Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake03g226400 Oryza sativa Kitaake HOM05M001314 ORTHO05M005871 4.4e-44 180.3 100 100.0
Os03g0435900 Oryza sativa ssp. japonica HOM05M001314 ORTHO05M005871 4.4e-44 180.3 100 100.0
Os11g0368172 Oryza sativa ssp. japonica HOM05M001314 ORTHO05M005871 4.4e-44 180.3 100 100.0
OsR498G0306281600.01 Oryza sativa ssp. indica HOM05M001314 ORTHO05M005871 1.7e-43 178.3 100 99.0
GWHGAZTO024803 Oryza alta HOM05M001314 ORTHO05M005871 2.0e-36 154.8 93 96.8
GWHGAZTO077275 Oryza alta HOM05M001314 ORTHO05M009026 1.7e-35 151.8 102 90.2
OsKitaake03g396200 Oryza sativa Kitaake HOM05M001314 ORTHO05M005871 4.6e-33 143.7 93 90.3
OsR498G0307298400.01 Oryza sativa ssp. indica HOM05M001314 ORTHO05M005871 4.6e-33 143.7 93 90.3
Os03g0824000 Oryza sativa ssp. japonica HOM05M001314 ORTHO05M005871 4.6e-33 143.7 93 90.3
Dexi9B01G0002670 Digitaria exilis HOM05M001314 ORTHO05M005871 9.6e-31 136.0 94 84.0
EJB05_51525 Eragrostis curvula HOM05M001314 ORTHO05M005871 9.6e-31 136.0 101 80.2
EJB05_03781 Eragrostis curvula HOM05M001314 ORTHO05M005871 1.3e-30 135.6 93 84.9
GWHGAORA050296 Cenchrus purpureus HOM05M001314 ORTHO05M005871 1.6e-30 135.2 94 84.0
GWHGAORA020337 Cenchrus purpureus HOM05M001314 ORTHO05M005871 2.1e-30 134.8 102 80.4
Ot_Chr4_g23681 Oropetium thomaeum HOM05M001314 ORTHO05M005871 8.1e-30 132.9 93 84.9
Seita.9G030100 Setaria italica HOM05M001314 ORTHO05M005871 1.8e-29 131.7 94 81.9
Sevir.9G029100 Setaria viridis HOM05M001314 ORTHO05M005871 1.8e-29 131.7 94 81.9
Sobic.001G031400 Sorghum bicolor HOM05M001314 ORTHO05M005871 5.3e-29 130.2 95 81.1
GWHGASIY041225 Secale cereale HOM05M001314 ORTHO05M005871 1.5e-28 128.6 89 86.5
Zm00001eb062930 Zea mays B73 HOM05M001314 ORTHO05M005871 2.0e-28 128.3 96 79.2
Dexi9A01G0002950 Digitaria exilis HOM05M001314 ORTHO05M005871 4.5e-28 127.1 102 78.4
Misin01G024100 Miscanthus sinensis HOM05M001314 ORTHO05M005871 1.7e-27 125.2 101 74.3
AET1Gv20597900 Aegilops tauschii HOM05M001314 ORTHO05M005871 3.8e-27 124.0 87 85.1
TraesCS1D03G0595700 Triticum aestivum HOM05M001314 ORTHO05M005871 3.8e-27 124.0 87 85.1
GWHGAORA019835 Cenchrus purpureus HOM05M001314 ORTHO05M005871 1.4e-26 122.1 91 80.2
Misin02G016400 Miscanthus sinensis HOM05M001314 ORTHO05M005871 1.9e-26 121.7 101 73.3
Pahal.9G028000 Panicum hallii HOM05M001314 ORTHO05M005871 1.9e-26 121.7 94 78.7
TraesCS1A03G0636000 Triticum aestivum HOM05M001314 ORTHO05M005871 1.9e-26 121.7 95 78.9
TraesCS5A03G1140800 Triticum aestivum HOM05M001314 ORTHO05M005871 1.9e-26 121.7 86 84.9
TRIDC5AG069260 Triticum dicoccoides HOM05M001314 ORTHO05M005871 1.9e-26 121.7 86 84.9
TRITD5Av1G235200 Triticum turgidum HOM05M001314 ORTHO05M005871 1.9e-26 121.7 86 84.9
GWHGASIY002993 Secale cereale HOM05M001314 ORTHO05M005871 3.2e-26 120.9 85 81.2
TraesCS5B03G1212900 Triticum aestivum HOM05M001314 ORTHO05M005871 3.2e-26 120.9 85 81.2
TRIDC5BG074730 Triticum dicoccoides HOM05M001314 ORTHO05M005871 3.2e-26 120.9 85 81.2
TRITD5Bv1G234450 Triticum turgidum HOM05M001314 ORTHO05M005871 3.2e-26 120.9 85 81.2
GWHGASIY003289 Secale cereale HOM05M001314 ORTHO05M005871 4.2e-26 120.6 95 75.8
Bradi1g03461 Brachypodium distachyon HOM05M001314 ORTHO05M005871 1.2e-25 119.0 96 77.1
OsR498G0306281400.01 Oryza sativa ssp. indica HOM05M001314 ORTHO05M005871 4.6e-25 117.1 98 75.5
Zm00007a00046786 Zea mays B104 HOM05M001314 ORTHO05M005871 4.6e-25 117.1 87 80.5
AET5Gv21119700 Aegilops tauschii HOM05M001314 ORTHO05M005871 7.9e-25 116.3 85 80.0
TraesCS5D03G1095100 Triticum aestivum HOM05M001314 ORTHO05M005871 1.1e-23 112.5 85 78.8
