Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0538900 Oryza sativa ssp. japonica HOM05M003576 ORTHO05M005245 5.4e-292 1006.1 495 100.0
OsR498G1120292700.01 Oryza sativa ssp. indica HOM05M003576 ORTHO05M005245 2.0e-278 961.1 473 100.0
OsKitaake11g155400 Oryza sativa Kitaake HOM05M003576 ORTHO05M005245 1.7e-277 958.0 473 99.8
OB02G16460 Oryza brachyantha HOM05M003576 ORTHO05M005245 1.8e-271 937.9 473 97.3
GWHGAZTO016964 Oryza alta HOM05M003576 ORTHO05M005245 2.6e-270 934.1 473 96.8
OsKitaake02g073500 Oryza sativa Kitaake HOM05M003576 ORTHO05M005245 2.6e-270 934.1 473 96.8
Os02g0194100 Oryza sativa ssp. japonica HOM05M003576 ORTHO05M005245 2.6e-270 934.1 473 96.8
GWHGAZTO068707 Oryza alta HOM05M003576 ORTHO05M005245 1.2e-267 925.2 494 93.1
Sobic.004G078000 Sorghum bicolor HOM05M003576 ORTHO05M005245 1.0e-266 922.2 473 95.1
Misin07G074000 Miscanthus sinensis HOM05M003576 ORTHO05M005245 1.3e-266 921.8 473 95.1
Zm00001eb206100 Zea mays B73 HOM05M003576 ORTHO05M005245 1.3e-266 921.8 473 95.1
Sspon.04G0015990-2B Saccharum spontaneum HOM05M003576 ORTHO05M005245 2.3e-266 921.0 473 94.9
Misin08G094500 Miscanthus sinensis HOM05M003576 ORTHO05M005245 3.0e-266 920.6 473 94.7
Seita.1G051300 Setaria italica HOM05M003576 ORTHO05M005245 1.9e-265 917.9 473 94.5
Sevir.1G050500 Setaria viridis HOM05M003576 ORTHO05M005245 1.9e-265 917.9 473 94.5
Pahal.1G071300 Panicum hallii HOM05M003576 ORTHO05M005245 3.3e-265 917.1 473 94.5
TraesCS6B03G0500100 Triticum aestivum HOM05M003576 ORTHO05M005245 3.3e-265 917.1 473 94.1
TRIDC6BG029230 Triticum dicoccoides HOM05M003576 ORTHO05M005245 3.3e-265 917.1 473 94.1
TRIDC6AG023920 Triticum dicoccoides HOM05M003576 ORTHO05M005245 2.1e-264 914.4 473 93.9
TRITD6Av1G069490 Triticum turgidum HOM05M003576 ORTHO05M005245 2.1e-264 914.4 473 93.9
GWHGASIY031594 Secale cereale HOM05M003576 ORTHO05M005245 2.8e-264 914.1 473 93.7
TRITD6Bv1G074910 Triticum turgidum HOM05M003576 ORTHO05M005245 8.1e-264 912.5 473 93.7
Zm00001eb236450 Zea mays B73 HOM05M003576 ORTHO05M005245 8.1e-264 912.5 473 94.1
AET6Gv20422500 Aegilops tauschii HOM05M003576 ORTHO05M005245 1.8e-263 911.4 473 93.2
TraesCS6D03G0347100 Triticum aestivum HOM05M003576 ORTHO05M005245 1.8e-263 911.4 473 93.2
Horvu_MOREX_6H01G225400 Hordeum vulgare HOM05M003576 ORTHO05M005245 2.4e-263 911.0 473 93.4
Bradi3g06930 Brachypodium distachyon HOM05M003576 ORTHO05M005245 9.0e-263 909.1 473 93.2
Zjn_sc00013.1.g01230.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003576 ORTHO05M005245 9.0e-263 909.1 473 93.2
EJB05_24677 Eragrostis curvula HOM05M003576 ORTHO05M005245 2.6e-262 907.5 473 92.8
TraesCS6A03G0410700 Triticum aestivum HOM05M003576 ORTHO05M005245 2.6e-262 907.5 473 93.7
Ot_Chr4_g08089 Oropetium thomaeum HOM05M003576 ORTHO05M005245 5.8e-262 906.4 473 92.6
V3.Lp_chr6_0G6128 Lolium perenne HOM05M003576 ORTHO05M005245 2.9e-261 904.0 473 93.2
