Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g227500 Oryza sativa Kitaake HOM05M020753 ORTHO05M020057 1.7e-89 332.0 186 100.0
Os11g0670900 Oryza sativa ssp. japonica HOM05M020753 ORTHO05M020057 1.7e-89 332.0 186 100.0
GWHGAZTO065048 Oryza alta HOM05M020753 ORTHO05M020057 1.1e-61 239.6 187 79.1
GWHGAZTO013065 Oryza alta HOM05M020753 ORTHO05M020057 1.0e-46 189.9 184 64.1
PH02Gene27768 Phyllostachys edulis HOM05M001099 ORTHO05M002940 3.4e-13 78.6 154 36.4
GWHGAORA001834 Cenchrus purpureus HOM05M001099 ORTHO05M001907 6.4e-12 74.3 154 37.0
OsR498G1120691200.01 Oryza sativa ssp. indica HOM05M001099 ORTHO05M001907 6.4e-12 74.3 154 36.4
OsR498G1120691300.01 Oryza sativa ssp. indica HOM05M001099 ORTHO05M001907 1.1e-11 73.6 154 36.4
GWHGAORA054152 Cenchrus purpureus HOM05M001099 ORTHO05M001907 1.4e-11 73.2 154 37.7
OsKitaake11g225100 Oryza sativa Kitaake HOM05M001099 ORTHO05M001907 1.4e-11 73.2 154 35.7
Os11g0666100 Oryza sativa ssp. japonica HOM05M001099 ORTHO05M001907 1.4e-11 73.2 154 35.7
Os11g0666200 Oryza sativa ssp. japonica HOM05M001099 ORTHO05M001907 1.4e-11 73.2 154 35.7
GWHGAORA001830 Cenchrus purpureus HOM05M001099 ORTHO05M001907 2.4e-11 72.4 154 37.0
GWHGAZTO013026 Oryza alta HOM05M001099 ORTHO05M001907 3.2e-11 72.0 154 35.1
GWHGAZTO013030 Oryza alta HOM05M001099 ORTHO05M001907 4.1e-11 71.6 154 36.4
PH02Gene21624 Phyllostachys edulis HOM05M000009 ORTHO05M013291 4.1e-11 71.6 154 37.7
PH02Gene21625 Phyllostachys edulis HOM05M000009 ORTHO05M013291 4.1e-11 71.6 154 37.7
Seita.8G129900 Setaria italica HOM05M001099 ORTHO05M001907 9.2e-11 70.5 154 35.7
Sevir.8G137200 Setaria viridis HOM05M001099 ORTHO05M001907 9.2e-11 70.5 154 35.7
GWHGAZTO013034 Oryza alta HOM05M001099 ORTHO05M001907 1.2e-10 70.1 147 36.1
AET7Gv20041300 Aegilops tauschii HOM05M001099 ORTHO05M001907 1.6e-10 69.7 154 33.1
GWHGAORA048974 Cenchrus purpureus HOM05M001099 ORTHO05M001907 1.6e-10 69.7 154 35.7
GWHGAORA001831 Cenchrus purpureus HOM05M001099 ORTHO05M001907 2.7e-10 68.9 154 36.4
EJB05_49741 Eragrostis curvula HOM05M000009 ORTHO05M013291 2.7e-10 68.9 154 33.8
OsKitaake11g223900 Oryza sativa Kitaake HOM05M001099 ORTHO05M001907 2.7e-10 68.9 154 35.1
Os11g0664000 Oryza sativa ssp. japonica HOM05M001099 ORTHO05M001907 2.7e-10 68.9 154 35.1
Os12g0499700 Oryza sativa ssp. japonica HOM05M001099 ORTHO05M001907 2.7e-10 68.9 154 34.4
Ot_Chr6_g25657 Oropetium thomaeum HOM05M001099 ORTHO05M001907 4.6e-10 68.2 166 34.3
Ot_Chr6_gn36819 Oropetium thomaeum HOM05M001099 ORTHO05M001907 4.6e-10 68.2 154 35.1
