Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0488500 Oryza sativa ssp. japonica HOM05M005962 ORTHO05M007703 2.0e-170 601.7 326 100.0
OsKitaake11g136600 Oryza sativa Kitaake HOM05M005962 ORTHO05M007703 1.6e-167 592.0 321 100.0
OsR498G1120155000.01 Oryza sativa ssp. indica HOM05M005962 ORTHO05M007703 1.6e-167 592.0 321 96.9
GWHGAZTO012005 Oryza alta HOM05M005962 ORTHO05M007703 2.5e-152 541.6 323 87.9
GWHGAZTO064051 Oryza alta HOM05M005962 ORTHO05M007703 4.1e-147 524.2 323 85.1
OB11G20900 Oryza brachyantha HOM05M005962 ORTHO05M007703 1.5e-133 479.2 323 80.2
PH02Gene31209 Phyllostachys edulis HOM05M005962 ORTHO05M007703 7.5e-133 476.9 328 75.3
Seita.8G122100 Setaria italica HOM05M005962 ORTHO05M007703 1.2e-130 469.5 326 74.5
Sevir.8G128700 Setaria viridis HOM05M005962 ORTHO05M007703 1.2e-130 469.5 326 74.5
Pahal.8G172400 Panicum hallii HOM05M005962 ORTHO05M007703 4.5e-130 467.6 326 74.8
Misin10G091700 Miscanthus sinensis HOM05M005962 ORTHO05M007703 5.9e-130 467.2 326 75.8
GWHGAORA026431 Cenchrus purpureus HOM05M005962 ORTHO05M007703 1.1e-128 463.0 327 73.4
Misin09G123000 Miscanthus sinensis HOM05M005962 ORTHO05M007703 7.3e-128 460.3 326 74.8
EJB05_27906 Eragrostis curvula HOM05M005962 ORTHO05M007703 1.6e-127 459.1 326 72.7
Sobic.005G116200 Sorghum bicolor HOM05M005962 ORTHO05M007703 3.6e-127 458.0 326 74.2
V3.Lp_chr3_0G3524 Lolium perenne HOM05M005962 ORTHO05M007703 3.0e-126 454.9 325 72.9
Sspon.06G0014200-1A Saccharum spontaneum HOM05M005962 ORTHO05M007703 2.0e-125 452.2 356 69.1
Zm00001eb169540 Zea mays B73 HOM05M005962 ORTHO05M007703 2.6e-125 451.8 325 72.9
Bradi4g39090 Brachypodium distachyon HOM05M005962 ORTHO05M007703 4.4e-125 451.1 326 72.4
TraesCS3D03G0031600 Triticum aestivum HOM05M005962 ORTHO05M007703 9.2e-123 443.4 326 74.5
TraesCS3A03G0056500 Triticum aestivum HOM05M005962 ORTHO05M007703 3.5e-122 441.4 325 72.3
TRITD3Av1G007460 Triticum turgidum HOM05M005962 ORTHO05M007703 3.5e-122 441.4 325 72.3
Horvu_MOREX_3H01G038000 Hordeum vulgare HOM05M005962 ORTHO05M007703 2.3e-121 438.7 326 74.2
GWHGASIY028611 Secale cereale HOM05M005962 ORTHO05M007703 3.0e-121 438.3 325 71.1
TraesCS3B03G0038000 Triticum aestivum HOM05M005962 ORTHO05M007703 3.9e-121 438.0 327 72.8
TRIDC3AG000190 Triticum dicoccoides HOM05M005962 ORTHO05M007703 8.6e-121 436.8 315 73.3
TRITD3Bv1G004590 Triticum turgidum HOM05M005962 ORTHO05M007703 8.6e-121 436.8 326 72.4
TRIDC3BG003030 Triticum dicoccoides HOM05M005962 ORTHO05M007703 2.5e-120 435.3 326 72.1
GWHGASIY012675 Secale cereale HOM05M005962 ORTHO05M007703 6.8e-118 427.2 323 70.0
GWHGASIY012683 Secale cereale HOM05M005962 ORTHO05M007703 9.8e-117 423.3 323 69.3
Aco016068 Ananas comosus HOM05M005962 ORTHO05M007703 6.4e-108 394.0 329 62.6
Aco028307 Ananas comosus HOM05M005962 ORTHO05M007703 2.4e-107 392.1 321 62.9
p5.00_sc00229_p0008 Elaeis guineensis HOM05M005962 ORTHO05M007703 6.4e-100 367.5 320 60.3
evm.TU.AsparagusV1_09.1347.V1.1 Asparagus officinalis HOM05M005962 ORTHO05M007703 1.1e-99 366.7 325 59.1
MBI11_g05329_MAGBIO Magnolia biondii HOM05M005962 ORTHO05M007703 1.9e-99 365.9 324 59.3
