Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g020190.2 Solanum lycopersicum HOM05M001776 ORTHO05M014198 1.2e-62 242.3 126 100.0
Solyc01g107880.3 Solanum lycopersicum HOM05M001776 ORTHO05M005730 1.6e-38 162.2 121 74.4
Potri.009G099400 Populus trichocarpa HOM05M001776 ORTHO05M005730 7.3e-28 126.7 58 93.1
HPP92_000199 Vanilla planifolia HOM05M001776 ORTHO05M005730 2.4e-26 121.7 69 78.3
DDU430G0056 Dioscorea dumetorum HOM05M001776 ORTHO05M005730 3.1e-26 121.3 78 67.9
DDU911G0014 Dioscorea dumetorum HOM05M001776 ORTHO05M005730 3.1e-26 121.3 78 67.9
AT4G34100 Arabidopsis thaliana HOM05M001776 ORTHO05M005730 4.0e-26 120.9 54 94.4
p5.00_sc00037_p0077 Elaeis guineensis HOM05M001776 ORTHO05M005730 6.9e-26 120.2 83 67.5
p5.00_sc00335_p0006 Elaeis guineensis HOM05M001776 ORTHO05M005730 6.9e-26 120.2 63 81.0
evm.TU.AsparagusV1_Unassigned.826.V1.1 Asparagus officinalis HOM05M001776 ORTHO05M005730 1.5e-25 119.0 63 81.0
HPP92_000230 Vanilla planifolia HOM05M001776 ORTHO05M012790 1.5e-25 119.0 58 86.2
CALSI_Maker00004713 Calamus simplicifolius HOM05M001776 ORTHO05M005730 2.0e-25 118.6 57 91.2
Zosma03g23310 Zostera marina HOM05M001776 ORTHO05M005730 3.4e-25 117.9 81 64.2
Potri.001G304100 Populus trichocarpa HOM05M001776 ORTHO05M005730 2.9e-24 114.8 59 86.4
Aco006412 Ananas comosus HOM05M001776 ORTHO05M005730 3.8e-24 114.4 54 88.9
Asa8G03943 Allium sativum HOM05M001776 ORTHO05M005730 6.4e-24 113.6 60 80.0
Ma01_g20000 Musa acuminata HOM05M001776 ORTHO05M005730 7.1e-23 110.2 56 83.9
CDE02G1550 Ceratophyllum demersum HOM05M001776 ORTHO05M005730 1.2e-22 109.4 70 68.6
CDE04G3492 Ceratophyllum demersum HOM05M001776 ORTHO05M005730 3.5e-22 107.8 61 73.8
Glyma.02G103800 Glycine max HOM05M001776 ORTHO05M005730 3.5e-22 107.8 54 83.3
Glyma.07G215200 Glycine max HOM05M001776 ORTHO05M005730 3.5e-22 107.8 54 83.3
Mapoly0082s0015 Marchantia polymorpha HOM05M001776 ORTHO05M005730 4.6e-22 107.5 70 68.6
Ma03_g12820 Musa acuminata HOM05M001776 ORTHO05M005730 7.9e-22 106.7 56 80.4
SEGI_08024 Sequoiadendron giganteum HOM05M001776 ORTHO05M005730 7.9e-22 106.7 56 82.1
Aco029538 Ananas comosus HOM05M001776 ORTHO05M005730 1.3e-21 105.9 56 78.6
Zm00001eb275450 Zea mays B73 HOM05M001776 ORTHO05M005730 2.3e-21 105.1 61 73.8
PH02Gene11211 Phyllostachys edulis HOM05M001776 ORTHO05M005730 3.0e-21 104.8 61 72.1
Pp3c15_7960 Physcomitrium patens HOM05M001776 ORTHO05M005730 6.7e-21 103.6 60 73.3
Pp3c15_8020 Physcomitrium patens HOM05M001776 ORTHO05M005730 6.7e-21 103.6 60 73.3
ATR0762G060 Amborella trichopoda HOM05M001776 ORTHO05M005730 1.5e-20 102.4 53 79.2
