Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaakeM050606 Oryza sativa Kitaake HOM05M004499 ORTHO05M005427 2.0e-141 505.0 253 100.0
Os11g0670700 Oryza sativa ssp. japonica HOM05M004499 ORTHO05M005427 2.0e-141 505.0 253 100.0
OsR498G1120699900.01 Oryza sativa ssp. indica HOM05M004499 ORTHO05M005427 8.4e-140 499.6 253 98.8
OsKitaake09g173600 Oryza sativa Kitaake HOM05M004499 ORTHO05M005427 3.2e-139 497.7 253 98.4
Os09g0529700 Oryza sativa ssp. japonica HOM05M004499 ORTHO05M005427 3.2e-139 497.7 253 98.4
OB09G23770 Oryza brachyantha HOM05M004499 ORTHO05M005427 3.0e-137 491.1 253 96.0
GWHGAZTO098801 Oryza alta HOM05M004499 ORTHO05M005427 2.5e-136 488.0 260 95.0
PH02Gene26222 Phyllostachys edulis HOM05M004499 ORTHO05M005427 3.0e-129 464.5 253 90.9
TraesCS5A03G0767400 Triticum aestivum HOM05M004499 ORTHO05M005427 1.5e-128 462.2 253 90.1
GWHGASIY027398 Secale cereale HOM05M004499 ORTHO05M005427 1.9e-128 461.8 253 89.7
Horvu_MOREX_5H01G477400 Hordeum vulgare HOM05M004499 ORTHO05M005427 4.3e-128 460.7 253 89.7
Bradi4g35830 Brachypodium distachyon HOM05M004499 ORTHO05M005427 2.1e-127 458.4 253 88.9
Dexi5A01G0002660 Digitaria exilis HOM05M004499 ORTHO05M005427 3.6e-127 457.6 251 89.2
Seita.2G283200 Setaria italica HOM05M004499 ORTHO05M005427 3.6e-127 457.6 253 88.5
Sevir.2G293300 Setaria viridis HOM05M004499 ORTHO05M005427 3.6e-127 457.6 253 88.5
TraesCS5D03G0727100 Triticum aestivum HOM05M004499 ORTHO05M005427 4.8e-127 457.2 253 88.9
Pahal.2G339900 Panicum hallii HOM05M004499 ORTHO05M005427 8.1e-127 456.4 251 88.8
Sobic.002G271900 Sorghum bicolor HOM05M004499 ORTHO05M005427 1.8e-126 455.3 253 89.3
GWHGAORA007472 Cenchrus purpureus HOM05M004499 ORTHO05M005427 5.3e-126 453.8 254 88.2
GWHGAORA029422 Cenchrus purpureus HOM05M004499 ORTHO05M005427 6.9e-126 453.4 251 87.6
Misin03G241600 Miscanthus sinensis HOM05M004499 ORTHO05M005427 9.0e-126 453.0 253 88.9
Ot_Chr4_g07657 Oropetium thomaeum HOM05M004499 ORTHO05M005427 3.4e-125 451.1 251 88.0
Sobic.001G479300 Sorghum bicolor HOM05M004499 ORTHO05M005427 7.6e-125 449.9 249 89.2
Misin02G450700 Miscanthus sinensis HOM05M004499 ORTHO05M005427 1.7e-124 448.7 249 88.8
Zm00007a00051216 Zea mays B104 HOM05M004499 ORTHO05M005427 3.8e-124 447.6 253 87.4
EJB05_42250 Eragrostis curvula HOM05M004499 ORTHO05M005427 6.4e-124 446.8 268 83.6
Sspon.01G0004740-1A Saccharum spontaneum HOM05M004499 ORTHO05M005427 8.4e-124 446.4 249 88.4
Sspon.01G0004740-2C Saccharum spontaneum HOM05M004499 ORTHO05M005427 8.4e-124 446.4 249 88.4
TraesCS5B03G1038400 Triticum aestivum HOM05M004499 ORTHO05M005427 7.1e-123 443.4 253 86.2
TRITD5Av1G179910 Triticum turgidum HOM05M004499 ORTHO05M005427 7.1e-123 443.4 292 77.7
GWHGAORA048338 Cenchrus purpureus HOM05M004499 ORTHO05M005427 1.6e-122 442.2 245 89.0