Sspon.06G0014200-3C Saccharum spontaneum HOM05M005962 ORTHO05M007703 5.4e-99 364.4 277 71.1
Ma06_g22170 Musa acuminata HOM05M005962 ORTHO05M007703 1.6e-98 362.8 317 60.9
DDU537G0007 Dioscorea dumetorum HOM05M005962 ORTHO05M007703 6.6e-97 357.5 331 57.4
DDU738G0034 Dioscorea dumetorum HOM05M005962 ORTHO05M007703 5.6e-96 354.4 331 57.1
Zosma05g09980 Zostera marina HOM05M005962 ORTHO05M007703 6.2e-95 350.9 319 57.7
Spipo13G0026000 Spirodela polyrhiza HOM05M005962 ORTHO05M007703 1.5e-93 346.3 323 57.3
AT1G11780 Arabidopsis thaliana HOM05M005962 ORTHO05M007703 6.4e-92 340.9 312 56.4
Glyma.18G006200 Glycine max HOM05M005962 ORTHO05M007703 5.4e-91 337.8 311 56.3
Glyma.11G250800 Glycine max HOM05M005962 ORTHO05M007703 9.3e-91 337.0 311 56.3
AET3Gv20038200 Aegilops tauschii HOM05M005962 ORTHO05M007703 3.9e-89 331.6 217 76.5
Potri.003G171900 Populus trichocarpa HOM05M005962 ORTHO05M007703 8.7e-89 330.5 328 55.5
CDE05G3615 Ceratophyllum demersum HOM05M005962 ORTHO05M007703 1.5e-88 329.7 315 55.9
Solyc04g045590.3 Solanum lycopersicum HOM05M005962 ORTHO05M007703 1.5e-85 319.7 326 52.1
ATR0561G191 Amborella trichopoda HOM05M005962 ORTHO05M007703 2.9e-84 315.5 239 64.4
Zjn_sc00054.1.g00920.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005962 ORTHO05M007703 9.0e-78 293.9 324 52.8
SEGI_28427 Sequoiadendron giganteum HOM05M005962 ORTHO05M007703 9.9e-77 290.4 319 50.5
Mapoly0036s0054 Marchantia polymorpha HOM05M005962 ORTHO05M007703 5.6e-72 274.6 376 43.6
SMO196G0120 Selaginella moellendorffii HOM05M005962 ORTHO05M007703 9.6e-72 273.9 316 47.8
AagrBONN_evm.TU.Sc2ySwM_228.5822 Anthoceros agrestis HOM05M005962 ORTHO05M007703 1.6e-71 273.1 316 45.9
Pp3c15_20640 Physcomitrium patens HOM05M005962 ORTHO05M007703 3.7e-71 271.9 358 45.5
Asa8G03804 Allium sativum HOM05M005962 ORTHO05M007703 1.6e-66 256.5 195 63.6
Sspon.06G0014200-2B Saccharum spontaneum HOM05M005962 ORTHO05M007703 6.3e-63 244.6 216 64.8
Sspon.06G0014200-4D Saccharum spontaneum HOM05M005962 ORTHO05M007703 1.1e-62 243.8 216 64.8
Zm00007a00051534 Zea mays B104 HOM05M005962 ORTHO05M007703 5.5e-59 231.5 214 62.1
Zm00007a00041829 Zea mays B104 HOM05M005962 ORTHO05M007703 7.7e-45 184.5 88 97.7
CBR_g32330 Chara braunii HOM05M005962 ORTHO05M007703 4.7e-42 175.3 141 56.0
CALSI_Maker00014886 Calamus simplicifolius HOM05M005962 ORTHO05M007703 7.7e-37 157.9 87 83.9
Cre06.g278198 Chlamydomonas reinhardtii HOM05M005962 ORTHO05M007703 4.4e-32 142.1 186 39.2
p5.00_sc00152_p0004 Elaeis guineensis HOM05M005962 ORTHO05M007703 3.8e-28 129.0 83 72.3
CALSI_Maker00038605 Calamus simplicifolius HOM05M005962 ORTHO05M007703 3.2e-27 125.9 73 82.2
PRCOL_00005324 Prasinoderma coloniale HOM05M005962 ORTHO05M007703 2.8e-23 112.8 141 44.0
MCO14G547 Micromonas commoda HOM05M005962 ORTHO05M007703 1.8e-22 110.2 73 60.3
Asa8G00459 Allium sativum HOM05M005962 ORTHO05M007703 4.5e-21 105.5 62 77.4
Asa6G01596 Allium sativum HOM05M005962 ORTHO05M007703 8.3e-15 84.7 64 60.9
Asa0G02622 Allium sativum HOM05M005962 ORTHO05M007703 7.0e-14 81.6 62 61.3
Dexi8A01G0010120 Digitaria exilis HOM05M005962 ORTHO05M007703 1.6e-10 70.5 98 50.0