Zjn_sc00069.1.g00790.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M001776 ORTHO05M005730 1.5e-20 102.4 61 70.5
Pp3c9_10370 Physcomitrium patens HOM05M001776 ORTHO05M005730 1.9e-20 102.1 60 71.7
Pp3c9_10380 Physcomitrium patens HOM05M001776 ORTHO05M005730 1.9e-20 102.1 60 71.7
SEGI_06740 Sequoiadendron giganteum HOM05M001776 ORTHO05M005730 1.9e-20 102.1 58 75.9
GWHGAZTO088533 Oryza alta HOM05M001776 ORTHO05M005730 3.3e-20 101.3 56 75.0
OsKitaake06g227400 Oryza sativa Kitaake HOM05M001776 ORTHO05M005730 3.3e-20 101.3 56 75.0
OsR498G0613033800.01 Oryza sativa ssp. indica HOM05M001776 ORTHO05M005730 3.3e-20 101.3 56 75.0
Os06g0639100 Oryza sativa ssp. japonica HOM05M001776 ORTHO05M005730 3.3e-20 101.3 56 75.0
GWHGAZTO039725 Oryza alta HOM05M001776 ORTHO05M005730 4.3e-20 100.9 49 83.7
SMO347G0169 Selaginella moellendorffii HOM05M001776 ORTHO05M005730 5.6e-20 100.5 58 74.1
Dexi4A01G0018460 Digitaria exilis HOM05M001776 ORTHO05M005730 9.6e-20 99.8 56 75.0
Dexi4B01G0018080 Digitaria exilis HOM05M001776 ORTHO05M005730 9.6e-20 99.8 56 75.0
EJB05_41666 Eragrostis curvula HOM05M001776 ORTHO05M005730 9.6e-20 99.8 56 75.0
Asa7G02697 Allium sativum HOM05M001776 ORTHO05M005730 1.3e-19 99.4 57 73.7
GWHGASIY036575 Secale cereale HOM05M001776 ORTHO05M005730 1.3e-19 99.4 56 75.0
GWHGAORA029360 Cenchrus purpureus HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
GWHGAORA057117 Cenchrus purpureus HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Misin18G201500 Miscanthus sinensis HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Misin19G208700 Miscanthus sinensis HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Sspon.08G0008070-1A Saccharum spontaneum HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Sspon.08G0008070-3C Saccharum spontaneum HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Sspon.08G0026070-2D Saccharum spontaneum HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Seita.4G204800 Setaria italica HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Sevir.4G213600 Setaria viridis HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Sobic.010G202600 Sorghum bicolor HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Zm00001eb387290 Zea mays B73 HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Zm00007a00017914 Zea mays B104 HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Zm00007a00030814 Zea mays B104 HOM05M001776 ORTHO05M005730 1.6e-19 99.0 54 75.9
Spipo10G0047900 Spirodela polyrhiza HOM05M001776 ORTHO05M005730 2.1e-19 98.6 50 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2821 Anthoceros agrestis HOM05M001776 ORTHO05M005730 2.8e-19 98.2 53 77.4
