Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g142600 Oryza sativa Kitaake HOM05M005080 ORTHO05M006204 0.0e+00 1118.2 570 100.0
Os11g0507400 Oryza sativa ssp. japonica HOM05M005080 ORTHO05M006204 0.0e+00 1118.2 570 100.0
GWHGAZTO012099 Oryza alta HOM05M005080 ORTHO05M006204 6.2e-308 1059.3 567 95.4
GWHGAZTO064145 Oryza alta HOM05M005080 ORTHO05M006204 9.5e-301 1035.4 567 91.4
OsR498G1120206200.01 Oryza sativa ssp. indica HOM05M005080 ORTHO05M006204 1.2e-282 975.3 475 100.0
OB11G21400 Oryza brachyantha HOM05M005080 ORTHO05M006204 1.1e-272 942.2 564 86.0
PH02Gene31777 Phyllostachys edulis HOM05M005080 ORTHO05M006204 1.5e-258 895.2 489 88.3
Misin10G086800 Miscanthus sinensis HOM05M005080 ORTHO05M006204 3.0e-246 854.4 568 75.4
EJB05_27813 Eragrostis curvula HOM05M005080 ORTHO05M006204 4.1e-243 844.0 600 74.0
Bradi4g18377 Brachypodium distachyon HOM05M005080 ORTHO05M006204 2.0e-242 841.6 488 83.0
Seita.8G129800 Setaria italica HOM05M005080 ORTHO05M006204 2.9e-241 837.8 575 74.8
Sevir.8G137100 Setaria viridis HOM05M005080 ORTHO05M006204 2.9e-241 837.8 575 74.8
Pahal.8G184000 Panicum hallii HOM05M005080 ORTHO05M006204 5.0e-241 837.0 570 75.4
GWHGAORA001835 Cenchrus purpureus HOM05M005080 ORTHO05M006204 9.4e-240 832.8 571 74.6
GWHGAORA001832 Cenchrus purpureus HOM05M005080 ORTHO05M006204 1.4e-238 828.9 571 74.4
TraesCS7D03G1029000 Triticum aestivum HOM05M005080 ORTHO05M006204 4.8e-236 820.5 591 71.7
GWHGASIY041021 Secale cereale HOM05M005080 ORTHO05M006204 9.1e-235 816.2 598 70.7
TraesCS7B03G0924700 Triticum aestivum HOM05M005080 ORTHO05M006204 2.0e-234 815.1 598 69.6
TRITD7Bv1G187620 Triticum turgidum HOM05M005080 ORTHO05M006204 5.9e-234 813.5 598 69.6
Sspon.06G0032500-1P Saccharum spontaneum HOM05M005080 ORTHO05M006204 7.7e-234 813.1 554 73.8
Horvu_MOREX_7H01G609400 Hordeum vulgare HOM05M005080 ORTHO05M006204 1.3e-233 812.4 482 81.1
EJB05_27820 Eragrostis curvula HOM05M005080 ORTHO05M006204 2.5e-232 808.1 566 74.0
TRIDC7BG055110 Triticum dicoccoides HOM05M005080 ORTHO05M006204 2.5e-232 808.1 557 74.1
Zm00007a00040565 Zea mays B104 HOM05M005080 ORTHO05M006204 3.4e-229 797.7 576 71.4
Sspon.06G0032500-1C Saccharum spontaneum HOM05M005080 ORTHO05M006204 3.4e-221 771.2 573 70.2
GWHGAORA043497 Cenchrus purpureus HOM05M005080 ORTHO05M006204 1.6e-218 762.3 576 70.1
GWHGAORA001837 Cenchrus purpureus HOM05M005080 ORTHO05M006204 1.4e-214 749.2 578 67.5
Sspon.06G0032500-2D Saccharum spontaneum HOM05M005080 ORTHO05M006204 2.8e-212 741.5 553 68.9
GWHGAORA043499 Cenchrus purpureus HOM05M005080 ORTHO05M006204 3.0e-201 704.9 564 65.4
Sspon.06G0032480-1C Saccharum spontaneum HOM05M005080 ORTHO05M006204 7.5e-197 690.3 448 75.2
p5.00_sc00057_p0033 Elaeis guineensis HOM05M005080 ORTHO05M006204 1.3e-193 679.5 494 66.8
Ma11_g09540 Musa acuminata HOM05M005080 ORTHO05M006204 3.1e-190 668.3 581 60.4
Asa4G04065 Allium sativum HOM05M005080 ORTHO05M006204 3.0e-185 651.7 473 63.8
evm.TU.AsparagusV1_09.1426.V1.1 Asparagus officinalis HOM05M005080 ORTHO05M006204 7.6e-181 637.1 503 61.8
Aco003628 Ananas comosus HOM05M005080 ORTHO05M006204 5.4e-179 630.9 480 64.8
Potri.001G325500 Populus trichocarpa HOM05M005080 ORTHO05M006204 1.0e-177 626.7 478 63.2
Zjn_sc00130.1.g00350.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005080 ORTHO05M006204 6.9e-174 614.0 388 76.5
ATR0582G106 Amborella trichopoda HOM05M005080 ORTHO05M006204 1.2e-173 613.2 477 61.4
Glyma.16G052500 Glycine max HOM05M005080 ORTHO05M006204 2.4e-171 605.5 469 61.6
TRITD7Av1G238430 Triticum turgidum HOM05M005080 ORTHO05M006204 7.9e-170 600.5 462 69.5
TraesCS7A03G1079200 Triticum aestivum HOM05M005080 ORTHO05M006204 1.7e-169 599.4 462 69.3
Seita.8G129600 Setaria italica HOM05M005080 ORTHO05M006204 8.7e-169 597.0 388 72.4