Zm00007a00013711 Zea mays B104 HOM05M003576 ORTHO05M005245 4.9e-245 850.1 473 89.0
PH02Gene34121 Phyllostachys edulis HOM05M003576 ORTHO05M005245 1.1e-244 849.0 442 93.7
evm.TU.AsparagusV1_08.3476.V1.1 Asparagus officinalis HOM05M003576 ORTHO05M005245 5.5e-244 846.7 471 86.4
Aco015687 Ananas comosus HOM05M003576 ORTHO05M005245 3.9e-242 840.5 504 80.8
GWHGAORA058707 Cenchrus purpureus HOM05M003576 ORTHO05M005245 1.5e-241 838.6 473 87.7
p5.00_sc00020_p0153 Elaeis guineensis HOM05M003576 ORTHO05M005245 3.3e-241 837.4 471 84.7
Asa5G04770 Allium sativum HOM05M003576 ORTHO05M005245 2.4e-239 831.2 471 84.1
MBI01_g01369_MAGBIO Magnolia biondii HOM05M003576 ORTHO05M005245 2.2e-237 824.7 472 83.9
evm.TU.AsparagusV1_02.156.V1.1 Asparagus officinalis HOM05M003576 ORTHO05M005245 2.9e-237 824.3 471 83.9
DDU047G0010 Dioscorea dumetorum HOM05M003576 ORTHO05M005245 8.4e-237 822.8 517 77.4
CALSI_Maker00039861 Calamus simplicifolius HOM05M003576 ORTHO05M005245 3.2e-236 820.8 491 80.9
MBI04_g33965_MAGBIO Magnolia biondii HOM05M003576 ORTHO05M005245 1.6e-235 818.5 472 83.1
ATR0006G067 Amborella trichopoda HOM05M003576 ORTHO05M005245 3.3e-233 810.8 473 82.0
AT2G44350 Arabidopsis thaliana HOM05M003576 ORTHO05M005245 4.3e-233 810.4 473 81.6
Zm00001eb206090 Zea mays B73 HOM05M003576 ORTHO05M005245 1.8e-231 805.1 473 82.5
HPP92_022742 Vanilla planifolia HOM05M003576 ORTHO05M005245 9.0e-231 802.7 457 83.4
GWHGAZTO064337 Oryza alta HOM05M003576 ORTHO05M005245 2.9e-229 797.7 400 98.8
Zosma02g23280 Zostera marina HOM05M003576 ORTHO05M005245 5.0e-229 797.0 476 80.3
DDU014G0024 Dioscorea dumetorum HOM05M003576 ORTHO05M000452 1.1e-228 795.8 589 68.4
Sspon.04G0015990-1A Saccharum spontaneum HOM05M003576 ORTHO05M005245 1.4e-228 795.4 473 84.8
Potri.001G230500 Populus trichocarpa HOM05M003576 ORTHO05M005245 9.4e-228 792.7 477 80.9
Spipo5G0015300 Spirodela polyrhiza HOM05M003576 ORTHO05M005245 2.9e-221 771.2 471 77.9
Asa6G00850 Allium sativum HOM05M003576 ORTHO05M005245 1.4e-220 768.8 471 79.8
Solyc01g073740.4 Solanum lycopersicum HOM05M003576 ORTHO05M005245 5.1e-218 760.4 474 77.0
SEGI_39166 Sequoiadendron giganteum HOM05M003576 ORTHO05M005245 3.3e-217 757.7 472 76.5
CDE06G2277 Ceratophyllum demersum HOM05M003576 ORTHO05M005245 4.4e-217 757.3 433 82.0
AT3G60100 Arabidopsis thaliana HOM05M003576 ORTHO05M005245 7.0e-215 750.0 466 78.3
ATR0626G367 Amborella trichopoda HOM05M003576 ORTHO05M005245 3.5e-214 747.7 437 80.3
Dexi1A01G0007640 Digitaria exilis HOM05M003576 ORTHO05M005245 4.0e-210 734.2 473 79.5
Dexi1B01G0007470 Digitaria exilis HOM05M003576 ORTHO05M005245 8.8e-210 733.0 473 79.3
Zm00007a00013710 Zea mays B104 HOM05M003576 ORTHO05M005245 8.8e-210 733.0 473 78.2
Glyma.15G268500 Glycine max HOM05M003576 ORTHO05M005245 1.5e-204 715.7 472 70.8
Glyma.08G157700 Glycine max HOM05M003576 ORTHO05M005245 4.2e-204 714.1 472 70.6
Zm00007a00019687 Zea mays B104 HOM05M003576 ORTHO05M005245 4.8e-200 700.7 443 79.5
