Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0549610 Oryza sativa ssp. japonica HOM05M007622 ORTHO05M012749 0.0e+00 1130.5 550 100.0
OsKitaake11g161400 Oryza sativa Kitaake HOM05M007622 ORTHO05M012749 0.0e+00 1078.2 664 82.8
OsR498G1120327700.01 Oryza sativa ssp. indica HOM05M007622 ORTHO05M012749 2.6e-234 814.7 536 78.2
OsKitaake11g161300 Oryza sativa Kitaake HOM05M007622 ORTHO05M012749 2.8e-172 608.6 665 52.8
GWHGAZTO064420 Oryza alta HOM05M007622 ORTHO05M012749 2.7e-167 592.0 682 52.6
GWHGAZTO040054 Oryza alta HOM05M007622 ORTHO05M012749 1.7e-153 546.2 533 59.3
Os11g0549605 Oryza sativa ssp. japonica HOM05M007622 ORTHO05M012749 3.9e-150 535.0 598 53.2
GWHGAZTO064419 Oryza alta HOM05M007622 ORTHO05M012749 1.4e-136 490.0 433 62.1
OB11G22680 Oryza brachyantha HOM05M007622 ORTHO05M012749 1.4e-131 473.4 623 46.5
OB11G22690 Oryza brachyantha HOM05M007622 ORTHO05M012749 1.2e-98 364.0 571 43.3
OsKitaake07g160500 Oryza sativa Kitaake HOM05M007622 ORTHO05M012749 1.0e-97 360.9 440 50.5
Os07g0514400 Oryza sativa ssp. japonica HOM05M007622 ORTHO05M012749 1.0e-97 360.9 440 50.5
OsR498G1120327500.01 Oryza sativa ssp. indica HOM05M007622 ORTHO05M012749 1.7e-73 280.4 365 46.6
PH02Gene25411 Phyllostachys edulis HOM05M007622 ORTHO05M012749 1.1e-59 234.6 364 42.3
GWHGAORA043438 Cenchrus purpureus HOM05M007622 ORTHO05M011317 2.2e-44 183.7 643 26.7
OB11G22700 Oryza brachyantha HOM05M007622 ORTHO05M012749 9.3e-43 178.3 232 44.8
PH02Gene25413 Phyllostachys edulis HOM05M007622 ORTHO05M011317 2.8e-39 166.8 351 33.0
Pahal.8G223000 Panicum hallii HOM05M007622 ORTHO05M011317 2.4e-35 153.7 736 25.0
PH02Gene25415 Phyllostachys edulis HOM05M007622 ORTHO05M011317 3.2e-35 153.3 577 26.7
GWHGAORA001081 Cenchrus purpureus HOM05M007622 ORTHO05M011317 5.5e-35 152.5 743 23.4
Sobic.005G172700 Sorghum bicolor HOM05M007622 ORTHO05M011317 1.0e-33 148.3 738 25.1
Seita.8G174700 Setaria italica HOM05M007622 ORTHO05M011317 1.3e-33 147.9 500 27.8
OB11G24370 Oryza brachyantha HOM05M007622 ORTHO05M011317 3.0e-33 146.7 748 23.9
Sspon.06G0025870-2D Saccharum spontaneum HOM05M007622 ORTHO05M011317 1.5e-32 144.4 477 26.8
Sspon.06G0025870-1B Saccharum spontaneum HOM05M007622 ORTHO05M011317 1.9e-32 144.1 477 26.8
MisinT012000 Miscanthus sinensis HOM05M007622 ORTHO05M011317 2.1e-31 140.6 697 24.4
Dexi8B01G0012830 Digitaria exilis HOM05M007622 ORTHO05M011317 2.8e-31 140.2 508 27.2
Dexi8A01G0014060 Digitaria exilis HOM05M007622 ORTHO05M011317 1.4e-30 137.9 348 31.0
OsR498G1120452900.01 Oryza sativa ssp. indica HOM05M007622 ORTHO05M011317 3.2e-27 126.7 340 32.4