Sspon.01G0004740-1T Saccharum spontaneum HOM05M004499 ORTHO05M005427 6.0e-122 440.3 254 86.6
DDU242G0022 Dioscorea dumetorum HOM05M004499 ORTHO05M005427 4.9e-116 420.6 253 81.4
DDU509G0046 Dioscorea dumetorum HOM05M004499 ORTHO05M005427 4.9e-116 420.6 253 81.4
Dexi2A01G0023930 Digitaria exilis HOM05M004499 ORTHO05M005427 1.1e-115 419.5 234 87.2
MBI15_g26086_MAGBIO Magnolia biondii HOM05M004499 ORTHO05M005427 2.7e-114 414.8 248 80.6
evm.TU.AsparagusV1_01.3445.V1.1 Asparagus officinalis HOM05M004499 ORTHO05M005427 4.6e-114 414.1 249 80.3
CALSI_Maker00023536 Calamus simplicifolius HOM05M004499 ORTHO05M005427 7.9e-114 413.3 249 79.9
Dexi2B01G0022560 Digitaria exilis HOM05M004499 ORTHO05M005427 3.0e-113 411.4 262 79.8
Glyma.08G314600 Glycine max HOM05M004499 ORTHO05M005427 3.0e-113 411.4 250 80.0
Ma10_g23680 Musa acuminata HOM05M004499 ORTHO05M005427 6.7e-113 410.2 249 79.1
p5.00_sc00042_p0030 Elaeis guineensis HOM05M004499 ORTHO05M005427 1.9e-112 408.7 249 78.7
Solyc10g006320.3 Solanum lycopersicum HOM05M004499 ORTHO05M005427 2.5e-112 408.3 249 79.1
Asa3G00448 Allium sativum HOM05M004499 ORTHO05M005427 3.3e-112 407.9 250 79.2
ATR0749G094 Amborella trichopoda HOM05M004499 ORTHO05M005427 9.6e-112 406.4 249 79.9
Potri.001G424600 Populus trichocarpa HOM05M004499 ORTHO05M005427 6.3e-111 403.7 249 78.3
Glyma.18G099600 Glycine max HOM05M004499 ORTHO05M005427 8.2e-111 403.3 250 78.4
Aco015143 Ananas comosus HOM05M004499 ORTHO05M005427 1.4e-110 402.5 238 81.9
PH02Gene35364 Phyllostachys edulis HOM05M004499 ORTHO05M005427 2.0e-109 398.7 211 91.5
TraesCS5B03G0802000 Triticum aestivum HOM05M004499 ORTHO05M005427 4.5e-109 397.5 253 80.6
Spipo10G0012100 Spirodela polyrhiza HOM05M004499 ORTHO05M005427 7.6e-109 396.7 238 79.8
AT4G27040 Arabidopsis thaliana HOM05M004499 ORTHO05M005427 1.4e-107 392.5 249 75.5
SEGI_16862 Sequoiadendron giganteum HOM05M004499 ORTHO05M005427 1.2e-106 389.4 250 75.2
Sspon.01G0004740-3D Saccharum spontaneum HOM05M004499 ORTHO05M005427 6.1e-106 387.1 221 89.1
Zosma01g40060 Zostera marina HOM05M004499 ORTHO05M005427 7.9e-106 386.7 243 77.0
SMO232G0102 Selaginella moellendorffii HOM05M004499 ORTHO05M005427 9.7e-104 379.8 245 73.9
TRITD5Bv1G209400 Triticum turgidum HOM05M004499 ORTHO05M005427 4.8e-103 377.5 219 83.6
OsKitaake11g227266 Oryza sativa Kitaake HOM05M004499 ORTHO05M005427 2.6e-101 371.7 184 100.0
Mapoly0007s0150 Marchantia polymorpha HOM05M004499 ORTHO05M005427 5.5e-99 364.0 240 71.2
Pp3c10_13560 Physcomitrium patens HOM05M004499 ORTHO05M005427 5.1e-97 357.5 238 73.5
CDE08G1370 Ceratophyllum demersum HOM05M004499 ORTHO05M005427 7.4e-96 353.6 244 71.7
HPP92_001822 Vanilla planifolia HOM05M004499 ORTHO05M005427 3.8e-92 341.3 217 76.0
