Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g231300 Oryza sativa Kitaake HOM05M003922 ORTHO05M004332 1.1e-150 536.6 456 100.0
Os11g0677400 Oryza sativa ssp. japonica HOM05M003922 ORTHO05M004332 1.1e-150 536.6 456 100.0
OsR498G1120716000.01 Oryza sativa ssp. indica HOM05M003922 ORTHO05M004332 4.8e-146 521.2 456 98.5
GWHGAZTO013118 Oryza alta HOM05M003922 ORTHO05M004332 5.4e-89 331.6 513 65.3
OB11G27050 Oryza brachyantha HOM05M003922 ORTHO05M004332 1.2e-72 277.3 176 77.3
GWHGAZTO065098 Oryza alta HOM05M003922 ORTHO05M004332 2.1e-72 276.6 480 67.5
PH02Gene16747 Phyllostachys edulis HOM05M003922 ORTHO05M004332 9.4e-49 198.0 154 62.3
PH02Gene35600 Phyllostachys edulis HOM05M003922 ORTHO05M004332 2.1e-48 196.8 154 63.0
Zjn_sc00096.1.g00400.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M003922 ORTHO05M004332 1.4e-36 157.5 153 55.6
MisinT229700 Miscanthus sinensis HOM05M003922 ORTHO05M004332 2.2e-34 150.2 162 47.5
GWHGASIY019595 Secale cereale HOM05M003922 ORTHO05M004332 2.9e-34 149.8 161 48.4
Misin10G175400 Miscanthus sinensis HOM05M003922 ORTHO05M004332 3.8e-34 149.4 162 48.1
Sobic.005G212900 Sorghum bicolor HOM05M003922 ORTHO05M004332 2.5e-33 146.7 171 47.4
Zm00007a00023975 Zea mays B104 HOM05M003922 ORTHO05M004332 2.5e-33 146.7 162 47.5
Sspon.06G0018550-2C Saccharum spontaneum HOM05M003922 ORTHO05M004332 3.2e-33 146.4 162 46.9
Seita.8G232400 Setaria italica HOM05M003922 ORTHO05M004332 9.4e-33 144.8 163 49.7
Sevir.8G242600 Setaria viridis HOM05M003922 ORTHO05M004332 9.4e-33 144.8 163 49.7
TRIDC4BG019970 Triticum dicoccoides HOM05M003922 ORTHO05M004332 1.2e-32 144.4 161 47.2
TraesCS4B03G0299600 Triticum aestivum HOM05M003922 ORTHO05M004332 3.6e-32 142.9 161 46.6
TraesCS4A03G0467100 Triticum aestivum HOM05M003922 ORTHO05M004332 4.7e-32 142.5 161 46.6
TRIDC4AG027440 Triticum dicoccoides HOM05M003922 ORTHO05M004332 4.7e-32 142.5 161 46.6
TRITD4Av1G132090 Triticum turgidum HOM05M003922 ORTHO05M004332 4.7e-32 142.5 161 46.6
Dexi8A01G0017640 Digitaria exilis HOM05M003922 ORTHO05M004332 8.0e-32 141.7 161 48.4
GWHGAORA000599 Cenchrus purpureus HOM05M003922 ORTHO05M004332 1.0e-31 141.4 167 47.3
Bradi4g10008 Brachypodium distachyon HOM05M003922 ORTHO05M004332 1.8e-31 140.6 156 44.9
Sspon.02G0043860-2C Saccharum spontaneum HOM05M003922 ORTHO05M004332 1.3e-29 134.4 151 49.0
Misin15G135100 Miscanthus sinensis HOM05M003922 ORTHO05M004332 3.7e-29 132.9 151 49.0
Ot_Chr10_g21863 Oropetium thomaeum HOM05M003922 ORTHO05M004332 3.7e-29 132.9 154 48.1
Sspon.02G0043860-1P Saccharum spontaneum HOM05M003922 ORTHO05M004332 3.7e-29 132.9 151 48.3
Zm00001eb028480 Zea mays B73 HOM05M003922 ORTHO05M004332 8.3e-29 131.7 151 48.3
Zm00007a00010646 Zea mays B104 HOM05M003922 ORTHO05M004332 8.3e-29 131.7 151 48.3
Sspon.06G0018550-1A Saccharum spontaneum HOM05M003922 ORTHO05M004332 1.8e-28 130.6 133 48.9
Sobic.008G129800 Sorghum bicolor HOM05M003922 ORTHO05M004332 3.1e-28 129.8 151 48.3