Ot_Chr2_g15805 Oropetium thomaeum HOM05M001776 ORTHO05M005730 2.8e-19 98.2 56 73.2
Bradi1g30330 Brachypodium distachyon HOM05M001776 ORTHO05M005730 3.7e-19 97.8 56 73.2
V3.Lp_chr7_0.1G12182 Lolium perenne HOM05M001776 ORTHO05M005730 3.7e-19 97.8 56 73.2
TraesCS7A03G1275300 Triticum aestivum HOM05M001776 ORTHO05M005730 3.7e-19 97.8 56 73.2
TraesCS7B03G1193400 Triticum aestivum HOM05M001776 ORTHO05M005730 3.7e-19 97.8 56 73.2
TraesCS7D03G1212100 Triticum aestivum HOM05M001776 ORTHO05M005730 3.7e-19 97.8 56 73.2
TRITD7Av1G269170 Triticum turgidum HOM05M001776 ORTHO05M005730 3.7e-19 97.8 56 73.2
TRITD7Bv1G221330 Triticum turgidum HOM05M001776 ORTHO05M005730 3.7e-19 97.8 56 73.2
Horvu_MOREX_7H01G701500 Hordeum vulgare HOM05M001776 ORTHO05M005730 6.2e-19 97.1 54 74.1
Pahal.4G072600 Panicum hallii HOM05M001776 ORTHO05M005730 6.2e-19 97.1 56 73.2
AET7Gv21279000 Aegilops tauschii HOM05M001776 ORTHO05M005730 2.4e-18 95.1 53 73.6
CBR_g17730 Chara braunii HOM05M001776 ORTHO05M005730 5.8e-17 90.5 70 60.0
Asa0G00200 Allium sativum HOM05M001776 ORTHO05M005730 1.3e-16 89.4 81 58.0
PH02Gene13665 Phyllostachys edulis HOM05M001776 ORTHO05M005730 1.7e-16 89.0 49 77.6
Pp3c1_24550 Physcomitrium patens HOM05M001776 ORTHO05M005730 1.7e-16 89.0 72 52.8
AET7Gv20865500 Aegilops tauschii HOM05M001776 ORTHO05M010095 3.5e-14 81.3 63 60.3
Horvu_MOREX_7H01G488000 Hordeum vulgare HOM05M001776 ORTHO05M010095 3.5e-14 81.3 63 60.3
GWHGASIY039905 Secale cereale HOM05M001776 ORTHO05M010095 3.5e-14 81.3 63 60.3
TraesCS7A03G0837600 Triticum aestivum HOM05M001776 ORTHO05M010095 3.5e-14 81.3 63 60.3
TraesCS7B03G0694800 Triticum aestivum HOM05M001776 ORTHO05M010095 3.5e-14 81.3 63 60.3
TraesCS7D03G0821100 Triticum aestivum HOM05M001776 ORTHO05M010095 3.5e-14 81.3 63 60.3
TRIDC7BG041370 Triticum dicoccoides HOM05M001776 ORTHO05M010095 3.5e-14 81.3 63 60.3
TRITD7Av1G182030 Triticum turgidum HOM05M001776 ORTHO05M010095 3.5e-14 81.3 63 60.3
V3.Lp_chr7_0.1G8270 Lolium perenne HOM05M001776 ORTHO05M010095 7.9e-14 80.1 63 58.7
Bradi3g12860 Brachypodium distachyon HOM05M001776 ORTHO05M010095 1.0e-13 79.7 64 57.8
V3.Lp_chr3_0G10208 Lolium perenne HOM05M001776 ORTHO05M015075 1.0e-13 79.7 55 56.4
PH02Gene50112 Phyllostachys edulis HOM05M001776 ORTHO05M010095 1.0e-13 79.7 53 62.3
Pahal.6G000200 Panicum hallii HOM05M001776 ORTHO05M010095 1.3e-13 79.3 55 61.8
TRIDC7AG073430 Triticum dicoccoides HOM05M001776 ORTHO05M005730 1.3e-13 79.3 45 71.1
V3.Lp_chr1_0G19582 Lolium perenne HOM05M001776 ORTHO05M010095 2.3e-13 78.6 55 58.2