Dexi8B01G0009060 Digitaria exilis HOM05M005962 ORTHO05M007703 6.1e-10 68.6 97 49.5
SEGI_16548 Sequoiadendron giganteum HOM05M001987 ORTHO05M002131 5.7e-08 62.0 143 31.5
Asa0G04428 Allium sativum HOM05M001987 ORTHO05M002131 7.5e-08 61.6 135 27.4
Glyma.19G263000 Glycine max HOM05M001987 ORTHO05M002131 1.7e-07 60.5 154 28.6
AET5Gv21090100 Aegilops tauschii HOM05M001987 ORTHO05M002131 2.2e-07 60.1 79 39.2
GWHGAORA020284 Cenchrus purpureus HOM05M001987 ORTHO05M002131 2.2e-07 60.1 79 38.0
Glyma.01G129600 Glycine max HOM05M001987 ORTHO05M002131 2.2e-07 60.1 79 38.0
Zm00001eb212020 Zea mays B73 HOM05M001987 ORTHO05M002131 2.9e-07 59.7 90 37.8
Zm00007a00020097 Zea mays B104 HOM05M001987 ORTHO05M002131 2.9e-07 59.7 90 37.8
Asa4G02797 Allium sativum HOM05M001987 ORTHO05M002131 3.7e-07 59.3 168 26.8
Glyma.20G056000 Glycine max HOM05M001987 ORTHO05M002131 3.7e-07 59.3 154 28.6
TraesCS5B03G1175200 Triticum aestivum HOM05M001987 ORTHO05M002131 6.4e-07 58.5 79 38.0
TRIDC5BG072370 Triticum dicoccoides HOM05M001987 ORTHO05M002131 6.4e-07 58.5 79 38.0
TRITD5Bv1G229160 Triticum turgidum HOM05M001987 ORTHO05M002131 6.4e-07 58.5 79 38.0
MBI15_g40704_MAGBIO Magnolia biondii HOM05M001987 ORTHO05M002131 8.3e-07 58.2 80 37.5
Asa4G06531 Allium sativum HOM05M001987 ORTHO05M002131 1.1e-06 57.8 125 30.4
Asa6G03381 Allium sativum HOM05M001987 ORTHO05M002131 1.1e-06 57.8 82 32.9
ATR0681G237 Amborella trichopoda HOM05M001987 ORTHO05M002131 1.4e-06 57.4 79 36.7
Bradi1g04030 Brachypodium distachyon HOM05M001987 ORTHO05M002131 1.4e-06 57.4 79 38.0
Sobic.001G039100 Sorghum bicolor HOM05M001987 ORTHO05M002131 1.4e-06 57.4 90 36.7
Aco012513 Ananas comosus HOM05M001987 ORTHO05M002131 1.8e-06 57.0 132 31.8
Horvu_MOREX_5H01G663500 Hordeum vulgare HOM05M001987 ORTHO05M002131 1.8e-06 57.0 79 36.7
EJB05_03880 Eragrostis curvula HOM05M001987 ORTHO05M002131 2.4e-06 56.6 79 36.7
TRIDC5AG067190 Triticum dicoccoides HOM05M001987 ORTHO05M002131 2.4e-06 56.6 79 39.2
Asa5G00907 Allium sativum HOM05M001987 ORTHO05M002131 3.2e-06 56.2 79 34.2
Asa6G02123 Allium sativum HOM05M001987 ORTHO05M002131 4.1e-06 55.8 79 34.2
GWHGASIY029683 Secale cereale HOM05M001987 ORTHO05M002131 4.1e-06 55.8 79 38.0
AET5Gv21090400 Aegilops tauschii HOM05M001987 ORTHO05M002131 5.4e-06 55.5 79 36.7
Asa6G00704 Allium sativum HOM05M001987 ORTHO05M002131 5.4e-06 55.5 79 35.4
Asa8G03517 Allium sativum HOM05M001987 ORTHO05M002131 5.4e-06 55.5 135 25.9
V3.Lp_chr4_0G2826 Lolium perenne HOM05M001987 ORTHO05M002131 5.4e-06 55.5 79 36.7
TraesCS5D03G1063100 Triticum aestivum HOM05M001987 ORTHO05M002131 5.4e-06 55.5 79 36.7
Asa8G00051 Allium sativum HOM05M001987 ORTHO05M002131 7.0e-06 55.1 79 35.4
Asa2G06662 Allium sativum HOM05M001987 ORTHO05M002131 9.2e-06 54.7 79 36.7
TraesCS5A03G1107400 Triticum aestivum HOM05M001987 ORTHO05M002131 9.2e-06 54.7 82 35.4
TRIDC5AG067200 Triticum dicoccoides HOM05M001987 ORTHO05M002131 9.2e-06 54.7 82 35.4
TRITD5Av1G229810 Triticum turgidum HOM05M001987 ORTHO05M002131 9.2e-06 54.7 82 35.4


User provided reference genes

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