Pahal.3G461300 Panicum hallii HOM05M003922 ORTHO05M004332 4.1e-28 129.4 154 49.4
GWHGAORA014120 Cenchrus purpureus HOM05M003922 ORTHO05M004332 9.1e-28 128.3 151 45.7
GWHGASIY024875 Secale cereale HOM05M003922 ORTHO05M004332 1.2e-27 127.9 149 45.6
Horvu_MOREX_5H01G143500 Hordeum vulgare HOM05M003922 ORTHO05M004332 2.0e-27 127.1 149 45.6
Zm00001eb136950 Zea mays B73 HOM05M003922 ORTHO05M004332 4.5e-27 125.9 151 47.0
Zm00007a00005319 Zea mays B104 HOM05M003922 ORTHO05M004332 4.5e-27 125.9 151 47.0
Sevir.3G349500 Setaria viridis HOM05M003922 ORTHO05M004332 1.7e-26 124.0 151 47.0
Seita.3G335100 Setaria italica HOM05M003922 ORTHO05M004332 2.3e-26 123.6 151 47.0
Misin14G126700 Miscanthus sinensis HOM05M003922 ORTHO05M004332 3.8e-26 122.9 151 47.0
OsKitaake12g176901 Oryza sativa Kitaake HOM05M003922 ORTHO05M004332 5.0e-26 122.5 165 44.8
Os12g0561500 Oryza sativa ssp. japonica HOM05M003922 ORTHO05M004332 5.0e-26 122.5 165 44.8
EJB05_25864 Eragrostis curvula HOM05M003922 ORTHO05M004332 1.1e-25 121.3 144 49.3
Zjn_sc00038.1.g02120.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M003922 ORTHO05M004332 1.1e-25 121.3 153 45.8
GWHGAZTO067359 Oryza alta HOM05M003922 ORTHO05M004332 1.5e-25 120.9 149 47.7
PH02Gene12377 Phyllostachys edulis HOM05M003922 ORTHO05M004332 3.2e-25 119.8 140 46.4
AET5Gv20241200 Aegilops tauschii HOM05M003922 ORTHO05M004332 4.2e-25 119.4 149 43.6
TraesCS5D03G0237400 Triticum aestivum HOM05M003922 ORTHO05M004332 4.2e-25 119.4 149 43.6
Bradi4g04680 Brachypodium distachyon HOM05M003922 ORTHO05M004332 1.4e-23 114.4 149 43.0
PH02Gene07394 Phyllostachys edulis HOM05M003922 ORTHO05M004332 3.0e-23 113.2 132 46.2
V3.Lp_chr5_0G4184 Lolium perenne HOM05M003922 ORTHO05M004332 5.7e-22 109.0 149 41.6
TRITD5Bv1G044150 Triticum turgidum HOM05M003922 ORTHO05M004332 7.5e-22 108.6 149 40.3
TraesCS5A03G0222800 Triticum aestivum HOM05M003922 ORTHO05M004332 1.3e-21 107.8 149 40.3
TRITD5Av1G047250 Triticum turgidum HOM05M003922 ORTHO05M004332 1.3e-21 107.8 149 40.3
OB12G22660 Oryza brachyantha HOM05M003922 ORTHO05M004332 2.8e-21 106.7 135 43.7
Pahal.8G259100 Panicum hallii HOM05M003922 ORTHO05M004332 4.9e-21 105.9 163 40.5
Zjn_sc00128.1.g00470.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003922 ORTHO05M004332 7.0e-20 102.1 149 40.3
Sspon.02G0043860-1B Saccharum spontaneum HOM05M003428 ORTHO05M004040 3.5e-19 99.8 117 47.0
Aco013708 Ananas comosus HOM05M003922 ORTHO05M004332 4.5e-19 99.4 149 40.9
Ma08_g06240 Musa acuminata HOM05M003922 ORTHO05M004332 8.6e-18 95.1 151 39.7
PH02Gene42175 Phyllostachys edulis HOM05M003922 ORTHO05M004332 1.1e-17 94.7 96 53.1
Spipo6G0050200 Spirodela polyrhiza HOM05M003922 ORTHO05M004332 1.1e-17 94.7 181 35.9
CDE02G2547 Ceratophyllum demersum HOM05M003922 ORTHO05M004332 2.0e-14 84.0 176 35.2
GWHGAZTO015454 Oryza alta HOM05M003922 ORTHO05M004332 2.6e-14 83.6 75 58.7