Zosma05g01420 Zostera marina HOM05M005080 ORTHO05M006204 9.0e-166 587.0 478 60.5
Solyc02g082210.4 Solanum lycopersicum HOM05M005080 ORTHO05M006204 2.0e-165 585.9 475 59.4
Glyma.16G146100 Glycine max HOM05M005080 ORTHO05M006204 3.8e-164 581.6 532 55.8
AT3G26950 Arabidopsis thaliana HOM05M005080 ORTHO05M006204 9.6e-160 567.0 477 57.7
CDE06G1277 Ceratophyllum demersum HOM05M005080 ORTHO05M006204 3.2e-155 552.0 488 56.1
CALSI_Maker00010231 Calamus simplicifolius HOM05M005080 ORTHO05M006204 1.8e-153 546.2 395 65.3
DDU049G0506 Dioscorea dumetorum HOM05M005080 ORTHO05M006204 9.0e-150 533.9 427 62.1
Sobic.005G123400 Sorghum bicolor HOM05M005080 ORTHO05M006204 7.4e-144 514.2 395 68.9
Dexi8A01G0010620 Digitaria exilis HOM05M005080 ORTHO05M006204 5.3e-142 508.1 304 79.3
DexiUA01G0023780 Digitaria exilis HOM05M005080 ORTHO05M006204 5.3e-142 508.1 304 79.3
Dexi8B01G0009480 Digitaria exilis HOM05M005080 ORTHO05M006204 3.8e-140 501.9 322 75.8
Sevir.8G136900 Setaria viridis HOM05M005080 ORTHO05M006204 3.0e-129 465.7 317 70.7
Dexi8B01G0009450 Digitaria exilis HOM05M005080 ORTHO05M006204 5.3e-126 454.9 322 67.1
SMO180G0002 Selaginella moellendorffii HOM05M005080 ORTHO05M006204 4.7e-122 441.8 438 49.1
AET7Gv21071600 Aegilops tauschii HOM05M005080 ORTHO05M006204 4.5e-117 425.2 274 74.5
Pp3c1_35010 Physcomitrium patens HOM05M005080 ORTHO05M006204 5.5e-115 418.3 502 44.0
Pp3c21_14570 Physcomitrium patens HOM05M005080 ORTHO05M006204 7.7e-109 397.9 514 42.6
HPP92_009891 Vanilla planifolia HOM05M005080 ORTHO05M006204 1.0e-105 387.5 323 57.3
Glyma.02G065000 Glycine max HOM05M005080 ORTHO05M006204 1.4e-94 350.5 372 52.7
Dexi8A01G0010600 Digitaria exilis HOM05M005080 ORTHO05M006204 9.5e-91 337.8 504 42.9
DexiUA01G0023760 Digitaria exilis HOM05M005080 ORTHO05M006204 9.5e-91 337.8 504 42.9
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05M005080 ORTHO05M006204 3.6e-82 309.3 479 35.9
TRIDC7AG061800 Triticum dicoccoides HOM05M005080 ORTHO05M006204 1.1e-81 307.8 168 85.7
HPP92_009881 Vanilla planifolia HOM05M005080 ORTHO05M006204 1.0e-76 291.2 212 65.1
Spipo4G0058900 Spirodela polyrhiza HOM05M005080 ORTHO05M006204 1.4e-62 244.2 201 53.7
Sspon.06G0032480-2D Saccharum spontaneum HOM05M000915 ORTHO05M006204 1.6e-61 240.7 402 42.5
Spipo4G0058800 Spirodela polyrhiza HOM05M005080 ORTHO05M006204 1.3e-60 237.7 171 64.3
TRIDC1AG008380 Triticum dicoccoides HOM05M005080 ORTHO05M006204 2.3e-60 236.9 164 71.3
HPP92_009897 Vanilla planifolia HOM05M005080 ORTHO05M006204 3.6e-58 229.6 158 68.4
CDE05G2066 Ceratophyllum demersum HOM05M005080 ORTHO05M006204 2.2e-55 220.3 146 69.2
CBR_g57654 Chara braunii HOM05M000006 ORTHO05M000001 2.7e-37 160.2 187 42.2
TRIDC1BG010480 Triticum dicoccoides HOM05M005080 ORTHO05M006204 1.9e-27 127.5 92 66.3
Glyma.19G097001 Glycine max HOM05M005080 ORTHO05M006204 1.9e-22 110.9 75 69.3
Bradi3g60628 Brachypodium distachyon HOM05M007300 ORTHO05M006383 9.4e-22 108.6 60 78.3
Glyma.19G097101 Glycine max HOM05M005080 ORTHO05M006204 8.8e-20 102.1 86 61.6
Zjn_sc00130.1.g00360.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M005080 ORTHO05M006204 1.8e-17 94.4 125 56.8
Dexi8B01G0009460 Digitaria exilis HOM05M005080 ORTHO05M006204 1.1e-09 68.6 119 43.7
Dexi8A01G0010630 Digitaria exilis HOM05M005080 ORTHO05M006204 1.4e-09 68.2 121 47.1
DexiUA01G0023790 Digitaria exilis HOM05M005080 ORTHO05M006204 1.4e-09 68.2 121 47.1
Dexi8B01G0009490 Digitaria exilis HOM05M005080 ORTHO05M006204 3.1e-09 67.0 128 45.3
Sevir.1G008600 Setaria viridis HOM05M007300 ORTHO05M006383 2.6e-08 63.9 47 61.7
HPP92_009880 Vanilla planifolia HOM05M005080 ORTHO05M006204 4.5e-08 63.2 69 44.9
SEGI_15377 Sequoiadendron giganteum HOM05M005080 ORTHO05M006204 2.9e-07 60.5 68 47.1


User provided reference genes

Program Settings