OB11G26630 Oryza brachyantha HOM05M001099 ORTHO05M001907 4.6e-10 68.2 154 34.4
PH02Gene46945 Phyllostachys edulis HOM05M000038 ORTHO05M001907 4.6e-10 68.2 158 35.4
TraesCS2D03G0121700 Triticum aestivum HOM05M000038 ORTHO05M001907 4.6e-10 68.2 154 34.4
Ot_Chr6_gn36821 Oropetium thomaeum HOM05M001099 ORTHO05M001907 7.8e-10 67.4 154 35.7
OB11G26580 Oryza brachyantha HOM05M001099 ORTHO05M001907 7.8e-10 67.4 153 34.0
EJB05_49742 Eragrostis curvula HOM05M000009 ORTHO05M013291 1.0e-09 67.0 154 32.5
V3.Lp_chr7_0.1G12452 Lolium perenne HOM05M000038 ORTHO05M001907 1.3e-09 66.6 154 34.4
GWHGAZTO013036 Oryza alta HOM05M000038 ORTHO05M001907 1.7e-09 66.2 154 33.1
OsKitaake08g121600 Oryza sativa Kitaake HOM05M000009 ORTHO05M013291 1.7e-09 66.2 152 32.9
OsR498G0815840500.01 Oryza sativa ssp. indica HOM05M001099 ORTHO05M013291 1.7e-09 66.2 152 32.9
Os08g0343000 Oryza sativa ssp. japonica HOM05M000009 ORTHO05M013291 1.7e-09 66.2 152 32.9
OB11G26600 Oryza brachyantha HOM05M001099 ORTHO05M001907 2.3e-09 65.9 158 34.8
OsKitaake11g225700 Oryza sativa Kitaake HOM05M001099 ORTHO05M001907 2.3e-09 65.9 158 33.5
PH02Gene21622 Phyllostachys edulis HOM05M000009 ORTHO05M013291 2.3e-09 65.9 150 34.7
Dexi6B01G0009490 Digitaria exilis HOM05M000009 ORTHO05M013291 3.0e-09 65.5 154 32.5
EJB05_55381 Eragrostis curvula HOM05M001099 ORTHO05M002940 3.0e-09 65.5 154 31.8
GWHGAZTO013029 Oryza alta HOM05M001099 ORTHO05M001907 3.9e-09 65.1 172 32.6
OB11G26570 Oryza brachyantha HOM05M001099 ORTHO05M001907 5.1e-09 64.7 154 33.1
OsKitaake11g225400 Oryza sativa Kitaake HOM05M001099 ORTHO05M001907 5.1e-09 64.7 154 37.0
Os11g0667000 Oryza sativa ssp. japonica HOM05M001099 ORTHO05M001907 5.1e-09 64.7 154 37.0
PH02Gene46943 Phyllostachys edulis HOM05M004069 ORTHO05M001907 5.1e-09 64.7 158 34.8
GWHGAORA051614 Cenchrus purpureus HOM05M001099 ORTHO05M002940 8.6e-09 63.9 136 36.0
Misin10G179200 Miscanthus sinensis HOM05M000009 ORTHO05M011918 8.6e-09 63.9 154 34.4
V3.Lp_chr1_0G15710 Lolium perenne HOM05M000038 ORTHO05M001907 2.5e-08 62.4 152 34.9
Ot_Chr10_g26464 Oropetium thomaeum HOM05M000009 ORTHO05M011918 4.3e-08 61.6 155 34.2
GWHGASIY029973 Secale cereale HOM05M000038 ORTHO05M001907 4.3e-08 61.6 154 32.5
TraesCS3D03G1091800 Triticum aestivum HOM05M000038 ORTHO05M001907 4.3e-08 61.6 154 33.8
TRIDC2AG002510 Triticum dicoccoides HOM05M001099 ORTHO05M001907 4.3e-08 61.6 154 32.5
AET3Gv21139500 Aegilops tauschii HOM05M000038 ORTHO05M001907 5.6e-08 61.2 154 33.8
Misin10G175100 Miscanthus sinensis HOM05M000009 ORTHO05M011918 5.6e-08 61.2 154 33.8