GWHGAZTO046286 Oryza alta HOM05M001776 ORTHO05M010095 3.0e-13 78.2 53 60.4
AT4G32670 Arabidopsis thaliana HOM05M001776 ORTHO05M010095 3.9e-13 77.8 54 55.6
GWHGAORA013845 Cenchrus purpureus HOM05M001776 ORTHO05M010095 5.1e-13 77.4 44 70.5
Seita.6G000800 Setaria italica HOM05M001776 ORTHO05M010095 5.1e-13 77.4 41 75.6
Sevir.6G000700 Setaria viridis HOM05M001776 ORTHO05M010095 5.1e-13 77.4 41 75.6
GWHGASIY004277 Secale cereale HOM05M001776 ORTHO05M014183 6.7e-13 77.0 54 59.3
Horvu_MOREX_1H01G608300 Hordeum vulgare HOM05M001776 ORTHO05M014198 1.9e-12 75.5 52 55.8
GWHGAORA035401 Cenchrus purpureus HOM05M001776 ORTHO05M010095 2.5e-12 75.1 45 66.7
PRCOL_00003587 Prasinoderma coloniale HOM05M001776 ORTHO05M005730 2.5e-12 75.1 54 61.1
GWHGASIY016559 Secale cereale HOM05M001776 ORTHO05M014198 2.5e-12 75.1 53 56.6
TraesCS1B03G0938600 Triticum aestivum HOM05M001776 ORTHO05M014183 3.3e-12 74.7 54 59.3
EJB05_10362 Eragrostis curvula HOM05M001776 ORTHO05M010095 4.3e-12 74.3 55 54.5
TraesCS1D03G0783600 Triticum aestivum HOM05M001776 ORTHO05M014183 4.3e-12 74.3 54 57.4
AET3Gv20796500 Aegilops tauschii HOM05M001776 ORTHO05M014198 7.4e-12 73.6 51 56.9
GWHGASIY005515 Secale cereale HOM05M001776 ORTHO05M015075 7.4e-12 73.6 63 52.4
Dexi6A01G0000040 Digitaria exilis HOM05M001776 ORTHO05M010095 9.6e-12 73.2 45 66.7
TRITD1Bv1G223790 Triticum turgidum HOM05M001776 ORTHO05M015075 1.3e-11 72.8 63 49.2
TraesCS1A03G0812600 Triticum aestivum HOM05M001776 ORTHO05M014183 1.6e-11 72.4 54 55.6
TRITD1Av1G225860 Triticum turgidum HOM05M001776 ORTHO05M010095 2.1e-11 72.0 44 63.6
GWHGAZTO093215 Oryza alta HOM05M001776 ORTHO05M014198 3.7e-11 71.2 47 61.7
AET1Gv21019300 Aegilops tauschii HOM05M001776 ORTHO05M015075 6.2e-11 70.5 63 49.2
Misin07G199300 Miscanthus sinensis HOM05M001776 ORTHO05M010095 6.2e-11 70.5 42 64.3
MisinT020500 Miscanthus sinensis HOM05M001776 ORTHO05M010095 6.2e-11 70.5 42 64.3
TRITD1Bv1G223640 Triticum turgidum HOM05M001776 ORTHO05M010095 6.2e-11 70.5 45 62.2
OsKitaake08g000300 Oryza sativa Kitaake HOM05M001776 ORTHO05M010095 8.2e-11 70.1 45 62.2
OsR498G0815023200.01 Oryza sativa ssp. indica HOM05M001776 ORTHO05M010095 8.2e-11 70.1 45 62.2
Os08g0100400 Oryza sativa ssp. japonica HOM05M001776 ORTHO05M010095 8.2e-11 70.1 45 62.2
TraesCS1A03G1047100 Triticum aestivum HOM05M001776 ORTHO05M016497 1.1e-10 69.7 53 52.8
TraesCS1D03G1009400 Triticum aestivum HOM05M001776 ORTHO05M016497 1.1e-10 69.7 53 50.9
TRITD1Av1G225930 Triticum turgidum HOM05M001776 ORTHO05M016497 1.1e-10 69.7 53 52.8
