Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_720 Physcomitrium patens HOM05M002505 ORTHO05M002704 1.2e-217 758.8 404 100.0
Pp3c20_727 Physcomitrium patens HOM05M002505 ORTHO05M002704 1.2e-217 758.8 404 100.0
Pp3c23_22490 Physcomitrium patens HOM05M002505 ORTHO05M002704 2.0e-167 592.0 407 72.0
SMO115G0197 Selaginella moellendorffii HOM05M002505 ORTHO05M002704 1.1e-77 293.9 399 41.9
Solyc02g150120.1 Solanum lycopersicum HOM05M002505 ORTHO05M002704 5.0e-70 268.5 405 39.8
Potri.005G087600 Populus trichocarpa HOM05M002505 ORTHO05M002704 1.4e-67 260.4 341 41.1
Potri.007G076300 Populus trichocarpa HOM05M002505 ORTHO05M002704 6.8e-67 258.1 394 37.8
Glyma.20G101700 Glycine max HOM05M002505 ORTHO05M002704 4.4e-66 255.4 402 38.3
ATR0789G152 Amborella trichopoda HOM05M002505 ORTHO05M002704 2.3e-62 243.0 405 38.8
CALSI_Maker00026391 Calamus simplicifolius HOM05M002505 ORTHO05M002704 1.6e-60 236.9 353 38.8
DDU314G0296 Dioscorea dumetorum HOM05M002505 ORTHO05M002704 6.1e-60 235.0 338 37.6
CDE05G3050 Ceratophyllum demersum HOM05M003701 ORTHO05M004784 1.0e-59 234.2 339 43.7
Glyma.10G287600 Glycine max HOM05M002505 ORTHO05M002704 3.0e-59 232.6 402 35.8
Asa6G05135 Allium sativum HOM05M002505 ORTHO05M002704 6.8e-59 231.5 396 36.6
AT5G08580 Arabidopsis thaliana HOM05M002505 ORTHO05M002704 3.4e-58 229.2 407 36.4
Zosma05g25470 Zostera marina HOM05M002505 ORTHO05M002704 4.4e-58 228.8 287 43.6
AagrBONN_evm.TU.Sc2ySwM_228.3643 Anthoceros agrestis HOM05M002505 ORTHO05M002704 5.7e-58 228.4 350 39.4
Ma06_g37680 Musa acuminata HOM05M002505 ORTHO05M002704 1.6e-55 220.3 343 40.2
Ma06_g07080 Musa acuminata HOM05M002505 ORTHO05M002704 7.8e-55 218.0 403 35.2
p5.00_sc00018_p0167 Elaeis guineensis HOM05M002505 ORTHO05M002704 6.6e-54 214.9 324 36.7
Ma08_g26790 Musa acuminata HOM05M002505 ORTHO05M002704 1.9e-53 213.4 397 35.5
Ma10_g00330 Musa acuminata HOM05M002505 ORTHO05M002704 1.9e-53 213.4 339 37.8
CDE05G1371 Ceratophyllum demersum HOM05M002505 ORTHO05M002704 2.8e-52 209.5 404 36.9
Bradi3g08370 Brachypodium distachyon HOM05M002505 ORTHO05M002704 4.0e-51 205.7 340 36.5
Spipo21G0026700 Spirodela polyrhiza HOM05M002505 ORTHO05M002704 8.9e-51 204.5 340 37.4
CALSI_Maker00025182 Calamus simplicifolius HOM05M002505 ORTHO05M002704 1.2e-50 204.1 357 37.3
V3.Lp_chr3_0G12618 Lolium perenne HOM05M002505 ORTHO05M002704 1.2e-50 204.1 342 35.1
PH02Gene45062 Phyllostachys edulis HOM05M002505 ORTHO05M002704 2.0e-50 203.4 342 35.4
Ot_Chr3_g23978 Oropetium thomaeum HOM05M002505 ORTHO05M002704 7.5e-50 201.4 410 35.1
Horvu_MOREX_6H01G262100 Hordeum vulgare HOM05M002505 ORTHO05M002704 1.7e-49 200.3 342 36.0
V3.Lp_chr6_0G7070 Lolium perenne HOM05M002505 ORTHO05M002704 8.3e-49 198.0 342 36.0
Potri.015G010300 Populus trichocarpa HOM05M002505 ORTHO05M002704 1.1e-48 197.6 279 38.4
AET6Gv20467200 Aegilops tauschii HOM05M002505 ORTHO05M002704 1.4e-48 197.2 280 39.3
TraesCS6D03G0392400 Triticum aestivum HOM05M002505 ORTHO05M002704 1.4e-48 197.2 280 39.3
Aco015213 Ananas comosus HOM05M002505 ORTHO05M002704 1.9e-48 196.8 398 36.2