OsKitaake11g226000 Oryza sativa Kitaake HOM05M001099 ORTHO05M001907 5.6e-08 61.2 154 33.1
TraesCS2B03G0074900 Triticum aestivum HOM05M001099 ORTHO05M001907 5.6e-08 61.2 154 31.8
TraesCS2B03G0114500 Triticum aestivum HOM05M000038 ORTHO05M001907 5.6e-08 61.2 154 32.5
TRITD2Bv1G012650 Triticum turgidum HOM05M001099 ORTHO05M001907 5.6e-08 61.2 154 32.5
Horvu_MOREX_2H01G024600 Hordeum vulgare HOM05M000038 ORTHO05M001907 7.3e-08 60.8 154 33.8
Pahal.8G253400 Panicum hallii HOM05M000009 ORTHO05M011918 7.3e-08 60.8 147 31.3
TraesCS2A03G0050300 Triticum aestivum HOM05M000038 ORTHO05M001907 7.3e-08 60.8 154 31.8
GWHGAORA000105 Cenchrus purpureus HOM05M000009 ORTHO05M002940 1.2e-07 60.1 137 30.7
Ot_Chr4_g25102 Oropetium thomaeum HOM05M000009 ORTHO05M000021 1.2e-07 60.1 159 30.2
GWHGAZTO085841 Oryza alta HOM05M001099 ORTHO05M001907 1.2e-07 60.1 172 31.4
PH02Gene16485 Phyllostachys edulis HOM05M001099 ORTHO05M011557 1.2e-07 60.1 155 30.3
PH02Gene17467 Phyllostachys edulis HOM05M000009 ORTHO05M011557 1.2e-07 60.1 142 28.2
Sspon.04G0033970-1C Saccharum spontaneum HOM05M000038 ORTHO05M001907 1.2e-07 60.1 152 32.9
EJB05_26010 Eragrostis curvula HOM05M000009 ORTHO05M011918 1.6e-07 59.7 137 32.1
Bradi4g10500 Brachypodium distachyon HOM05M000038 ORTHO05M001907 2.1e-07 59.3 154 30.5
GWHGAORA057346 Cenchrus purpureus HOM05M000038 ORTHO05M001907 2.8e-07 58.9 154 35.1
Horvu_MOREX_2H01G024900 Hordeum vulgare HOM05M000038 ORTHO05M001907 2.8e-07 58.9 154 31.8
Zjn_sc00042.1.g00250.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M001099 ORTHO05M002940 2.8e-07 58.9 147 31.3
V3.Lp_chr4_0G13946 Lolium perenne HOM05M000038 ORTHO05M001907 3.6e-07 58.5 154 33.8
MisinT318800 Miscanthus sinensis HOM05M000038 ORTHO05M001907 3.6e-07 58.5 152 32.2
Horvu_MOREX_3H01G660200 Hordeum vulgare HOM05M000038 ORTHO05M001907 4.7e-07 58.2 154 31.8
TraesCS2D03G0051000 Triticum aestivum HOM05M000038 ORTHO05M001907 4.7e-07 58.2 154 30.5
TRITD2Bv1G007610 Triticum turgidum HOM05M000038 ORTHO05M001907 6.2e-07 57.8 154 30.5
AET2Gv20045400 Aegilops tauschii HOM05M000038 ORTHO05M001907 8.1e-07 57.4 154 30.5
EJB05_25996 Eragrostis curvula HOM05M000009 ORTHO05M011918 8.1e-07 57.4 144 28.5
EJB05_25997 Eragrostis curvula HOM05M000009 ORTHO05M002940 8.1e-07 57.4 155 31.0
EJB05_50078 Eragrostis curvula HOM05M000009 ORTHO05M002940 8.1e-07 57.4 155 31.0
Sspon.06G0026900-1B Saccharum spontaneum HOM05M001099 ORTHO05M002940 8.1e-07 57.4 155 30.3
TraesCS3B03G1362700 Triticum aestivum HOM05M001099 ORTHO05M001907 8.1e-07 57.4 154 31.8
