2.8e-15 84.3 94 48.9
TRITD1Av1G035420 Triticum turgidum HOM05M000466 ORTHO05M001688 2.8e-15 84.3 92 50.0
CDE01G0396 Ceratophyllum demersum HOM05M000466 ORTHO05M001688 3.6e-15 84.0 94 48.9
Glyma.03G211400 Glycine max HOM05M000466 ORTHO05M001688 4.7e-15 83.6 102 44.1
Seita.3G037700 Setaria italica HOM05M000466 ORTHO05M001688 4.7e-15 83.6 90 50.0
PH02Gene33010 Phyllostachys edulis HOM05M000466 ORTHO05M001688 6.1e-15 83.2 96 46.9
Zm00001eb418160 Zea mays B73 HOM05M000466 ORTHO05M001688 8.0e-15 82.8 94 48.9
Zm00007a00009835 Zea mays B104 HOM05M000466 ORTHO05M001688 8.0e-15 82.8 94 48.9
CALSI_Maker00017327 Calamus simplicifolius HOM05M000466 ORTHO05M001688 1.4e-14 82.0 113 42.5
Zosma02g17440 Zostera marina HOM05M000466 ORTHO05M001688 1.4e-14 82.0 94 47.9
Pp3c16_1640 Physcomitrium patens HOM05M000466 ORTHO05M001688 1.8e-14 81.6 102 43.1
SMO146G0265 Selaginella moellendorffii HOM05M000466 ORTHO05M001688 1.8e-14 81.6 94 47.9
V3.Lp_chr1_0G3638 Lolium perenne HOM05M000466 ORTHO05M001688 4.0e-14 80.5 94 46.8
SEGI_15967 Sequoiadendron giganteum HOM05M000466 ORTHO05M001688 6.8e-14 79.7 94 45.7
Bradi2g35830 Brachypodium distachyon HOM05M000466 ORTHO05M001688 8.9e-14 79.3 94 44.7
GWHGAORA039401 Cenchrus purpureus HOM05M000466 ORTHO05M001688 2.0e-13 78.2 91 49.5
Pp3c5_14660 Physcomitrium patens HOM05M000466 ORTHO05M001688 2.0e-13 78.2 102 42.2
Aco002431 Ananas comosus HOM05M000466 ORTHO05M001688 5.7e-13 76.6 94 44.7
HPP92_017215 Vanilla planifolia HOM05M000466 ORTHO05M001688 5.7e-13 76.6 98 43.9
GWHGASIY033229 Secale cereale HOM05M000466 ORTHO05M001688 7.5e-13 76.3 97 41.2
AagrBONN_evm.TU.Sc2ySwM_362.889 Anthoceros agrestis HOM05M000466 ORTHO05M001688 1.7e-12 75.1 97 42.3
CBR_g8476 Chara braunii HOM05M000466 ORTHO05M001688 1.7e-12 75.1 100 41.0
V3.Lp_chr1_0G6712 Lolium perenne HOM05M000466 ORTHO05M001688 2.9e-12 74.3 98 38.8
GWHGASIY001181 Secale cereale HOM05M000466 ORTHO05M001688 3.7e-12 73.9 97 40.2
GWHGASIY012794 Secale cereale HOM05M000466 ORTHO05M001688 3.7e-12 73.9 97 40.2
GWHGAORA043470 Cenchrus purpureus HOM05M000466 ORTHO05M001688 4.9e-12 73.6 92 45.7
Pp3c6_12900 Physcomitrium patens HOM05M000466 ORTHO05M001688 4.9e-12 73.6 94 44.7
Solyc01g067200.1 Solanum lycopersicum HOM05M000466 ORTHO05M012039 4.9e-12 73.6 104 42.3
Dexi5A01G0015810 Digitaria exilis HOM05M000466 ORTHO05M001688 6.3e-12 73.2 92 45.7
CALSI_Maker00042814 Calamus simplicifolius HOM05M000466 ORTHO05M001688 8.3e-12 72.8 136 35.3
MCO07G183 Micromonas commoda HOM05M000466 ORTHO05M001688 8.3e-12 72.8 94 41.5
PRCOL_00006106 Prasinoderma coloniale HOM05M000466 ORTHO05M001688 1.1e-11 72.4 98 39.8
Dexi5B01G0016000 Digitaria exilis HOM05M000466 ORTHO05M001688 1.4e-11 72.0 92 45.7
Bradi2g12970 Brachypodium distachyon HOM05M000466 ORTHO05M001688 1.8e-11 71.6 97 38.1
AET3Gv20079800 Aegilops tauschii HOM05M000466 ORTHO05M001688 2.4e-11 71.2 96 38.5
TraesCS3D03G0073200 Triticum aestivum HOM05M000466 ORTHO05M001688 2.4e-11 71.2 96 38.5
Cre17.g734400 Chlamydomonas reinhardtii HOM05M000466 ORTHO05M001688 5.4e-11 70.1 94 40.4
Misin10G053400 Miscanthus sinensis HOM05M000466 ORTHO05M012039 5.4e-11 70.1 38 84.2
