Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g049890.3 Solanum lycopersicum HOM05M002944 ORTHO05M003387 2.0e-175 618.2 316 100.0
Potri.001G000900 Populus trichocarpa HOM05M002944 ORTHO05M003387 1.2e-87 326.6 293 56.7
CALSI_Maker00016787 Calamus simplicifolius HOM05M002944 ORTHO05M003387 1.1e-85 320.1 320 51.2
p5.00_sc00015_p0102 Elaeis guineensis HOM05M002944 ORTHO05M003387 1.9e-85 319.3 321 50.5
p5.00_sc00003_p0395 Elaeis guineensis HOM05M002944 ORTHO05M003387 1.5e-82 309.7 321 50.8
Glyma.12G020500 Glycine max HOM05M002944 ORTHO05M003387 2.9e-81 305.4 321 52.3
MBI19_g24076_MAGBIO Magnolia biondii HOM05M002944 ORTHO05M003387 5.5e-80 301.2 321 47.7
ATR0068G043 Amborella trichopoda HOM05M002944 ORTHO05M003387 7.1e-80 300.8 319 48.9
CALSI_Maker00035436 Calamus simplicifolius HOM05M002944 ORTHO05M003387 7.1e-80 300.8 342 47.1
Aco007159 Ananas comosus HOM05M002944 ORTHO05M003387 3.0e-78 295.4 313 48.6
DDU256G0649 Dioscorea dumetorum HOM05M002944 ORTHO05M003387 6.7e-78 294.3 320 46.9
Ma06_g00920 Musa acuminata HOM05M002944 ORTHO05M003387 1.4e-75 286.6 319 49.2
Glyma.11G094000 Glycine max HOM05M002944 ORTHO05M003387 6.9e-75 284.3 299 50.8
Zosma01g28770 Zostera marina HOM05M002944 ORTHO05M003387 1.5e-74 283.1 314 48.4
Ma07_g23250 Musa acuminata HOM05M002944 ORTHO05M003387 2.2e-73 279.3 320 48.8
CDE11G0372 Ceratophyllum demersum HOM05M002944 ORTHO05M003387 1.3e-70 270.0 319 46.4
AT3G13410 Arabidopsis thaliana HOM05M002944 ORTHO05M003387 1.8e-70 269.6 317 48.3
CDE02G0988 Ceratophyllum demersum HOM05M002944 ORTHO05M003387 3.3e-69 265.4 320 46.6
Asa1G01489 Allium sativum HOM05M002944 ORTHO05M003387 5.3e-67 258.1 313 43.8
Horvu_MOREX_5H01G248900 Hordeum vulgare HOM05M002944 ORTHO05M003387 9.0e-67 257.3 317 43.8
Potri.003G223601 Populus trichocarpa HOM05M002944 ORTHO05M003387 9.0e-67 257.3 259 54.4
HPP92_021175 Vanilla planifolia HOM05M002944 ORTHO05M003387 1.5e-66 256.5 316 45.6
V3.Lp_chr5_0G8502 Lolium perenne HOM05M002944 ORTHO05M003387 4.5e-66 255.0 320 43.8
Ot_Chr2_g22095 Oropetium thomaeum HOM05M002944 ORTHO05M003387 2.2e-65 252.7 317 44.2
PH02Gene47125 Phyllostachys edulis HOM05M002944 ORTHO05M003387 5.0e-65 251.5 314 42.4
TraesCS5B03G0393800 Triticum aestivum HOM05M002944 ORTHO05M003387 5.0e-65 251.5 318 44.0
TRIDC5BG025250 Triticum dicoccoides HOM05M002944 ORTHO05M003387 5.0e-65 251.5 318 44.0
TRITD5Bv1G090790 Triticum turgidum HOM05M002944 ORTHO05M003387 5.0e-65 251.5 318 44.0
TraesCS5A03G0397600 Triticum aestivum HOM05M002944 ORTHO05M003387 6.5e-65 251.1 318 44.0
