Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g158200 Oryza sativa Kitaake HOM05M005100 ORTHO05M006736 4.3e-39 163.3 77 100.0
Os11g0543800 Oryza sativa ssp. japonica HOM05M005100 ORTHO05M006736 4.3e-39 163.3 77 100.0
OsR498G1120311600.01 Oryza sativa ssp. indica HOM05M005100 ORTHO05M006736 2.1e-38 161.0 77 97.4
OB11G22450 Oryza brachyantha HOM05M005100 ORTHO05M006736 5.8e-36 152.9 77 92.2
V3.Lp_chr4_0G16242 Lolium perenne HOM05M005100 ORTHO05M006736 1.0e-32 142.1 77 85.7
PH02Gene24732 Phyllostachys edulis HOM05M005100 ORTHO05M006736 1.0e-32 142.1 77 84.4
Dexi4A01G0013640 Digitaria exilis HOM05M005100 ORTHO05M006736 1.3e-32 141.7 77 81.8
Dexi8A01G0011660 Digitaria exilis HOM05M005100 ORTHO05M006736 1.3e-32 141.7 77 81.8
Pahal.8G201200 Panicum hallii HOM05M005100 ORTHO05M006736 1.3e-32 141.7 77 83.1
Dexi8B01G0010610 Digitaria exilis HOM05M005100 ORTHO05M006736 2.3e-32 141.0 77 81.8
GWHGAORA001707 Cenchrus purpureus HOM05M005100 ORTHO05M006736 3.0e-32 140.6 77 81.8
EJB05_27153 Eragrostis curvula HOM05M005100 ORTHO05M006736 1.1e-31 138.7 77 81.8
Misin10G122800 Miscanthus sinensis HOM05M005100 ORTHO05M006736 1.6e-30 134.8 77 79.2
Seita.8G144200 Setaria italica HOM05M005100 ORTHO05M006736 1.6e-30 134.8 77 80.5
Sevir.8G154200 Setaria viridis HOM05M005100 ORTHO05M006736 1.6e-30 134.8 77 80.5
Zm00001eb197740 Zea mays B73 HOM05M005100 ORTHO05M006736 3.7e-30 133.7 77 77.9
Zm00007a00020720 Zea mays B104 HOM05M005100 ORTHO05M006736 3.7e-30 133.7 77 77.9
TraesCS4A03G0331100 Triticum aestivum HOM05M005100 ORTHO05M006736 6.3e-30 132.9 73 82.2
TRIDC4AG021200 Triticum dicoccoides HOM05M005100 ORTHO05M006736 6.3e-30 132.9 73 82.2
TRITD4Av1G083990 Triticum turgidum HOM05M005100 ORTHO05M006736 6.3e-30 132.9 73 82.2
Bradi4g16893 Brachypodium distachyon HOM05M005100 ORTHO05M006736 1.8e-29 131.3 77 79.2
Sspon.06G0032250-1P Saccharum spontaneum HOM05M005100 ORTHO05M006736 2.4e-29 131.0 77 77.9
Sspon.06G0032250-1C Saccharum spontaneum HOM05M005100 ORTHO05M006736 4.1e-29 130.2 77 76.6
AET4Gv20411200 Aegilops tauschii HOM05M005100 ORTHO05M006736 1.2e-28 128.6 73 79.5
TraesCS4B03G0371800 Triticum aestivum HOM05M005100 ORTHO05M006736 1.2e-28 128.6 73 79.5
TRIDC4BG029010 Triticum dicoccoides HOM05M005100 ORTHO05M006736 1.2e-28 128.6 73 79.5
TRITD4Bv1G095910 Triticum turgidum HOM05M005100 ORTHO05M006736 1.2e-28 128.6 73 79.5
Zjn_sc00094.1.g00670.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005100 ORTHO05M006736 1.2e-28 128.6 75 77.3
GWHGASIY019663 Secale cereale HOM05M005100 ORTHO05M006736 1.0e-27 125.6 73 76.7
Horvu_MOREX_4H01G226800 Hordeum vulgare HOM05M005100 ORTHO05M006736 8.5e-27 122.5 73 76.7
DDU049G0374 Dioscorea dumetorum HOM05M005100 ORTHO05M006736 4.3e-23 110.2 71 69.0
DDU362G0003 Dioscorea dumetorum HOM05M005100 ORTHO05M006736 4.3e-23 110.2 71 69.0
HPP92_021630 Vanilla planifolia HOM05M005100 ORTHO05M006736 1.3e-22 108.6 73 67.1
HPP92_021688 Vanilla planifolia HOM05M005100 ORTHO05M006736 1.7e-22 108.2 73 67.1
Aco016158 Ananas comosus HOM05M005100 ORTHO05M006736 2.2e-22 107.8 74 66.2
CALSI_Maker00039148 Calamus simplicifolius HOM05M005100 ORTHO05M006736 2.8e-22 107.5 73 67.1
evm.TU.AsparagusV1_09.1553.V1.1 Asparagus officinalis HOM05M005100 ORTHO05M006736 4.1e-21 103.6 73 61.6
Ma03_g19350 Musa acuminata HOM05M005100 ORTHO05M006736 4.5e-20 100.1 73 61.6
Glyma.16G044400 Glycine max HOM05M005100 ORTHO05M006736 5.9e-20 99.8 71 62.0
Potri.014G141100 Populus trichocarpa HOM05M005100 ORTHO05M006736 7.7e-20 99.4 71 60.6
Asa8G04292 Allium sativum HOM05M005100 ORTHO05M006736 6.5e-19 96.3 69 62.3
ATR0582G201 Amborella trichopoda HOM05M005100 ORTHO05M006736 6.5e-19 96.3 71 60.6
MBI07_g11062_MAGBIO Magnolia biondii HOM05M005100 ORTHO05M006736 1.4e-18 95.1 71 59.2
Glyma.19G107500 Glycine max HOM05M005100 ORTHO05M006736 2.5e-18 94.4 71 56.3
Spipo4G0029100 Spirodela polyrhiza HOM05M005100 ORTHO05M006736 3.2e-18 94.0 73 57.5
TraesCS4D03G0393200 Triticum aestivum HOM05M005100 ORTHO05M006736 7.2e-18 92.8 55 78.2
Solyc02g094600.2 Solanum lycopersicum HOM05M005100 ORTHO05M006736 1.5e-15 85.1 71 52.1
SEGI_28776 Sequoiadendron giganteum HOM05M005100 ORTHO05M006736 2.0e-15 84.7 71 53.5
AT1G12930 Arabidopsis thaliana HOM05M005100 ORTHO05M006736 1.7e-14 81.6 75 56.0
Mapoly0055s0098 Marchantia polymorpha HOM05M005100 ORTHO05M006736 1.8e-13 78.2 70 54.3
Pp3c10_7760 Physcomitrium patens HOM05M005100 ORTHO05M006736 4.5e-12 73.6 81 46.9
HPP92_021716 Vanilla planifolia HOM05M005100 ORTHO05M006736 2.2e-11 71.2 51 62.7
Pp3c14_8290 Physcomitrium patens HOM05M005100 ORTHO05M006736 3.8e-11 70.5 81 43.2
Pp3c14_8293 Physcomitrium patens HOM05M005100 ORTHO05M006736 3.8e-11 70.5 81 43.2
Zosma02g23090 Zostera marina HOM05M005100 ORTHO05M006736 5.0e-11 70.1 62 50.0
CDE05G0125 Ceratophyllum demersum HOM05M005100 ORTHO05M006736 2.0e-07 58.2 68 41.2


User provided reference genes

Program Settings