Mapoly0200s0007 Marchantia polymorpha HOM05M003576 ORTHO05M005245 1.7e-197 692.2 462 70.1
Mapoly0063s0010 Marchantia polymorpha HOM05M003576 ORTHO05M005245 2.9e-197 691.4 463 70.0
Mapoly0216s0011 Marchantia polymorpha HOM05M003576 ORTHO05M005245 5.0e-197 690.6 462 69.9
Mapoly0383s0001 Marchantia polymorpha HOM05M003576 ORTHO05M005245 1.9e-196 688.7 463 70.0
EJB05_24674 Eragrostis curvula HOM05M003576 ORTHO05M011243 4.7e-195 684.1 404 83.7
Pp3c13_21410 Physcomitrium patens HOM05M003576 ORTHO05M005245 1.0e-194 682.9 445 71.7
AagrBONN_evm.TU.Sc2ySwM_117.1175 Anthoceros agrestis HOM05M003576 ORTHO05M005245 1.3e-192 676.0 457 70.0
AagrBONN_evm.TU.Sc2ySwM_228.5639 Anthoceros agrestis HOM05M003576 ORTHO05M005245 1.8e-191 672.2 433 72.3
SMO118G0428 Selaginella moellendorffii HOM05M003576 ORTHO05M005245 7.7e-190 666.8 431 71.5
Pp3c1_40030 Physcomitrium patens HOM05M003576 ORTHO05M005245 6.8e-178 627.1 443 67.5
CALSI_Maker00004936 Calamus simplicifolius HOM05M003576 ORTHO05M005245 1.5e-177 625.9 398 76.1
CDE07G1107 Ceratophyllum demersum HOM05M003576 ORTHO05M005245 7.0e-175 617.1 407 74.0
p5.00_sc00096_p0022 Elaeis guineensis HOM05M003576 ORTHO05M005245 2.0e-174 615.5 338 86.7
Cre12.g514750 Chlamydomonas reinhardtii HOM05M003576 ORTHO05M005245 2.6e-169 598.6 443 63.9
CBR_g11008 Chara braunii HOM05M003576 ORTHO05M005245 1.5e-164 582.8 478 58.2
MCO01G768 Micromonas commoda HOM05M003576 ORTHO05M005245 4.9e-160 567.8 430 62.1
PRCOL_00005650 Prasinoderma coloniale HOM05M003576 ORTHO05M005245 5.1e-149 531.2 421 62.0
Zjn_sc00086.1.g02000.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003576 ORTHO05M005245 3.0e-141 505.4 473 60.0
HPP92_022773 Vanilla planifolia HOM05M003576 ORTHO05M005245 5.1e-141 504.6 353 70.0
EJB05_55544 Eragrostis curvula HOM05M003576 ORTHO05M015826 2.6e-137 492.3 297 82.5
Ot_Chr1_g18473 Oropetium thomaeum HOM05M003576 ORTHO05M024975 1.9e-116 422.9 228 88.6
DDU011G0012 Dioscorea dumetorum HOM05M003576 ORTHO05M005245 5.3e-114 414.8 422 55.2
OsR498G0203144000.01 Oryza sativa ssp. indica HOM05M003576 ORTHO05M015826 3.2e-103 379.0 204 93.6
ATR0626G052 Amborella trichopoda HOM05M003576 ORTHO05M005245 9.8e-76 287.7 190 76.3
ATR0626G287 Amborella trichopoda HOM05M003576 ORTHO05M015826 1.5e-52 210.7 125 81.6
AagrBONN_evm.TU.Sc2ySwM_344.3341 Anthoceros agrestis HOM05M003576 ORTHO05M005245 2.0e-52 210.3 185 55.7
p5.00_sc00096_p0023 Elaeis guineensis HOM05M003576 ORTHO05M015826 2.0e-52 210.3 135 74.8
Pp3c12_7330 Physcomitrium patens HOM05M003576 ORTHO05M005245 6.0e-41 172.2 462 29.0
Potri.009G023900 Populus trichocarpa HOM05M003576 ORTHO05M024975 1.7e-32 144.1 73 89.0
CALSI_Maker00036827 Calamus simplicifolius HOM05M003576 ORTHO05M015826 7.3e-31 138.7 84 76.2
CBR_g4482 Chara braunii HOM05M003766 ORTHO05M004693 5.8e-28 129.0 400 28.2
Asa8G02815 Allium sativum HOM05M003766 ORTHO05M004693 9.9e-28 128.3 390 27.2