TRIDC5AG024050 Triticum dicoccoides HOM05M002944 ORTHO05M003387 6.5e-65 251.1 318 44.0
TRITD5Av1G108900 Triticum turgidum HOM05M002944 ORTHO05M003387 6.5e-65 251.1 318 44.0
Dexi3A01G0001370 Digitaria exilis HOM05M002944 ORTHO05M003387 8.5e-65 250.8 317 44.5
GWHGAORA043054 Cenchrus purpureus HOM05M002944 ORTHO05M003387 1.1e-64 250.4 317 43.5
GWHGAZTO065458 Oryza alta HOM05M002944 ORTHO05M003387 1.9e-64 249.6 318 45.0
Pahal.3G013100 Panicum hallii HOM05M002944 ORTHO05M003387 1.9e-64 249.6 318 43.1
TraesCS4B03G0305400 Triticum aestivum HOM05M002944 ORTHO05M003387 1.9e-64 249.6 297 43.4
GWHGAZTO010252 Oryza alta HOM05M002944 ORTHO05M003387 3.2e-64 248.8 292 46.2
PH02Gene40189 Phyllostachys edulis HOM05M002944 ORTHO05M003387 5.5e-64 248.1 317 43.5
OsKitaake12g017400 Oryza sativa Kitaake HOM05M002944 ORTHO05M003387 7.2e-64 247.7 318 44.7
Os12g0123900 Oryza sativa ssp. japonica HOM05M002944 ORTHO05M003387 7.2e-64 247.7 318 44.7
GWHGASIY025446 Secale cereale HOM05M002944 ORTHO05M003387 7.2e-64 247.7 317 42.6
Bradi4g43990 Brachypodium distachyon HOM05M002944 ORTHO05M003387 9.4e-64 247.3 318 44.0
TRIDC4AG030360 Triticum dicoccoides HOM05M002944 ORTHO05M003387 1.6e-63 246.5 314 42.0
OsKitaake11g014600 Oryza sativa Kitaake HOM05M002944 ORTHO05M003387 2.1e-63 246.1 318 45.3
Os11g0127700 Oryza sativa ssp. japonica HOM05M002944 ORTHO05M003387 2.1e-63 246.1 318 45.3
GWHGASIY019385 Secale cereale HOM05M002944 ORTHO05M003387 2.1e-63 246.1 319 43.6
OsR498G1119354000.01 Oryza sativa ssp. indica HOM05M002944 ORTHO05M003387 3.6e-63 245.4 318 45.0
Seita.7G306600 Setaria italica HOM05M002944 ORTHO05M003387 3.6e-63 245.4 318 43.1
Sevir.7G317400 Setaria viridis HOM05M002944 ORTHO05M003387 3.6e-63 245.4 318 43.1
Seita.8G007900 Setaria italica HOM05M002944 ORTHO05M003387 4.6e-63 245.0 317 42.0
Sevir.8G007300 Setaria viridis HOM05M002944 ORTHO05M003387 4.6e-63 245.0 317 42.0
AET4Gv20264900 Aegilops tauschii HOM05M002944 ORTHO05M003387 6.1e-63 244.6 314 42.0
CALSI_Maker00003096 Calamus simplicifolius HOM05M002944 ORTHO05M003387 6.1e-63 244.6 248 49.6
GWHGAORA040224 Cenchrus purpureus HOM05M002944 ORTHO05M003387 6.1e-63 244.6 318 42.8
Pahal.8G014200 Panicum hallii HOM05M002944 ORTHO05M003387 6.1e-63 244.6 318 42.5
GWHGAORA010731 Cenchrus purpureus HOM05M002944 ORTHO05M003387 7.9e-63 244.2 318 44.0
GWHGAZTO013478 Oryza alta HOM05M002944 ORTHO05M003387 7.9e-63 244.2 321 43.9
Spipo29G0009600 Spirodela polyrhiza HOM05M002944 ORTHO05M003387 1.4e-62 243.4 269 46.8