GWHGASIY031814 Secale cereale HOM05M002505 ORTHO05M002704 1.9e-48 196.8 340 34.7
TRITD3Bv1G120080 Triticum turgidum HOM05M002563 ORTHO05M002853 3.2e-48 196.1 342 34.2
TRIDC3BG035360 Triticum dicoccoides HOM05M002505 ORTHO05M002704 4.1e-48 195.7 409 32.0
AET3Gv20510100 Aegilops tauschii HOM05M002505 ORTHO05M002704 5.4e-48 195.3 409 31.8
TraesCS3D03G0496700 Triticum aestivum HOM05M002505 ORTHO05M002704 5.4e-48 195.3 409 31.8
Aco005865 Ananas comosus HOM05M002505 ORTHO05M002704 1.2e-47 194.1 338 37.0
Ot_Chr1_g18934 Oropetium thomaeum HOM05M002505 ORTHO05M002704 4.6e-47 192.2 339 35.7
MBI01_g20331_MAGBIO Magnolia biondii HOM05M002505 ORTHO05M002704 6.0e-47 191.8 352 34.4
GWHGASIY014986 Secale cereale HOM05M002505 ORTHO05M002704 1.0e-46 191.0 409 31.8
Bradi2g41570 Brachypodium distachyon HOM05M002505 ORTHO05M002704 3.0e-46 189.5 342 34.8
GWHGAZTO055832 Oryza alta HOM05M002505 ORTHO05M002704 1.1e-45 187.6 340 34.7
GWHGAORA032624 Cenchrus purpureus HOM05M002563 ORTHO05M002853 1.9e-45 186.8 338 34.9
Seita.5G207300 Setaria italica HOM05M002505 ORTHO05M002704 2.5e-45 186.4 345 33.9
Sevir.5G208600 Setaria viridis HOM05M002505 ORTHO05M002704 2.5e-45 186.4 345 33.9
p5.00_sc00423_p0006 Elaeis guineensis HOM05M002505 ORTHO05M002704 5.6e-45 185.3 405 33.1
EJB05_16020 Eragrostis curvula HOM05M002505 ORTHO05M002704 7.3e-45 184.9 406 33.3
Pahal.5G272000 Panicum hallii HOM05M002505 ORTHO05M002704 9.5e-45 184.5 421 31.6
AT4G27790 Arabidopsis thaliana HOM05M002505 ORTHO05M002704 1.2e-44 184.1 287 37.6
TraesCS3B03G0615600 Triticum aestivum HOM05M002505 ORTHO05M002704 1.2e-44 184.1 414 31.2
OsR498G0101376000.01 Oryza sativa ssp. indica HOM05M002505 ORTHO05M002704 1.6e-44 183.7 342 33.9
TRIDC6AG027330 Triticum dicoccoides HOM05M002505 ORTHO05M002704 2.1e-44 183.3 280 37.5
TRITD3Av1G130080 Triticum turgidum HOM05M002563 ORTHO05M002853 2.1e-44 183.3 347 32.9
TraesCS3A03G0533200 Triticum aestivum HOM05M002505 ORTHO05M002704 3.6e-44 182.6 414 30.9
OsKitaake01g215800 Oryza sativa Kitaake HOM05M002505 ORTHO05M002704 4.7e-44 182.2 340 34.4
Sspon.03G0012840-1A Saccharum spontaneum HOM05M002505 ORTHO05M002704 4.7e-44 182.2 342 33.6
Sspon.03G0012840-2B Saccharum spontaneum HOM05M002505 ORTHO05M002704 4.7e-44 182.2 342 33.6
TRIDC3AG030810 Triticum dicoccoides HOM05M002505 ORTHO05M002704 4.7e-44 182.2 414 30.9
Misin05G170000 Miscanthus sinensis HOM05M002505 ORTHO05M002704 6.2e-44 181.8 340 34.4
Misin08G076400 Miscanthus sinensis HOM05M002505 ORTHO05M002704 6.2e-44 181.8 342 35.1
OB01G29960 Oryza brachyantha HOM05M002505 ORTHO05M002704 6.2e-44 181.8 427 32.6
Ma11_g07200 Musa acuminata HOM05M002505 ORTHO05M002704 8.1e-44 181.4 277 36.1
PH02Gene39674 Phyllostachys edulis HOM05M002505 ORTHO05M002704 1.1e-43 181.0 344 34.9
Misin06G169600 Miscanthus sinensis HOM05M002505 ORTHO05M002704 1.4e-43 180.6 340 34.4
TRITD6Av1G087270 Triticum turgidum HOM05M002505 ORTHO05M002704 1.4e-43 180.6 342 33.9
TraesCS6A03G0470300 Triticum aestivum HOM05M002505 ORTHO05M002704 5.2e-43 178.7 342 33.6
Horvu_MOREX_3H01G297000 Hordeum vulgare HOM05M002505 ORTHO05M002704 8.9e-43 177.9 407 31.2