TRITD1Bv1G223690 Triticum turgidum HOM05M001776 ORTHO05M016497 1.1e-10 69.7 53 52.8
AET1Gv21018800 Aegilops tauschii HOM05M001776 ORTHO05M016497 2.4e-10 68.6 53 50.9
GWHGASIY005496 Secale cereale HOM05M001776 ORTHO05M010095 2.4e-10 68.6 44 61.4
TraesCS1B03G1244900 Triticum aestivum HOM05M001776 ORTHO05M010095 2.4e-10 68.6 45 62.2
TraesCS1B03G1245400 Triticum aestivum HOM05M001776 ORTHO05M016497 2.4e-10 68.6 54 51.9
AET1Gv21019100 Aegilops tauschii HOM05M001776 ORTHO05M014198 3.1e-10 68.2 54 48.1
TraesCS1D03G1009900 Triticum aestivum HOM05M001776 ORTHO05M014198 3.1e-10 68.2 54 48.1
Horvu_MOREX_5H01G586400 Hordeum vulgare HOM05M001776 ORTHO05M010095 4.0e-10 67.8 49 57.1
TRIDC1BG072530 Triticum dicoccoides HOM05M001776 ORTHO05M014198 4.0e-10 67.8 54 48.1
TRITD1Bv1G223630 Triticum turgidum HOM05M001776 ORTHO05M010095 5.3e-10 67.4 46 58.7
V3.Lp_chr3_0G7638 Lolium perenne HOM05M001776 ORTHO05M014198 9.0e-10 66.6 50 54.0
DexiUA01G0012650 Digitaria exilis HOM05M001776 ORTHO05M010095 3.4e-09 64.7 36 69.4
TraesCS1B03G1245800 Triticum aestivum HOM05M001776 ORTHO05M014198 1.0e-08 63.2 45 51.1
TRITD1Bv1G223720 Triticum turgidum HOM05M001776 ORTHO05M014198 1.0e-08 63.2 45 51.1
Sspon.08G0008070-2B Saccharum spontaneum HOM05M001776 ORTHO05M005730 1.3e-08 62.8 54 53.7
Potri.010G014800 Populus trichocarpa HOM05M001082 ORTHO05M001480 1.9e-07 58.9 72 34.7
HPP92_016796 Vanilla planifolia HOM05M000503 ORTHO05M000399 5.5e-07 57.4 62 43.5
HPP92_016828 Vanilla planifolia HOM05M000503 ORTHO05M000399 5.5e-07 57.4 62 43.5
Potri.010G014950 Populus trichocarpa HOM05M001082 ORTHO05M001480 7.1e-07 57.0 73 37.0
CDE01G0338 Ceratophyllum demersum HOM05M000503 ORTHO05M000399 1.6e-06 55.8 51 39.2
Sspon.04G0009820-2B Saccharum spontaneum HOM05M000503 ORTHO05M000399 1.6e-06 55.8 51 45.1
SMO196G0282 Selaginella moellendorffii HOM05M000503 ORTHO05M000399 1.6e-06 55.8 64 35.9
Asa3G02722 Allium sativum HOM05M000503 ORTHO05M000399 2.1e-06 55.5 56 41.1
Potri.008G196400 Populus trichocarpa HOM05M001082 ORTHO05M001480 2.1e-06 55.5 73 37.0
Bradi3g46810 Brachypodium distachyon HOM05M000503 ORTHO05M000399 2.7e-06 55.1 51 45.1
Ot_Chr1_g02550 Oropetium thomaeum HOM05M000503 ORTHO05M000399 2.7e-06 55.1 51 45.1
p5.00_sc00049_p0007 Elaeis guineensis HOM05M000503 ORTHO05M000399 3.5e-06 54.7 64 42.2
p5.00_sc00149_p0010 Elaeis guineensis HOM05M000503 ORTHO05M000399 3.5e-06 54.7 62 41.9
Misin07G381600 Miscanthus sinensis HOM05M000503 ORTHO05M000399 3.5e-06 54.7 51 45.1
Misin08G177000 Miscanthus sinensis HOM05M000503 ORTHO05M000399 3.5e-06 54.7 51 45.1