Zm00001eb103240 Zea mays B73 HOM05M004499 ORTHO05M005427 4.2e-91 337.8 187 91.4
CBR_g28043 Chara braunii HOM05M004499 ORTHO05M005427 4.1e-86 321.2 253 62.5
SEGI_13452 Sequoiadendron giganteum HOM05M004499 ORTHO05M005427 2.0e-80 302.4 193 75.1
GWHGAORA029408 Cenchrus purpureus HOM05M004499 ORTHO05M005427 1.6e-74 282.7 253 59.7
GWHGAORA057051 Cenchrus purpureus HOM05M004499 ORTHO05M005427 7.5e-72 273.9 152 89.5
Cre17.g706650 Chlamydomonas reinhardtii HOM05M004499 ORTHO05M005427 1.4e-70 269.6 238 52.5
GWHGAZTO052392 Oryza alta HOM05M004499 ORTHO05M005427 7.0e-70 267.3 134 98.5
GWHGAORA036532 Cenchrus purpureus HOM05M004499 ORTHO05M005427 2.7e-69 265.4 150 86.0
MCO16G427 Micromonas commoda HOM05M004499 ORTHO05M005427 3.4e-64 248.4 249 49.4
Misin04G255300 Miscanthus sinensis HOM05M004499 ORTHO05M005427 1.6e-61 239.6 151 81.5
Zjn_sc00050.1.g01530.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004499 ORTHO05M005427 3.5e-61 238.4 253 54.5
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05M004499 ORTHO05M005427 1.0e-60 236.9 152 75.0
Asa3G00447 Allium sativum HOM05M004499 ORTHO05M005427 1.2e-56 223.4 150 72.0
PRCOL_00005955 Prasinoderma coloniale HOM05M004499 ORTHO05M005427 1.1e-46 190.3 246 43.9
TRIDC5BG050650 Triticum dicoccoides HOM05M004499 ORTHO05M005427 4.6e-45 184.9 100 86.0
Dexi5B01G0002710 Digitaria exilis HOM05M004499 ORTHO05M005427 4.6e-37 158.3 252 41.7
TRITD5Bv1G169490 Triticum turgidum HOM05M004499 ORTHO05M005427 2.1e-26 122.9 67 82.1
GWHGAORA034409 Cenchrus purpureus HOM05M004499 ORTHO05M005427 1.4e-25 120.2 74 79.7
Asa3G01820 Allium sativum HOM05M000088 ORTHO05M000232 2.9e-23 112.5 91 63.7
OsR498G0917840400.01 Oryza sativa ssp. indica HOM05M004499 ORTHO05M005427 1.3e-20 103.6 54 98.1
Misin01G451200 Miscanthus sinensis HOM05M004499 ORTHO05M005427 4.8e-18 95.1 63 81.0
SEGI_35638 Sequoiadendron giganteum HOM05M004499 ORTHO05M005427 8.1e-18 94.4 67 67.2
Misin01G083100 Miscanthus sinensis HOM05M003672 ORTHO05M004051 7.6e-16 87.8 54 83.3
Sobic.001G092300 Sorghum bicolor HOM05M003672 ORTHO05M004051 2.9e-15 85.9 54 83.3
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05M004499 ORTHO05M005427 1.9e-14 83.2 55 74.5
Sspon.01G0056400-1C Saccharum spontaneum HOM05M004499 ORTHO05M005427 6.7e-12 74.7 54 75.9
Zm00007a00005375 Zea mays B104 HOM05M004499 ORTHO05M005427 3.3e-11 72.4 65 63.1
Zm00001eb057030 Zea mays B73 HOM05M003672 ORTHO05M004051 5.6e-11 71.6 55 70.9
Asa7G06942 Allium sativum HOM05M005839 ORTHO05M006781 1.1e-09 67.4 43 74.4
SEGI_36060 Sequoiadendron giganteum HOM05M004499 ORTHO05M005427 7.6e-08 61.2 56 51.8
Spipo10G0012400 Spirodela polyrhiza HOM05M004499 ORTHO05M005427 7.6e-08 61.2 34 85.3


User provided reference genes

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