Misin15G081000 Miscanthus sinensis HOM05M000466 ORTHO05M012039 5.4e-11 70.1 38 84.2
TRIDC3BG006030 Triticum dicoccoides HOM05M000466 ORTHO05M001688 5.4e-11 70.1 96 39.6
Horvu_MOREX_3H01G045700 Hordeum vulgare HOM05M000466 ORTHO05M001688 9.2e-11 69.3 97 36.1
Seita.5G167900 Setaria italica HOM05M000466 ORTHO05M001688 9.2e-11 69.3 97 41.2
TraesCS3B03G0101200 Triticum aestivum HOM05M000466 ORTHO05M001688 9.2e-11 69.3 96 37.5
Asa7G05981 Allium sativum HOM05M000466 ORTHO05M012039 1.2e-10 68.9 33 90.9
GWHGAORA001479 Cenchrus purpureus HOM05M000466 ORTHO05M001688 1.2e-10 68.9 92 42.4
Sevir.5G167800 Setaria viridis HOM05M000466 ORTHO05M001688 1.6e-10 68.6 97 41.2
EJB05_30471 Eragrostis curvula HOM05M000466 ORTHO05M001688 3.5e-10 67.4 97 40.2
Misin13G068500 Miscanthus sinensis HOM05M000466 ORTHO05M012039 3.5e-10 67.4 32 90.6
Zm00007a00027463 Zea mays B104 HOM05M000466 ORTHO05M001688 3.5e-10 67.4 32 90.6
Zjn_sc00016.1.g04270.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000466 ORTHO05M001688 3.5e-10 67.4 32 90.6
CALSI_Maker00017308 Calamus simplicifolius HOM05M000466 ORTHO05M001688 5.9e-10 66.6 33 87.9
Dexi5A01G0015800 Digitaria exilis HOM05M000466 ORTHO05M001688 1.0e-09 65.9 32 87.5
Dexi5B01G0015980 Digitaria exilis HOM05M000466 ORTHO05M012039 1.0e-09 65.9 32 87.5
GWHGAZTO055083 Oryza alta HOM05M000466 ORTHO05M001688 1.1e-08 62.4 97 32.0
Sobic.002G141600 Sorghum bicolor HOM05M000466 ORTHO05M012919 1.1e-08 62.4 97 32.0
CALSI_Maker00017302 Calamus simplicifolius HOM05M000466 ORTHO05M081191 2.5e-08 61.2 34 76.5
EJB05_30472 Eragrostis curvula HOM05M000466 ORTHO05M001688 5.6e-08 60.1 97 36.1
GWHGAZTO002653 Oryza alta HOM05M000466 ORTHO05M001688 5.6e-08 60.1 97 32.0
Sspon.03G0014150-2B Saccharum spontaneum HOM05M000466 ORTHO05M001688 5.6e-08 60.1 92 39.1
OsKitaake01g168900 Oryza sativa Kitaake HOM05M000466 ORTHO05M001688 9.5e-08 59.3 97 32.0
OsR498G0100968500.01 Oryza sativa ssp. indica HOM05M000466 ORTHO05M001688 9.5e-08 59.3 97 32.0
Os01g0369200 Oryza sativa ssp. japonica HOM05M000466 ORTHO05M001688 9.5e-08 59.3 97 32.0
TraesCS3A03G0078500 Triticum aestivum HOM05M000466 ORTHO05M001688 9.5e-08 59.3 90 35.6
MBI19_g41324_MAGBIO Magnolia biondii HOM05M000466 ORTHO05M001688 1.6e-07 58.5 100 34.0
Sobic.003G164300 Sorghum bicolor HOM05M000466 ORTHO05M001688 2.1e-07 58.2 92 39.1
OsR498G1221172800.01 Oryza sativa ssp. indica HOM05M000466 ORTHO05M001688 2.8e-07 57.8 97 30.9
Ma01_g19440 Musa acuminata HOM05M000466 ORTHO05M001688 3.6e-07 57.4 100 34.0
Misin06G147600 Miscanthus sinensis HOM05M000466 ORTHO05M001688 4.7e-07 57.0 97 36.1
Sspon.03G0014150-3C Saccharum spontaneum HOM05M000466 ORTHO05M001688 4.7e-07 57.0 97 37.1
Solyc06g008080.2 Solanum lycopersicum HOM05M000466 ORTHO05M010405 6.1e-07 56.6 92 37.0
AT1G43140 Arabidopsis thaliana HOM05M000466 ORTHO05M001688 8.0e-07 56.2 93 35.5
Seita.8G117300 Setaria italica HOM05M000466 ORTHO05M012039 1.0e-06 55.8 33 75.8
Solyc09g010050.1 Solanum lycopersicum HOM05M000466 ORTHO05M001688 2.3e-06 54.7 98 33.7
Aco020260 Ananas comosus HOM05M000466 ORTHO05M001688 8.9e-06 52.8 95 28.4


User provided reference genes

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