Zm00007a00018772 Zea mays B104 HOM05M002505 ORTHO05M002704 8.9e-43 177.9 417 32.9
PH02Gene35209 Phyllostachys edulis HOM05M002505 ORTHO05M002704 1.2e-42 177.6 342 33.3
Misin07G095600 Miscanthus sinensis HOM05M002505 ORTHO05M002704 1.5e-42 177.2 339 34.8
Zm00001eb240010 Zea mays B73 HOM05M002505 ORTHO05M002704 7.5e-42 174.9 281 36.7
Sobic.004G095400 Sorghum bicolor HOM05M002505 ORTHO05M002704 9.9e-42 174.5 342 34.5
GWHGAZTO068953 Oryza alta HOM05M002505 ORTHO05M002704 2.9e-41 172.9 342 33.0
Sobic.003G194800 Sorghum bicolor HOM05M002505 ORTHO05M002704 6.4e-41 171.8 412 31.8
GWHGAORA015912 Cenchrus purpureus HOM05M002505 ORTHO05M002704 8.3e-41 171.4 282 35.8
MBI18_g16988_MAGBIO Magnolia biondii HOM05M002505 ORTHO05M002704 3.2e-40 169.5 284 35.6
evm.TU.AsparagusV1_01.910.V1.1 Asparagus officinalis HOM05M002505 ORTHO05M002704 5.4e-40 168.7 280 33.9
Seita.1G035100 Setaria italica HOM05M002505 ORTHO05M002704 1.2e-39 167.5 342 32.7
Sevir.1G035500 Setaria viridis HOM05M002505 ORTHO05M002704 1.2e-39 167.5 342 32.7
Pahal.1G091300 Panicum hallii HOM05M002505 ORTHO05M002704 1.6e-39 167.2 342 33.3
evm.TU.AsparagusV1_08.473.V1.1 Asparagus officinalis HOM05M002505 ORTHO05M002704 2.1e-39 166.8 225 39.6
GWHGAORA058916 Cenchrus purpureus HOM05M002505 ORTHO05M002704 2.7e-39 166.4 342 32.7
Glyma.14G159700 Glycine max HOM05M002505 ORTHO05M002704 3.5e-39 166.0 281 34.5
OsKitaake02g093600 Oryza sativa Kitaake HOM05M002505 ORTHO05M002704 1.7e-38 163.7 342 32.2
Os02g0221800 Oryza sativa ssp. japonica HOM05M002505 ORTHO05M002704 1.7e-38 163.7 342 32.2
GWHGAORA043723 Cenchrus purpureus HOM05M002563 ORTHO05M002853 2.3e-38 163.3 292 35.3
OsR498G0203237700.01 Oryza sativa ssp. indica HOM05M002505 ORTHO05M002704 3.9e-38 162.5 342 32.2
Sspon.03G0012840-3C Saccharum spontaneum HOM05M002505 ORTHO05M002704 3.3e-37 159.5 372 30.6
Sspon.04G0027400-3D Saccharum spontaneum HOM05M002505 ORTHO05M002704 2.1e-36 156.8 343 30.9
Glyma.19G067200 Glycine max HOM05M002505 ORTHO05M002704 6.2e-36 155.2 274 32.8
TRIDC6BG033460 Triticum dicoccoides HOM05M002505 ORTHO05M002704 4.0e-35 152.5 209 40.2
TraesCS6B03G0585200 Triticum aestivum HOM05M002505 ORTHO05M002704 2.0e-34 150.2 271 35.1
Dexi1A01G0009550 Digitaria exilis HOM05M002505 ORTHO05M002704 2.6e-34 149.8 341 31.4
GWHGAZTO046128 Oryza alta HOM05M002783 ORTHO05M003393 1.3e-33 147.5 287 33.4
OsKitaake04g312200 Oryza sativa Kitaake HOM05M002505 ORTHO05M002704 2.9e-33 146.4 283 33.2
Os04g0681500 Oryza sativa ssp. japonica HOM05M002505 ORTHO05M002704 2.9e-33 146.4 283 33.2
Dexi1B01G0009170 Digitaria exilis HOM05M002505 ORTHO05M002704 1.4e-32 144.1 338 29.9
p5.00_sc00001_p0074 Elaeis guineensis HOM05M002505 ORTHO05M002704 1.9e-32 143.7 272 37.5
OsR498G0409503100.01 Oryza sativa ssp. indica HOM05M002505 ORTHO05M002704 1.9e-32 143.7 283 32.9
EJB05_24897 Eragrostis curvula HOM05M002505 ORTHO05M002704 5.4e-32 142.1 341 31.1
Aco010288 Ananas comosus HOM05M002505 ORTHO05M002704 2.7e-31 139.8 285 33.0
Sspon.04G0027400-2C Saccharum spontaneum HOM05M002505 ORTHO05M002704 3.5e-31 139.4 338 31.4