Spipo14G0029700 Spirodela polyrhiza HOM05M003766 ORTHO05M004693 9.9e-28 128.3 392 26.5
Cre03.g149100 Chlamydomonas reinhardtii HOM05M003766 ORTHO05M004693 1.3e-27 127.9 373 26.5
AagrBONN_evm.TU.Sc2ySwM_368.567 Anthoceros agrestis HOM05M003766 ORTHO05M004693 2.9e-27 126.7 390 27.2
MCO05G529 Micromonas commoda HOM05M003766 ORTHO05M004693 2.9e-27 126.7 398 28.4
Glyma.02G288500 Glycine max HOM05M003766 ORTHO05M004693 3.8e-27 126.3 393 26.7
Glyma.14G026400 Glycine max HOM05M003766 ORTHO05M004693 3.8e-27 126.3 393 26.5
AT2G42790 Arabidopsis thaliana HOM05M003766 ORTHO05M004693 4.9e-27 125.9 392 26.5
HPP92_006375 Vanilla planifolia HOM05M003766 ORTHO05M004693 8.4e-27 125.2 392 26.5
SMO367G0491 Selaginella moellendorffii HOM05M003766 ORTHO05M004693 1.1e-26 124.8 392 26.8
CALSI_Maker00037035 Calamus simplicifolius HOM05M003766 ORTHO05M004693 1.4e-26 124.4 390 25.9
Potri.014G141900 Populus trichocarpa HOM05M003766 ORTHO05M004693 1.4e-26 124.4 392 25.8
evm.TU.AsparagusV1_Unassigned.46.V1.1 Asparagus officinalis HOM05M003766 ORTHO05M004693 1.9e-26 124.0 390 25.9
Mapoly0091s0007 Marchantia polymorpha HOM05M003766 ORTHO05M004693 2.4e-26 123.6 388 27.1
p5.00_sc00059_p0099 Elaeis guineensis HOM05M003766 ORTHO05M004693 3.2e-26 123.2 390 25.9
Potri.016G089300 Populus trichocarpa HOM05M003766 ORTHO05M004693 3.2e-26 123.2 466 25.3
Pp3c12_7740 Physcomitrium patens HOM05M003766 ORTHO05M004693 4.2e-26 122.9 397 26.2
Glyma.08G311200 Glycine max HOM05M003766 ORTHO05M004693 5.4e-26 122.5 393 26.0
Solyc12g011000.2 Solanum lycopersicum HOM05M003766 ORTHO05M004693 5.4e-26 122.5 390 26.4
Zosma01g23350 Zostera marina HOM05M003766 ORTHO05M004693 5.4e-26 122.5 390 25.1
MBI06_g08524_MAGBIO Magnolia biondii HOM05M003766 ORTHO05M004693 7.1e-26 122.1 390 26.2
OsKitaake02g099900 Oryza sativa Kitaake HOM05M003766 ORTHO05M004693 7.1e-26 122.1 390 25.4
Os02g0232400 Oryza sativa ssp. japonica HOM05M003766 ORTHO05M004693 7.1e-26 122.1 390 25.4
Pp3c23_9030 Physcomitrium patens HOM05M003766 ORTHO05M004693 7.1e-26 122.1 393 27.2
OsR498G0203286100.01 Oryza sativa ssp. indica HOM05M003766 ORTHO05M004693 9.3e-26 121.7 390 25.4
Aco024619 Ananas comosus HOM05M003766 ORTHO05M004693 1.2e-25 121.3 390 25.9
Bradi3g08910 Brachypodium distachyon HOM05M003766 ORTHO05M004693 1.2e-25 121.3 390 25.6
OB02G18700 Oryza brachyantha HOM05M003766 ORTHO05M004693 1.2e-25 121.3 390 25.1
ATR0213G001 Amborella trichopoda HOM05M003766 ORTHO05M004693 1.6e-25 120.9 392 26.0
AT3G58750 Arabidopsis thaliana HOM05M003766 ORTHO05M004693 1.6e-25 120.9 390 26.2
Ma10_g14270 Musa acuminata HOM05M003766 ORTHO05M004693 1.6e-25 120.9 390 25.6
GWHGAZTO069051 Oryza alta HOM05M003766 ORTHO05M004693 2.1e-25 120.6 390 25.4
V3.Lp_chr6_0G7552 Lolium perenne HOM05M003766 ORTHO05M004693 2.7e-25 120.2 390 25.9
GWHGAZTO017327 Oryza alta HOM05M003766 ORTHO05M004693 2.7e-25 120.2 390 25.4
GWHGASIY042946 Secale cereale HOM05M003766 ORTHO05M004693 4.6e-25 119.4 390 25.1