GWHGAZTO064657 Oryza alta HOM05M007622 ORTHO05M011317 5.5e-27 125.9 729 21.9
OsKitaake11g187000 Oryza sativa Kitaake HOM05M007622 ORTHO05M011317 1.6e-26 124.4 340 31.8
Os11g0598800 Oryza sativa ssp. japonica HOM05M007622 ORTHO05M011317 1.6e-26 124.4 340 32.1
OB11G24410 Oryza brachyantha HOM05M007622 ORTHO05M011317 6.0e-26 122.5 354 28.8
OsKitaake11g185700 Oryza sativa Kitaake HOM05M007622 ORTHO05M019717 1.0e-25 121.7 340 31.5
OsR498G0714419600.01 Oryza sativa ssp. indica HOM05M007622 ORTHO05M012749 4.3e-24 116.3 112 57.1
Sevir.8G183900 Setaria viridis HOM05M007622 ORTHO05M011317 6.3e-23 112.5 295 30.5
GWHGAORA001101 Cenchrus purpureus HOM05M007622 ORTHO05M011317 8.2e-23 112.1 281 29.9
OsKitaake01g371500 Oryza sativa Kitaake HOM05M027878 ORTHO05M025627 8.2e-23 112.1 345 28.7
OsKitaake11g185600 Oryza sativa Kitaake HOM05M007622 ORTHO05M011317 4.5e-21 106.3 598 23.9
OsKitaake07g160400 Oryza sativa Kitaake HOM05M007622 ORTHO05M012749 1.3e-20 104.8 140 45.7
OsR498G1120440400.01 Oryza sativa ssp. indica HOM05M045951 ORTHO05M032614 4.6e-18 96.3 456 24.8
EJB05_27648 Eragrostis curvula HOM05M007622 ORTHO05M011317 1.7e-15 87.8 181 33.7
OsKitaake11g184450 Oryza sativa Kitaake HOM05M045951 ORTHO05M032614 1.7e-15 87.8 301 27.2
GWHGAZTO012616 Oryza alta HOM05M007622 ORTHO05M011317 4.5e-13 79.7 143 32.2
OsR498G1120446300.01 Oryza sativa ssp. indica HOM05M007622 ORTHO05M011317 8.5e-12 75.5 254 28.0
V3.Lp_chr5_0G7030 Lolium perenne HOM05M003185 ORTHO05M003774 2.1e-10 70.9 223 27.4
PH02Gene33972 Phyllostachys edulis HOM05M003185 ORTHO05M003774 2.3e-09 67.4 239 26.4
GWHGAORA054603 Cenchrus purpureus HOM05M002989 ORTHO05M003268 5.1e-09 66.2 227 28.6
OsR498G0102183700.01 Oryza sativa ssp. indica HOM05M027878 ORTHO05M025627 2.2e-07 60.8 132 33.3
Bradi4g14601 Brachypodium distachyon HOM05M003185 ORTHO05M003774 1.8e-06 57.8 155 27.1
GWHGAZTO088894 Oryza alta HOM05M003185 ORTHO05M003774 1.8e-06 57.8 61 39.3
ATR1153G111 Amborella trichopoda HOM05M002989 ORTHO05M003268 2.4e-06 57.4 149 23.5
OB03G14930 Oryza brachyantha HOM05M002989 ORTHO05M003268 2.4e-06 57.4 144 23.6
GWHGAZTO057918 Oryza alta HOM05M027878 ORTHO05M025627 4.1e-06 56.6 147 31.3
CDE06G0073 Ceratophyllum demersum HOM05M002989 ORTHO05M003268 5.3e-06 56.2 113 31.9
Asa5G02117 Allium sativum HOM05M002989 ORTHO05M003268 7.0e-06 55.8 138 22.5
OsR498G1120446600.01 Oryza sativa ssp. indica HOM05M018695 ORTHO05M019717 9.1e-06 55.5 115 33.9
Pahal.9G592800 Panicum hallii HOM05M002989 ORTHO05M003268 9.1e-06 55.5 103 29.1


User provided reference genes

Program Settings