GWHGAZTO017238 Oryza alta HOM05M002505 ORTHO05M002704 6.6e-30 135.2 447 26.0
Zm00007a00016232 Zea mays B104 HOM05M002505 ORTHO05M002704 1.8e-27 127.1 338 31.7
Asa0G02974 Allium sativum HOM05M002505 ORTHO05M002704 2.0e-26 123.6 221 33.5
TRITD6Bv1G094870 Triticum turgidum HOM05M002505 ORTHO05M002704 2.6e-26 123.2 207 35.7
Zm00001eb357210 Zea mays B73 HOM05M002505 ORTHO05M002704 1.4e-24 117.5 281 33.5
GWHGAZTO003473 Oryza alta HOM05M002505 ORTHO05M002704 2.7e-23 113.2 198 36.9
HPP92_022906 Vanilla planifolia HOM05M002505 ORTHO05M002704 7.8e-23 111.7 245 35.9
Zjn_sc00045.1.g00500.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002505 ORTHO05M002704 1.7e-22 110.5 325 27.7
Zm00001eb433930 Zea mays B73 HOM05M002505 ORTHO05M002704 5.1e-22 109.0 294 28.2
Seita.3G012700 Setaria italica HOM05M002505 ORTHO05M002704 6.6e-22 108.6 262 29.0
Sevir.3G014000 Setaria viridis HOM05M002505 ORTHO05M002704 6.6e-22 108.6 262 29.0
GWHGAORA020743 Cenchrus purpureus HOM05M002505 ORTHO05M002704 1.1e-21 107.8 295 28.1
Misin11G265500 Miscanthus sinensis HOM05M002505 ORTHO05M002704 1.5e-21 107.5 282 28.7
GWHGAORA063647 Cenchrus purpureus HOM05M002505 ORTHO05M002704 1.1e-19 101.3 273 28.2
OB02G18070 Oryza brachyantha HOM05M002505 ORTHO05M002704 1.4e-19 100.9 187 33.2
SEGI_37326 Sequoiadendron giganteum HOM05M002505 ORTHO05M002704 1.2e-18 97.8 138 41.3
GWHGAZTO032162 Oryza alta HOM05M002505 ORTHO05M002704 7.6e-18 95.1 144 34.0
Sobic.006G270800 Sorghum bicolor HOM05M002505 ORTHO05M002704 1.7e-17 94.0 279 26.5
PRCOL_00000594 Prasinoderma coloniale HOM05M002505 ORTHO05M002704 6.4e-17 92.0 278 28.1
Zjn_sc00021.1.g01600.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002505 ORTHO05M002704 2.1e-15 87.0 140 37.9
GWHGAORA043744 Cenchrus purpureus HOM05M002563 ORTHO05M002853 4.6e-15 85.9 230 28.7
GWHGAORA063675 Cenchrus purpureus HOM05M002505 ORTHO05M002704 1.1e-13 81.3 284 25.7
PH02Gene46120 Phyllostachys edulis HOM05M002505 ORTHO05M002704 1.1e-13 81.3 186 30.6
Dexi5A01G0017880 Digitaria exilis HOM05M002505 ORTHO05M002704 7.4e-13 78.6 184 31.5
Dexi5B01G0018250 Digitaria exilis HOM05M002505 ORTHO05M002704 7.4e-13 78.6 184 31.5
ATR0680G244 Amborella trichopoda HOM05M002505 ORTHO05M002704 6.2e-12 75.5 90 37.8
Sspon.04G0027400-1B Saccharum spontaneum HOM05M002505 ORTHO05M002704 2.4e-11 73.6 147 31.3
HPP92_022907 Vanilla planifolia HOM05M002505 ORTHO05M002704 2.4e-11 73.6 91 40.7
Solyc06g052040.4 Solanum lycopersicum HOM05M002505 ORTHO05M002704 6.9e-11 72.0 84 41.7
GWHGAZTO095889 Oryza alta HOM05M002505 ORTHO05M002704 9.0e-11 71.6 132 32.6
PH02Gene23690 Phyllostachys edulis HOM05M002505 ORTHO05M002704 3.4e-10 69.7 312 23.4
PH02Gene50944 Phyllostachys edulis HOM05M002505 ORTHO05M002704 3.4e-10 69.7 312 23.4
p5.00_sc00039_p0143 Elaeis guineensis HOM05M002505 ORTHO05M002704 1.3e-09 67.8 109 39.4
SEGI_38207 Sequoiadendron giganteum HOM05M002505 ORTHO05M002704 3.5e-07 59.7 56 50.0
Pp3c2_5420 Physcomitrium patens HOM05M030842 ORTHO05M221238 1.0e-06 58.2 27 96.3


User provided reference genes

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