TRITD4Bv1G056670 Triticum turgidum HOM05M002944 ORTHO05M003387 1.8e-62 243.0 297 43.1
EJB05_02047 Eragrostis curvula HOM05M002944 ORTHO05M003387 2.3e-62 242.7 318 42.5
EJB05_50707 Eragrostis curvula HOM05M002944 ORTHO05M003387 2.3e-62 242.7 317 42.3
TraesCS4A03G0511100 Triticum aestivum HOM05M002944 ORTHO05M003387 2.3e-62 242.7 314 41.7
TRITD4Av1G155740 Triticum turgidum HOM05M002944 ORTHO05M003387 2.3e-62 242.7 314 41.7
GWHGAORA005625 Cenchrus purpureus HOM05M002944 ORTHO05M003387 3.0e-62 242.3 317 42.9
OB11G11240 Oryza brachyantha HOM05M002944 ORTHO05M003387 3.9e-62 241.9 318 43.7
EJB05_29785 Eragrostis curvula HOM05M002944 ORTHO05M003387 5.1e-62 241.5 317 42.0
Zm00001eb093640 Zea mays B73 HOM05M002944 ORTHO05M003387 1.5e-61 240.0 318 43.7
PH02Gene19526 Phyllostachys edulis HOM05M002944 ORTHO05M003387 4.3e-61 238.4 341 40.8
TraesCS4D03G0245700 Triticum aestivum HOM05M002944 ORTHO05M003387 4.3e-61 238.4 302 42.7
OB12G11520 Oryza brachyantha HOM05M002944 ORTHO05M003387 7.4e-61 237.7 318 43.1
Sobic.005G018800 Sorghum bicolor HOM05M002944 ORTHO05M003387 1.7e-60 236.5 321 42.7
Misin09G002800 Miscanthus sinensis HOM05M002944 ORTHO05M003387 2.8e-60 235.7 321 42.7
Zm00001eb195780 Zea mays B73 HOM05M002944 ORTHO05M003387 2.4e-59 232.6 323 41.8
Sspon.05G0020630-1A Saccharum spontaneum HOM05M002944 ORTHO05M003387 4.1e-59 231.9 321 42.1
Misin10G010100 Miscanthus sinensis HOM05M002944 ORTHO05M003387 9.1e-59 230.7 321 42.1
Zjn_sc00005.1.g04890.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002944 ORTHO05M003387 7.7e-58 227.6 314 41.7
TraesCS5D03G0371200 Triticum aestivum HOM05M002944 ORTHO05M003387 3.2e-56 222.2 317 39.7
TRIDC4BG020160 Triticum dicoccoides HOM05M002944 ORTHO05M003387 5.5e-56 221.5 268 42.9
V3.Lp_chr4_0G12866 Lolium perenne HOM05M002944 ORTHO05M003387 1.2e-55 220.3 324 38.6
Dexi3B01G0001490 Digitaria exilis HOM05M002944 ORTHO05M003387 7.9e-55 217.6 318 39.9
Zm00007a00044966 Zea mays B104 HOM05M002944 ORTHO05M003387 1.4e-54 216.9 328 39.3
Dexi8B01G0001260 Digitaria exilis HOM05M002944 ORTHO05M003387 2.3e-54 216.1 318 40.3
Zm00007a00000934 Zea mays B104 HOM05M002944 ORTHO05M003387 7.4e-53 211.1 318 40.6
Misin15G012700 Miscanthus sinensis HOM05M002944 ORTHO05M003387 1.1e-51 207.2 315 39.4
Dexi8A01G0001350 Digitaria exilis HOM05M002944 ORTHO05M003387 1.0e-49 200.7 290 40.0
Sspon.05G0020630-4D Saccharum spontaneum HOM05M002944 ORTHO05M003387 4.7e-47 191.8 318 38.1
PH02Gene18667 Phyllostachys edulis HOM05M002944 ORTHO05M003387 1.0e-46 190.7 235 44.7
