Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_19960 Physcomitrium patens HOM05M004128 ORTHO05M004948 6.7e-36 152.5 68 100.0
Pp3c24_89 Physcomitrium patens HOM05M004128 ORTHO05M004948 3.8e-23 110.2 65 73.8
Pp3c19_1061 Physcomitrium patens HOM05M039774 ORTHO05M004948 4.1e-17 90.1 45 82.2
Pp3c19_1062 Physcomitrium patens HOM05M004128 ORTHO05M004948 1.2e-16 88.6 44 81.8
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05M004128 ORTHO05M004948 4.7e-13 76.6 48 64.6
Spipo2G0109100 Spirodela polyrhiza HOM05M004128 ORTHO05M004948 4.7e-13 76.6 70 45.7
Pahal.3G483200 Panicum hallii HOM05M004128 ORTHO05M004948 4.0e-12 73.6 61 54.1
Potri.005G150300 Populus trichocarpa HOM05M004128 ORTHO05M004948 5.2e-12 73.2 46 60.9
CDE06G1347 Ceratophyllum demersum HOM05M004128 ORTHO05M004948 1.5e-11 71.6 46 58.7
Mapoly0026s0006 Marchantia polymorpha HOM05M004128 ORTHO05M004948 1.5e-11 71.6 48 58.3
Zosma06g21130 Zostera marina HOM05M004128 ORTHO05M004948 1.5e-11 71.6 45 64.4
GWHGAORA014416 Cenchrus purpureus HOM05M004128 ORTHO05M004948 2.0e-11 71.2 46 67.4
GWHGAORA034865 Cenchrus purpureus HOM05M004128 ORTHO05M004948 4.4e-11 70.1 46 65.2
Misin14G144100 Miscanthus sinensis HOM05M004128 ORTHO05M004948 4.4e-11 70.1 61 50.8
Sspon.02G0030370-1A Saccharum spontaneum HOM05M004128 ORTHO05M004948 4.4e-11 70.1 59 52.5
Sspon.02G0030370-1P Saccharum spontaneum HOM05M004128 ORTHO05M004948 4.4e-11 70.1 59 52.5
Sspon.02G0030370-2C Saccharum spontaneum HOM05M004128 ORTHO05M004948 4.4e-11 70.1 59 52.5
Zm00001eb052110 Zea mays B73 HOM05M004128 ORTHO05M004948 4.4e-11 70.1 64 46.9
Bradi4g02842 Brachypodium distachyon HOM05M004128 ORTHO05M004948 5.8e-11 69.7 61 50.8
Dexi3A01G0034130 Digitaria exilis HOM05M004128 ORTHO05M004948 5.8e-11 69.7 61 52.5
Ma02_g19000 Musa acuminata HOM05M004128 ORTHO05M004948 5.8e-11 69.7 47 55.3
TraesCS4A03G0742900 Triticum aestivum HOM05M004128 ORTHO05M004948 5.8e-11 69.7 65 43.1
TRIDC4AG044910 Triticum dicoccoides HOM05M004128 ORTHO05M004948 5.8e-11 69.7 65 43.1
TRITD4Av1G200490 Triticum turgidum HOM05M004128 ORTHO05M004948 5.8e-11 69.7 65 43.1
CDE04G0885 Ceratophyllum demersum HOM05M004128 ORTHO05M004948 7.5e-11 69.3 50 52.0
Seita.3G374300 Setaria italica HOM05M004128 ORTHO05M004948 7.5e-11 69.3 46 65.2
Sevir.3G391400 Setaria viridis HOM05M004128 ORTHO05M004948 7.5e-11 69.3 46 65.2
Os12g0596101 Oryza sativa ssp. japonica HOM05M004128 ORTHO05M004948 9.8e-11 68.9 61 50.8
Zm00001eb135300 Zea mays B73 HOM05M004128 ORTHO05M004948 9.8e-11 68.9 45 68.9
Zm00007a00038318 Zea mays B104 HOM05M004128 ORTHO05M004948 9.8e-11 68.9 64 46.9
Zm00007a00051337 Zea mays B104 HOM05M004128 ORTHO05M004948 9.8e-11 68.9 45 68.9
Dexi3B01G0035830 Digitaria exilis HOM05M004128 ORTHO05M004948 1.3e-10 68.6 61 54.1
