Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0677425 Oryza sativa ssp. japonica HOM05M004935 ORTHO05M005789 2.9e-117 424.5 211 100.0
Os11g0677500 Oryza sativa ssp. japonica HOM05M004935 ORTHO05M005789 2.6e-78 295.0 176 84.7
GWHGAZTO013119 Oryza alta HOM05M004935 ORTHO05M005789 7.4e-65 250.4 147 85.0
GWHGAZTO065099 Oryza alta HOM05M004935 ORTHO05M005789 7.4e-65 250.4 147 86.4
OsKitaake11g231500 Oryza sativa Kitaake HOM05M004935 ORTHO05M005789 1.4e-63 246.1 147 84.4
OsR498G1120717200.01 Oryza sativa ssp. indica HOM05M004935 ORTHO05M005789 1.4e-63 246.1 147 84.4
OB11G27060 Oryza brachyantha HOM05M004935 ORTHO05M005789 6.7e-50 200.7 147 72.1
PH02Gene42174 Phyllostachys edulis HOM05M004935 ORTHO05M005789 2.9e-45 185.3 163 61.3
EJB05_25863 Eragrostis curvula HOM05M004935 ORTHO05M005789 6.7e-42 174.1 148 63.5
Bradi4g09997 Brachypodium distachyon HOM05M004935 ORTHO05M005789 1.1e-39 166.8 143 64.3
Seita.4G257300 Setaria italica HOM05M004935 ORTHO05M005789 4.1e-39 164.9 161 58.4
Sevir.4G269200 Setaria viridis HOM05M004935 ORTHO05M005789 9.1e-39 163.7 161 58.4
Sspon.02G0000640-1A Saccharum spontaneum HOM05M004935 ORTHO05M005789 9.4e-36 153.7 148 56.1
Sspon.02G0000640-1P Saccharum spontaneum HOM05M004935 ORTHO05M005789 9.4e-36 153.7 148 56.1
Sspon.02G0000640-2C Saccharum spontaneum HOM05M004935 ORTHO05M005789 9.4e-36 153.7 148 56.1
Sspon.02G0000640-3D Saccharum spontaneum HOM05M004935 ORTHO05M005789 9.4e-36 153.7 148 56.1
Pahal.4G038900 Panicum hallii HOM05M004935 ORTHO05M005789 1.2e-35 153.3 143 61.5
Sobic.002G425700 Sorghum bicolor HOM05M004935 ORTHO05M005789 2.7e-35 152.1 163 53.4
V3.Lp_chr4_0G13798 Lolium perenne HOM05M004935 ORTHO05M005789 6.1e-35 151.0 163 54.0
Misin03G368200 Miscanthus sinensis HOM05M004935 ORTHO05M005789 8.0e-35 150.6 148 55.4
GWHGAORA029057 Cenchrus purpureus HOM05M004935 ORTHO05M005789 1.8e-34 149.4 163 52.8
PH02Gene16748 Phyllostachys edulis HOM05M004935 ORTHO05M005789 8.8e-34 147.1 153 56.2
Horvu_MOREX_4H01G200100 Hordeum vulgare HOM05M004935 ORTHO05M005789 1.5e-33 146.4 173 48.6
GWHGAORA057411 Cenchrus purpureus HOM05M004935 ORTHO05M005789 3.3e-33 145.2 161 53.4
TraesCS4A03G0468500 Triticum aestivum HOM05M004935 ORTHO05M005789 3.3e-33 145.2 163 51.5
TRIDC4AG027560 Triticum dicoccoides HOM05M004935 ORTHO05M005789 3.3e-33 145.2 163 51.5
TRITD4Av1G134610 Triticum turgidum HOM05M004935 ORTHO05M005789 3.3e-33 145.2 163 51.5
Ot_Chr6_g24287 Oropetium thomaeum HOM05M004935 ORTHO05M005789 7.4e-33 144.1 172 47.1
TraesCS4B03G0300200 Triticum aestivum HOM05M004935 ORTHO05M005789 1.3e-32 143.3 163 50.9
Zm00007a00024529 Zea mays B104 HOM05M004935 ORTHO05M005789 1.7e-32 142.9 164 50.0
TRIDC4BG020050 Triticum dicoccoides HOM05M004935 ORTHO05M005789 2.2e-32 142.5 143 56.6
AET4Gv20307700 Aegilops tauschii HOM05M004935 ORTHO05M005789 1.4e-31 139.8 163 50.9
TraesCS4D03G0293100 Triticum aestivum HOM05M004935 ORTHO05M005789 1.4e-31 139.8 163 50.9
GWHGASIY019832 Secale cereale HOM05M004935 ORTHO05M005789 5.9e-30 134.4 163 50.3
Zjn_sc00094.1.g01190.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004935 ORTHO05M005789 3.1e-23 112.1 143 51.0
p5.00_sc00025_p0101 Elaeis guineensis HOM05M004935 ORTHO05M005789 1.1e-12 77.0 164 30.5
CALSI_Maker00021502 Calamus simplicifolius HOM05M004935 ORTHO05M005789 1.5e-12 76.6 155 31.0
CALSI_Maker00048877 Calamus simplicifolius HOM05M004935 ORTHO05M005789 1.5e-12 76.6 155 31.0
Aco013706 Ananas comosus HOM05M004935 ORTHO05M005789 5.5e-12 74.7 147 34.0
Potri.002G194100 Populus trichocarpa HOM05M004935 ORTHO05M005789 8.0e-11 70.9 149 33.6
Ma02_g16160 Musa acuminata HOM05M004935 ORTHO05M005789 6.8e-10 67.8 147 31.3
DDU272G0352 Dioscorea dumetorum HOM05M004935 ORTHO05M005789 2.0e-09 66.2 95 40.0
MBI19_g03239_MAGBIO Magnolia biondii HOM05M004935 ORTHO05M005789 1.7e-08 63.2 122 34.4
Glyma.15G216400 Glycine max HOM05M004935 ORTHO05M005789 1.1e-07 60.5 157 29.3
Ma02_g03130 Musa acuminata HOM05M004935 ORTHO05M005789 1.1e-07 60.5 148 28.4
AT2G47300 Arabidopsis thaliana HOM05M004935 ORTHO05M005789 1.4e-07 60.1 44 63.6
Glyma.16G071100 Glycine max HOM05M004935 ORTHO05M005789 1.4e-07 60.1 157 28.7
evm.TU.AsparagusV1_08.3204.V1.1 Asparagus officinalis HOM05M004935 ORTHO05M005789 7.0e-07 57.8 36 63.9
Asa3G02826 Allium sativum HOM05M004935 ORTHO05M005789 9.2e-07 57.4 33 69.7
CDE11G1215 Ceratophyllum demersum HOM05M004935 ORTHO05M005789 2.0e-06 56.2 33 72.7
HPP92_010605 Vanilla planifolia HOM05M004935 ORTHO05M005789 2.0e-06 56.2 37 70.3


User provided reference genes

Program Settings