p5.00_sc00009_p0101 Elaeis guineensis HOM05M003922 ORTHO05M004332 3.4e-14 83.2 148 37.2
AT3G36659 Arabidopsis thaliana HOM05M003922 ORTHO05M004332 9.8e-14 81.6 173 34.7
Ma05_g29520 Musa acuminata HOM05M003922 ORTHO05M004332 1.3e-13 81.3 172 32.6
OB12G22650 Oryza brachyantha HOM05M003922 ORTHO05M004332 1.3e-13 81.3 100 42.0
MBI19_g03227_MAGBIO Magnolia biondii HOM05M003922 ORTHO05M004332 2.2e-13 80.5 151 35.1
Potri.014G119200 Populus trichocarpa HOM05M014660 ORTHO05M004332 3.7e-13 79.7 153 34.0
HPP92_027565 Vanilla planifolia HOM05M003922 ORTHO05M004332 3.2e-12 76.6 152 35.5
Ma10_g02990 Musa acuminata HOM05M003922 ORTHO05M005504 4.1e-12 76.3 161 26.7
EJB05_01087 Eragrostis curvula HOM05M003922 ORTHO05M004332 1.6e-11 74.3 116 39.7
HPP92_017245 Vanilla planifolia HOM05M003922 ORTHO05M004332 1.6e-11 74.3 152 34.9
ATR0796G165 Amborella trichopoda HOM05M003922 ORTHO05M004332 1.0e-10 71.6 150 30.7
MBI18_g17308_MAGBIO Magnolia biondii HOM05M003922 ORTHO05M004332 3.0e-10 70.1 151 29.8
CDE06G2513 Ceratophyllum demersum HOM05M006021 ORTHO05M005504 6.6e-10 68.9 145 29.7
Ma08_g24490 Musa acuminata HOM05M006021 ORTHO05M005504 6.6e-10 68.9 148 25.0
CDE07G0552 Ceratophyllum demersum HOM05M006021 ORTHO05M005504 1.1e-09 68.2 145 28.3
AT1G02550 Arabidopsis thaliana HOM05M014660 ORTHO05M004332 1.5e-09 67.8 153 30.1
Potri.002G195000 Populus trichocarpa HOM05M014660 ORTHO05M004332 1.9e-09 67.4 169 28.4
OB08G24120 Oryza brachyantha HOM05M000045 ORTHO05M000061 3.3e-09 66.6 163 28.2
TRIDC5BG015560 Triticum dicoccoides HOM05M003922 ORTHO05M004332 5.6e-09 65.9 77 44.2
ATR1152G035 Amborella trichopoda HOM05M003922 ORTHO05M004332 7.3e-09 65.5 146 28.8
TRIDC5AG013440 Triticum dicoccoides HOM05M003922 ORTHO05M004332 7.3e-09 65.5 77 44.2
Spipo0G0035500 Spirodela polyrhiza HOM05M006021 ORTHO05M005504 3.6e-08 63.2 144 27.8
OsR498G0816215800.01 Oryza sativa ssp. indica HOM05M000045 ORTHO05M000061 8.0e-08 62.0 165 29.7
AT2G47340 Arabidopsis thaliana HOM05M014660 ORTHO05M004332 1.8e-07 60.8 158 26.6
Glyma.17G044900 Glycine max HOM05M006021 ORTHO05M005504 6.8e-07 58.9 160 25.6
OsKitaake08g172800 Oryza sativa Kitaake HOM05M000045 ORTHO05M000061 1.5e-06 57.8 166 28.3
Os08g0450200 Oryza sativa ssp. japonica HOM05M000045 ORTHO05M000061 1.5e-06 57.8 166 28.3
Spipo20G0006800 Spirodela polyrhiza HOM05M000045 ORTHO05M000061 3.4e-06 56.6 169 26.0
Solyc01g091050.4 Solanum lycopersicum HOM05M000045 ORTHO05M000061 4.4e-06 56.2 146 25.3
Asa3G02417 Allium sativum HOM05M011296 ORTHO05M000922 5.8e-06 55.8 139 30.2
PH02Gene38922 Phyllostachys edulis HOM05M000045 ORTHO05M000061 7.5e-06 55.5 162 25.9
Potri.002G194800 Populus trichocarpa HOM05M014660 ORTHO05M004332 7.5e-06 55.5 151 26.5
Potri.006G134900 Populus trichocarpa HOM05M006021 ORTHO05M005504 7.5e-06 55.5 149 24.8
HPP92_010882 Vanilla planifolia HOM05M000531 ORTHO05M000524 9.8e-06 55.1 112 31.2


User provided reference genes

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