Sobic.008G151900 Sorghum bicolor HOM05M004128 ORTHO05M004948 1.3e-10 68.6 46 65.2
Os03g0673700 Oryza sativa ssp. japonica HOM05M004128 ORTHO05M004948 1.7e-10 68.2 64 46.9
GWHGASIY018024 Secale cereale HOM05M004128 ORTHO05M004948 1.7e-10 68.2 65 41.5
OsKitaake12g198900 Oryza sativa Kitaake HOM05M004128 ORTHO05M004948 2.2e-10 67.8 46 63.0
GWHGASIY018027 Secale cereale HOM05M004128 ORTHO05M004948 2.2e-10 67.8 64 43.8
GWHGAORA051453 Cenchrus purpureus HOM05M004128 ORTHO05M004948 3.7e-10 67.0 66 43.9
EJB05_05238 Eragrostis curvula HOM05M004128 ORTHO05M004948 4.9e-10 66.6 65 43.1
OsKitaake03g286550 Oryza sativa Kitaake HOM05M004128 ORTHO05M004948 4.9e-10 66.6 45 55.6
GWHGASIY024562 Secale cereale HOM05M004128 ORTHO05M004948 6.4e-10 66.2 46 60.9
TraesCS5D03G0179000 Triticum aestivum HOM05M004128 ORTHO05M004948 6.4e-10 66.2 46 60.9
TRIDC5BG011380 Triticum dicoccoides HOM05M004128 ORTHO05M004948 6.4e-10 66.2 46 60.9
TRITD5Av1G030590 Triticum turgidum HOM05M000015 ORTHO05M002298 6.4e-10 66.2 46 60.9
TRITD5Bv1G029880 Triticum turgidum HOM05M000015 ORTHO05M002298 6.4e-10 66.2 46 60.9
Asa7G01839 Allium sativum HOM05M004128 ORTHO05M004948 8.3e-10 65.9 49 55.1
Aco004981 Ananas comosus HOM05M004128 ORTHO05M004948 8.3e-10 65.9 67 40.3
Glyma.16G143900 Glycine max HOM05M004128 ORTHO05M004948 8.3e-10 65.9 48 50.0
EJB05_05228 Eragrostis curvula HOM05M004128 ORTHO05M004948 1.1e-09 65.5 67 40.3
V3.Lp_chr4_0G8230 Lolium perenne HOM05M004128 ORTHO05M004948 1.1e-09 65.5 45 53.3
Ot_Chr4_g08218 Oropetium thomaeum HOM05M004128 ORTHO05M004948 1.1e-09 65.5 63 42.9
CALSI_Maker00017960 Calamus simplicifolius HOM05M004128 ORTHO05M004948 1.4e-09 65.1 48 56.2
CALSI_Maker00025618 Calamus simplicifolius HOM05M004128 ORTHO05M004948 1.4e-09 65.1 48 56.2
OB03G36620 Oryza brachyantha HOM05M004128 ORTHO05M004948 1.4e-09 65.1 67 46.3
Seita.9G142200 Setaria italica HOM05M004128 ORTHO05M004948 1.4e-09 65.1 65 41.5
Sevir.9G140500 Setaria viridis HOM05M004128 ORTHO05M004948 1.4e-09 65.1 65 41.5
Bradi1g12673 Brachypodium distachyon HOM05M004128 ORTHO05M004948 1.9e-09 64.7 59 42.4
GWHGAORA019152 Cenchrus purpureus HOM05M004128 ORTHO05M004948 1.9e-09 64.7 66 42.4
EJB05_00643 Eragrostis curvula HOM05M004128 ORTHO05M004948 1.9e-09 64.7 60 48.3
Ot_Chr10_gn30485 Oropetium thomaeum HOM05M004128 ORTHO05M004948 1.9e-09 64.7 46 56.5
OB12G24470 Oryza brachyantha HOM05M004128 ORTHO05M004948 1.9e-09 64.7 59 47.5
AET4Gv20033200 Aegilops tauschii HOM05M004128 ORTHO05M004948 2.4e-09 64.3 65 43.1
Dexi9A01G0013660 Digitaria exilis HOM05M004128 ORTHO05M004948 2.4e-09 64.3 63 42.9
Pahal.9G137800 Panicum hallii HOM05M004128 ORTHO05M004948 2.4e-09 64.3 63 42.9
Solyc02g090080.1 Solanum lycopersicum HOM05M004128 ORTHO05M004948 2.4e-09 64.3 49 53.1
TraesCS4D03G0031500 Triticum aestivum HOM05M004128 ORTHO05M004948 2.4e-09 64.3 65 43.1