Sobic.004G190700 Sorghum bicolor HOM05M000503 ORTHO05M000399 3.5e-06 54.7 51 45.1
HPP92_011248 Vanilla planifolia HOM05M000503 ORTHO05M000399 3.5e-06 54.7 62 41.9
Aco001107 Ananas comosus HOM05M000503 ORTHO05M000399 4.6e-06 54.3 63 41.3
Ma04_g10190 Musa acuminata HOM05M000503 ORTHO05M000399 4.6e-06 54.3 62 43.5
Ma06_g04350 Musa acuminata HOM05M000503 ORTHO05M000399 4.6e-06 54.3 118 33.1
Spipo0G0052700 Spirodela polyrhiza HOM05M000503 ORTHO05M000399 4.6e-06 54.3 67 41.8
Asa0G05001 Allium sativum HOM05M000503 ORTHO05M000399 6.1e-06 53.9 56 41.1
Asa3G03208 Allium sativum HOM05M000503 ORTHO05M000399 6.1e-06 53.9 68 38.2
Asa8G02870 Allium sativum HOM05M000503 ORTHO05M000399 6.1e-06 53.9 56 39.3
ATR0326G063 Amborella trichopoda HOM05M000503 ORTHO05M000399 6.1e-06 53.9 51 41.2
CALSI_Maker00029580 Calamus simplicifolius HOM05M000503 ORTHO05M000399 6.1e-06 53.9 68 39.7
CALSI_Maker00032468 Calamus simplicifolius HOM05M000503 ORTHO05M000399 6.1e-06 53.9 68 39.7
DDU034G0001 Dioscorea dumetorum HOM05M000503 ORTHO05M000399 6.1e-06 53.9 64 42.2
DDU049G0134 Dioscorea dumetorum HOM05M000503 ORTHO05M000399 6.1e-06 53.9 64 42.2
DDU344G0020 Dioscorea dumetorum HOM05M000503 ORTHO05M000399 6.1e-06 53.9 64 42.2
EJB05_21119 Eragrostis curvula HOM05M000503 ORTHO05M000399 6.1e-06 53.9 51 43.1
Glyma.10G013600 Glycine max HOM05M000503 ORTHO05M000399 6.1e-06 53.9 57 38.6
PH02Gene24997 Phyllostachys edulis HOM05M000503 ORTHO05M000399 6.1e-06 53.9 71 39.4
PH02Gene48340 Phyllostachys edulis HOM05M000503 ORTHO05M000399 6.1e-06 53.9 51 45.1
Zm00001eb183100 Zea mays B73 HOM05M000503 ORTHO05M000399 6.1e-06 53.9 51 45.1
Zm00007a00037631 Zea mays B104 HOM05M000503 ORTHO05M000399 6.1e-06 53.9 51 45.1
Aco004146 Ananas comosus HOM05M000503 ORTHO05M000399 7.9e-06 53.5 63 41.3
CALSI_Maker00023375 Calamus simplicifolius HOM05M000503 ORTHO05M000399 7.9e-06 53.5 65 40.0
GWHGAORA024133 Cenchrus purpureus HOM05M000503 ORTHO05M000399 7.9e-06 53.5 51 43.1
GWHGAORA059556 Cenchrus purpureus HOM05M000503 ORTHO05M000399 7.9e-06 53.5 51 43.1
GWHGAORA059572 Cenchrus purpureus HOM05M000503 ORTHO05M000399 7.9e-06 53.5 51 43.1
Misin10G152100 Miscanthus sinensis HOM05M000503 ORTHO05M000399 7.9e-06 53.5 51 43.1
GWHGAZTO070791 Oryza alta HOM05M000503 ORTHO05M000399 7.9e-06 53.5 45 51.1
Seita.1G207400 Setaria italica HOM05M000503 ORTHO05M000399 7.9e-06 53.5 51 43.1
Sevir.1G211100 Setaria viridis HOM05M000503 ORTHO05M000399 7.9e-06 53.5 51 43.1
Spipo2G0037700 Spirodela polyrhiza HOM05M000503 ORTHO05M000399 7.9e-06 53.5 62 43.5


User provided reference genes

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