TRITD5Bv1G207280 Triticum turgidum HOM05M003766 ORTHO05M004693 4.6e-25 119.4 390 25.1
CALSI_Maker00027829 Calamus simplicifolius HOM05M003766 ORTHO05M004693 6.0e-25 119.0 357 25.8
GWHGASIY029037 Secale cereale HOM05M003766 ORTHO05M004693 6.0e-25 119.0 390 25.1
TraesCS5B03G1027300 Triticum aestivum HOM05M003766 ORTHO05M004693 6.0e-25 119.0 390 25.1
TRIDC5BG063980 Triticum dicoccoides HOM05M003766 ORTHO05M004693 6.0e-25 119.0 390 25.1
MBI07_g00476_MAGBIO Magnolia biondii HOM05M003766 ORTHO05M004693 7.9e-25 118.6 390 26.4
p5.00_sc00135_p0033 Elaeis guineensis HOM05M003766 ORTHO05M004693 1.3e-24 117.9 390 24.9
Glyma.18G104400 Glycine max HOM05M003766 ORTHO05M004693 2.3e-24 117.1 353 25.5
PRCOL_00002388 Prasinoderma coloniale HOM05M003766 ORTHO05M004693 2.3e-24 117.1 397 28.0
Mapoly0383s0002 Marchantia polymorpha HOM05M003576 ORTHO05M024975 3.9e-24 116.3 98 60.2
Solyc07g055840.3 Solanum lycopersicum HOM05M003766 ORTHO05M004693 5.1e-24 115.9 353 25.2
TraesCS5A03G0978700 Triticum aestivum HOM05M003766 ORTHO05M004693 5.1e-24 115.9 390 24.6
TRIDC5AG059800 Triticum dicoccoides HOM05M003766 ORTHO05M004693 5.1e-24 115.9 390 24.6
TRITD5Av1G210970 Triticum turgidum HOM05M003766 ORTHO05M004693 5.1e-24 115.9 390 24.6
Aco004295 Ananas comosus HOM05M003766 ORTHO05M004693 1.5e-23 114.4 390 25.9
MCO02G216 Micromonas commoda HOM05M003766 ORTHO05M004693 4.0e-21 106.3 332 27.4
evm.TU.AsparagusV1_04.3207.V1.1 Asparagus officinalis HOM05M003576 ORTHO05M015826 5.3e-21 105.9 81 69.1
evm.TU.AsparagusV1_05.3120.V1.1 Asparagus officinalis HOM05M003576 ORTHO05M005245 3.4e-20 103.2 65 73.8
TRITD3Bv1G026020 Triticum turgidum HOM05M004023 ORTHO05M014154 1.3e-19 101.3 198 34.8
DDU314G0437 Dioscorea dumetorum HOM05M003766 ORTHO05M004693 6.4e-19 99.0 386 25.4
GWHGASIY028039 Secale cereale HOM05M003766 ORTHO05M004693 1.4e-18 97.8 307 24.4
CALSI_Maker00049604 Calamus simplicifolius HOM05M003766 ORTHO05M004693 2.1e-17 94.0 346 24.0
GWHGAZTO027182 Oryza alta HOM05M000166 ORTHO05M000106 1.8e-16 90.9 101 53.5
PH02Gene10303 Phyllostachys edulis HOM05M003576 ORTHO05M012400 3.0e-16 90.1 52 86.5
Os11g0623601 Oryza sativa ssp. japonica HOM05M003576 ORTHO05M020431 6.7e-16 89.0 60 70.0
PRCOL_00003102 Prasinoderma coloniale HOM05M003766 ORTHO05M004693 1.1e-15 88.2 333 25.2
Misin18G018200 Miscanthus sinensis HOM05M003576 ORTHO05M015826 6.2e-14 82.4 44 88.6
evm.TU.AsparagusV1_09.1559.V1.1 Asparagus officinalis HOM05M003576 ORTHO05M005245 4.5e-12 76.3 65 63.1
SMO115G0153 Selaginella moellendorffii HOM05M003766 ORTHO05M004693 1.7e-11 74.3 308 24.4
OsR498G1120538200.01 Oryza sativa ssp. indica HOM05M003576 ORTHO05M005245 2.1e-09 67.4 42 71.4
PH02Gene42387 Phyllostachys edulis HOM05M004632 ORTHO05M005283 1.6e-06 57.8 28 92.9
AT2G11270 Arabidopsis thaliana HOM05M003576 ORTHO05M015826 2.8e-06 57.0 34 79.4


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