Zjn_sc00014.1.g00070.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M004128 ORTHO05M004948 2.4e-09 64.3 64 43.8
Zjn_sc00038.1.g03570.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M004128 ORTHO05M004948 2.4e-09 64.3 46 60.9
Glyma.02G061500 Glycine max HOM05M004128 ORTHO05M004948 3.2e-09 63.9 48 50.0
V3.Lp_chr6_0G12540 Lolium perenne HOM05M004128 ORTHO05M004948 3.2e-09 63.9 45 53.3
MBI16_g05020_MAGBIO Magnolia biondii HOM05M004128 ORTHO05M004948 3.2e-09 63.9 67 44.8
Sspon.01G0025270-1A Saccharum spontaneum HOM05M004128 ORTHO05M004948 3.2e-09 63.9 62 46.8
GWHGASIY018030 Secale cereale HOM05M004128 ORTHO05M004948 3.2e-09 63.9 64 39.1
Zjn_sc00013.1.g00140.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M004128 ORTHO05M004948 3.2e-09 63.9 64 42.2
Horvu_MOREX_4H01G021600 Hordeum vulgare HOM05M004128 ORTHO05M004948 4.1e-09 63.5 68 41.2
MBI16_g05021_MAGBIO Magnolia biondii HOM05M004128 ORTHO05M004948 4.1e-09 63.5 47 48.9
Potri.005G130750 Populus trichocarpa HOM05M004128 ORTHO05M004948 4.1e-09 63.5 49 57.1
TraesCS4B03G0050100 Triticum aestivum HOM05M004128 ORTHO05M004948 4.1e-09 63.5 67 41.8
TRIDC4BG004070 Triticum dicoccoides HOM05M004128 ORTHO05M004948 4.1e-09 63.5 67 41.8
TRITD4Bv1G006500 Triticum turgidum HOM05M004128 ORTHO05M004948 4.1e-09 63.5 67 41.8
OsKitaake03g286200 Oryza sativa Kitaake HOM05M004128 ORTHO05M004948 5.4e-09 63.2 45 53.3
OsR498G0306772900.01 Oryza sativa ssp. indica HOM05M004128 ORTHO05M004948 5.4e-09 63.2 45 53.3
Os03g0673400 Oryza sativa ssp. japonica HOM05M004128 ORTHO05M004948 5.4e-09 63.2 45 53.3
Dexi9A01G0013650 Digitaria exilis HOM05M004128 ORTHO05M004948 9.2e-09 62.4 45 51.1
Pahal.9G137700 Panicum hallii HOM05M004128 ORTHO05M004948 9.2e-09 62.4 45 51.1
CBR_g28808 Chara braunii HOM05M004128 ORTHO05M004948 1.2e-08 62.0 44 50.0
Dexi9B01G0014970 Digitaria exilis HOM05M004128 ORTHO05M004948 1.2e-08 62.0 63 41.3
Potri.007G034000 Populus trichocarpa HOM05M004128 ORTHO05M004948 1.2e-08 62.0 64 46.9
Zm00007a00038317 Zea mays B104 HOM05M004128 ORTHO05M004948 1.2e-08 62.0 45 51.1
EJB05_05239 Eragrostis curvula HOM05M004128 ORTHO05M004948 1.6e-08 61.6 66 40.9
EJB05_05240 Eragrostis curvula HOM05M004128 ORTHO05M004948 2.0e-08 61.2 45 48.9
Misin02G127600 Miscanthus sinensis HOM05M004128 ORTHO05M004948 2.0e-08 61.2 45 51.1
Glyma.19G074100 Glycine max HOM05M004128 ORTHO05M004948 6.0e-08 59.7 48 45.8
DDU693G0566 Dioscorea dumetorum HOM05M000969 ORTHO05M000840 6.6e-07 56.2 43 51.2
DDU763G0002 Dioscorea dumetorum HOM05M000969 ORTHO05M000840 6.6e-07 56.2 43 51.2
DDU765G0014 Dioscorea dumetorum HOM05M000969 ORTHO05M000840 6.6e-07 56.2 43 51.2
Glyma.11G061100 Glycine max HOM05M004128 ORTHO05M004948 1.1e-06 55.5 45 51.1


User provided reference genes

Program Settings