Horvu_MOREX_5H01G682800 Hordeum vulgare HOM05M001314 ORTHO05M005871 1.5e-23 112.1 92 72.8
GWHGAORA044820 Cenchrus purpureus HOM05M001314 ORTHO05M005871 7.4e-23 109.8 63 95.2
OsKitaake03g226300 Oryza sativa Kitaake HOM05M001314 ORTHO05M005871 2.8e-22 107.8 97 73.2
Sspon.01G0062910-1D Saccharum spontaneum HOM05M001314 ORTHO05M009026 2.8e-22 107.8 94 70.2
GWHGAORA019849 Cenchrus purpureus HOM05M001314 ORTHO05M005871 4.8e-22 107.1 94 70.2
PH02Gene06052 Phyllostachys edulis HOM05M001314 ORTHO05M005871 6.9e-21 103.2 74 79.7
Zm00007a00045984 Zea mays B104 HOM05M000284 ORTHO05M001062 3.8e-19 97.4 96 65.6
Ma09_g23310 Musa acuminata HOM05M001314 ORTHO05M005871 1.6e-17 92.0 76 71.1
Aco016382 Ananas comosus HOM05M001314 ORTHO05M005871 1.8e-16 88.6 54 87.0
CALSI_Maker00001074 Calamus simplicifolius HOM05M001314 ORTHO05M005871 3.9e-16 87.4 72 70.8
DDU170G0019 Dioscorea dumetorum HOM05M001314 ORTHO05M005871 4.3e-15 84.0 70 70.0
DDU430G0039 Dioscorea dumetorum HOM05M001314 ORTHO05M005871 4.3e-15 84.0 70 70.0
Zosma01g39990 Zostera marina HOM05M001314 ORTHO05M005871 7.4e-15 83.2 71 62.0
Spipo28G0013800 Spirodela polyrhiza HOM05M001314 ORTHO05M005871 1.3e-14 82.4 83 61.4
Glyma.01G100100 Glycine max HOM05M001314 ORTHO05M005871 8.2e-14 79.7 68 63.2
MBI17_g08328_MAGBIO Magnolia biondii HOM05M001314 ORTHO05M005871 1.4e-13 79.0 50 78.0
Glyma.03G068900 Glycine max HOM05M001314 ORTHO05M005871 1.8e-13 78.6 65 64.6
OB03G46340 Oryza brachyantha HOM05M001314 ORTHO05M005871 1.8e-13 78.6 41 100.0
AT4G09550 Arabidopsis thaliana HOM05M001314 ORTHO05M005871 6.9e-13 76.6 68 61.8
HPP92_018529 Vanilla planifolia HOM05M001314 ORTHO05M005871 1.5e-12 75.5 78 55.1
CDE05G2943 Ceratophyllum demersum HOM05M001314 ORTHO05M005871 2.0e-12 75.1 66 60.6
Potri.006G035900 Populus trichocarpa HOM05M001314 ORTHO05M005871 4.5e-12 73.9 53 69.8
Asa6G00197 Allium sativum HOM05M001314 ORTHO05M005871 7.6e-12 73.2 63 63.5
AT1G73790 Arabidopsis thaliana HOM05M001314 ORTHO05M005871 1.0e-11 72.8 61 65.6
Potri.016G034200 Populus trichocarpa HOM05M001314 ORTHO05M005871 1.3e-11 72.4 67 61.2
TraesCS5A03G0938500 Triticum aestivum HOM05M001314 ORTHO05M005871 2.9e-11 71.2 88 61.4
Asa5G00592 Allium sativum HOM05M001314 ORTHO05M005871 5.0e-11 70.5 49 71.4
PRCOL_00005147 Prasinoderma coloniale HOM05M001314 ORTHO05M005871 8.5e-11 69.7 54 59.3
Pp3c13_4560 Physcomitrium patens HOM05M001314 ORTHO05M005871 1.1e-10 69.3 62 56.5
Asa3G02386 Allium sativum HOM05M001314 ORTHO05M005871 7.2e-10 66.6 50 68.0
GWHGAZTO027392 Oryza alta HOM05M000284 ORTHO05M001062 9.4e-10 66.2 33 100.0
Asa0G02735 Allium sativum HOM05M001314 ORTHO05M005871 4.6e-09 63.9 78 46.2
Asa2G06075 Allium sativum HOM05M001314 ORTHO05M005871 6.1e-09 63.5 60 58.3
MCO02G029 Micromonas commoda HOM05M001314 ORTHO05M005871 7.9e-09 63.2 61 50.8
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05M001314 ORTHO05M005871 1.0e-08 62.8 58 53.4
Os03g0435800 Oryza sativa ssp. japonica HOM05M001314 ORTHO05M005871 1.0e-08 62.8 47 76.6
Os11g0362633 Oryza sativa ssp. japonica HOM05M001314 ORTHO05M005871 1.0e-08 62.8 47 76.6
CBR_g23420 Chara braunii HOM05M001314 ORTHO05M005871 3.9e-08 60.8 71 45.1
V3.Lp_chr4_0G5290 Lolium perenne HOM05M001314 ORTHO05M005871 5.1e-08 60.5 87 54.0
SMO172G0211 Selaginella moellendorffii HOM05M001314 ORTHO05M005871 5.1e-08 60.5 49 57.1
Pp3c12_8260 Physcomitrium patens HOM05M001314 ORTHO05M005871 8.8e-08 59.7 62 51.6
Mapoly0109s0047 Marchantia polymorpha HOM05M001314 ORTHO05M005871 4.3e-07 57.4 65 46.2
Solyc03g097400.1 Solanum lycopersicum HOM05M001314 ORTHO05M005871 4.3e-07 57.4 52 57.7


User provided reference genes

Program Settings