Horvu_MOREX_5H01G636500 Hordeum vulgare HOM05M000038 ORTHO05M001907 1.1e-06 57.0 154 32.5
V3.Lp_chr7_0.1G7728 Lolium perenne HOM05M000038 ORTHO05M001907 1.1e-06 57.0 154 29.9
OsKitaake06g036900 Oryza sativa Kitaake HOM05M001099 ORTHO05M001907 1.4e-06 56.6 167 32.9
Os06g0151700 Oryza sativa ssp. japonica HOM05M001099 ORTHO05M001907 1.4e-06 56.6 167 32.9
TraesCS2A03G0050200 Triticum aestivum HOM05M000038 ORTHO05M001907 1.4e-06 56.6 154 32.5
Zjn_sc00103.1.g00610.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M001099 ORTHO05M013494 1.4e-06 56.6 155 29.7
V3.Lp_chr1_0G17170 Lolium perenne HOM05M000038 ORTHO05M001907 1.8e-06 56.2 153 31.4
TRITD3Av1G269510 Triticum turgidum HOM05M000038 ORTHO05M001907 1.8e-06 56.2 154 31.8
Bradi4g10610 Brachypodium distachyon HOM05M000038 ORTHO05M001907 2.4e-06 55.8 154 31.2
V3.Lp_chr1_0G15712 Lolium perenne HOM05M000038 ORTHO05M001907 2.4e-06 55.8 161 30.4
TraesCS4A03G1171500 Triticum aestivum HOM05M001099 ORTHO05M001907 2.4e-06 55.8 151 30.5
Bradi4g10470 Brachypodium distachyon HOM05M000038 ORTHO05M001907 3.1e-06 55.5 154 31.2
GWHGAZTO013022 Oryza alta HOM05M001099 ORTHO05M001907 3.1e-06 55.5 138 31.9
GWHGASIY027231 Secale cereale HOM05M001099 ORTHO05M001907 3.1e-06 55.5 158 32.3
TraesCS5B03G1122600 Triticum aestivum HOM05M000038 ORTHO05M001907 3.1e-06 55.5 154 29.9
TraesCS6B03G0158900 Triticum aestivum HOM05M000009 ORTHO05M011557 3.1e-06 55.5 142 27.5
TRITD3Bv1G264170 Triticum turgidum HOM05M001099 ORTHO05M001907 3.1e-06 55.5 154 31.8
TRITD5Bv1G221480 Triticum turgidum HOM05M000038 ORTHO05M001907 3.1e-06 55.5 154 29.9
Sobic.008G002700 Sorghum bicolor HOM05M000038 ORTHO05M001907 4.0e-06 55.1 152 32.9
GWHGAORA056328 Cenchrus purpureus HOM05M001099 ORTHO05M013494 5.2e-06 54.7 155 27.1
GWHGAZTO065043 Oryza alta HOM05M000009 ORTHO05M002940 5.2e-06 54.7 155 29.7
TraesCS2A03G0078300 Triticum aestivum HOM05M000038 ORTHO05M001907 5.2e-06 54.7 154 30.5
TraesCS5A03G0494900 Triticum aestivum HOM05M000009 ORTHO05M011918 5.2e-06 54.7 154 28.6
TRITD5Av1G136160 Triticum turgidum HOM05M000009 ORTHO05M011918 5.2e-06 54.7 154 28.6
OB0065G10030 Oryza brachyantha HOM05M000038 ORTHO05M001907 6.8e-06 54.3 158 34.2
Sspon.04G0033970-2D Saccharum spontaneum HOM05M000038 ORTHO05M001907 6.8e-06 54.3 140 30.7
Sspon.06G0031490-2D Saccharum spontaneum HOM05M001099 ORTHO05M002940 6.8e-06 54.3 155 29.0
Misin09G205500 Miscanthus sinensis HOM05M001099 ORTHO05M002940 8.9e-06 53.9 147 29.9


User provided reference genes

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