Sspon.05G0020630-3C Saccharum spontaneum HOM05M002944 ORTHO05M003387 1.0e-46 190.7 318 38.1
SEGI_28087 Sequoiadendron giganteum HOM05M002944 ORTHO05M003387 2.9e-41 172.6 251 37.8
Misin15G012600 Miscanthus sinensis HOM05M002944 ORTHO05M003387 2.7e-39 166.0 263 35.4
Pp3c1_26860 Physcomitrium patens HOM05M002944 ORTHO05M003387 1.5e-37 160.2 300 31.7
evm.TU.AsparagusV1_07.795.V1.1 Asparagus officinalis HOM05M002944 ORTHO05M003387 3.3e-37 159.1 156 52.6
Pp3c14_9560 Physcomitrium patens HOM05M002944 ORTHO05M003387 2.2e-36 156.4 314 33.8
Mapoly0001s0434 Marchantia polymorpha HOM05M002944 ORTHO05M003387 1.6e-34 150.2 293 33.4
DDU059G0005 Dioscorea dumetorum HOM05M002944 ORTHO05M003387 1.6e-31 140.2 224 34.4
DDU200G0008 Dioscorea dumetorum HOM05M002944 ORTHO05M003387 2.1e-31 139.8 216 35.6
SMO134G0100 Selaginella moellendorffii HOM05M002944 ORTHO05M003387 6.3e-28 128.3 315 32.7
DDU202G0006 Dioscorea dumetorum HOM05M002944 ORTHO05M003387 2.7e-26 122.9 236 31.4
Sspon.05G0020630-2B Saccharum spontaneum HOM05M002944 ORTHO05M003387 1.0e-25 120.9 183 35.5
Zjn_sc00031.1.g00580.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002944 ORTHO05M003387 1.3e-20 104.0 139 42.4
Potri.008G223987 Populus trichocarpa HOM05M002944 ORTHO05M003387 2.2e-20 103.2 118 49.2
AET5Gv20372300 Aegilops tauschii HOM05M002944 ORTHO05M003387 1.8e-19 100.1 105 44.8
AT1G55546 Arabidopsis thaliana HOM05M002944 ORTHO05M003387 1.7e-17 93.6 104 49.0
Pahal.J053200 Panicum hallii HOM05M002944 ORTHO05M003387 5.0e-17 92.0 90 46.7
Potri.012G124888 Populus trichocarpa HOM05M002944 ORTHO05M003387 3.3e-16 89.4 88 51.1
Asa6G05187 Allium sativum HOM05M002944 ORTHO05M003387 5.6e-16 88.6 82 56.1
Zm00007a00006161 Zea mays B104 HOM05M002944 ORTHO05M003387 3.4e-13 79.3 78 46.2
Zm00001eb363780 Zea mays B73 HOM05M002944 ORTHO05M003387 2.9e-12 76.3 75 45.3
Asa4G06066 Allium sativum HOM05M002944 ORTHO05M003387 8.3e-12 74.7 42 88.1
Zm00001eb043250 Zea mays B73 HOM05M002944 ORTHO05M003387 8.3e-12 74.7 70 47.1
Zm00001eb387380 Zea mays B73 HOM05M002944 ORTHO05M003387 8.3e-12 74.7 70 47.1
Zm00007a00022323 Zea mays B104 HOM05M002944 ORTHO05M003387 3.2e-11 72.8 69 46.4
Zm00001eb080660 Zea mays B73 HOM05M002944 ORTHO05M003387 1.6e-10 70.5 86 41.9
Zm00007a00022245 Zea mays B104 HOM05M002944 ORTHO05M003387 2.7e-10 69.7 70 44.3
Zm00007a00032870 Zea mays B104 HOM05M002944 ORTHO05M003387 2.3e-06 56.6 49 44.9


User provided reference genes

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