Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0303050 Oryza sativa ssp. japonica HOM05M003603 ORTHO05M005000 2.7e-97 357.8 171 100.0
PH02Gene36307 Phyllostachys edulis HOM05M003603 ORTHO05M005000 1.4e-58 229.2 127 88.2
Zm00001eb411740 Zea mays B73 HOM05M003603 ORTHO05M005000 4.1e-58 227.6 127 87.4
Zm00007a00050678 Zea mays B104 HOM05M003603 ORTHO05M005000 4.1e-58 227.6 127 87.4
MisinT473800 Miscanthus sinensis HOM05M003603 ORTHO05M005000 5.4e-58 227.3 127 86.6
Sspon.07G0037760-1D Saccharum spontaneum HOM05M003603 ORTHO05M005000 5.4e-58 227.3 127 86.6
Sspon.07G0037760-1P Saccharum spontaneum HOM05M003603 ORTHO05M005000 5.4e-58 227.3 127 86.6
Sobic.008G083400 Sorghum bicolor HOM05M003603 ORTHO05M005000 5.4e-58 227.3 127 86.6
V3.Lp_chr1_0G13156 Lolium perenne HOM05M003603 ORTHO05M005000 9.2e-58 226.5 127 86.6
GWHGAZTO014151 Oryza alta HOM05M003603 ORTHO05M005000 2.1e-57 225.3 127 85.8
GWHGAZTO066056 Oryza alta HOM05M003603 ORTHO05M005000 2.1e-57 225.3 127 85.8
OsKitaake12g078600 Oryza sativa Kitaake HOM05M003603 ORTHO05M005000 2.1e-57 225.3 127 85.8
OsR498G1221171700.01 Oryza sativa ssp. indica HOM05M003603 ORTHO05M005000 2.1e-57 225.3 127 85.8
Os12g0235800 Oryza sativa ssp. japonica HOM05M003603 ORTHO05M005000 2.1e-57 225.3 127 85.8
Sspon.07G0037760-2P Saccharum spontaneum HOM05M003603 ORTHO05M005000 2.7e-57 224.9 127 85.8
Pahal.3G064100 Panicum hallii HOM05M003603 ORTHO05M005000 3.5e-57 224.6 127 85.0
GWHGAORA039926 Cenchrus purpureus HOM05M003603 ORTHO05M005000 1.0e-56 223.0 127 84.3
Seita.3G090300 Setaria italica HOM05M003603 ORTHO05M005000 1.3e-56 222.6 127 84.3
Sevir.3G092300 Setaria viridis HOM05M003603 ORTHO05M005000 1.3e-56 222.6 127 84.3
GWHGAORA005054 Cenchrus purpureus HOM05M003603 ORTHO05M005000 1.7e-56 222.2 127 84.3
Horvu_MOREX_1H01G396300 Hordeum vulgare HOM05M003603 ORTHO05M005000 3.0e-56 221.5 127 84.3
OB12G16350 Oryza brachyantha HOM05M003603 ORTHO05M005000 5.1e-56 220.7 127 84.3
Bradi4g01920 Brachypodium distachyon HOM05M003603 ORTHO05M005000 6.6e-56 220.3 127 83.5
PH02Gene36399 Phyllostachys edulis HOM05M003603 ORTHO05M005000 1.1e-55 219.5 127 84.3
GWHGASIY003271 Secale cereale HOM05M003603 ORTHO05M005000 1.1e-55 219.5 127 84.3
TraesCS1A03G0637500 Triticum aestivum HOM05M003603 ORTHO05M005000 1.1e-55 219.5 127 84.3
TraesCS1B03G0725000 Triticum aestivum HOM05M003603 ORTHO05M005000 1.1e-55 219.5 127 84.3
TraesCS1D03G0596300 Triticum aestivum HOM05M003603 ORTHO05M005000 1.1e-55 219.5 127 84.3
TRITD1Av1G158260 Triticum turgidum HOM05M003603 ORTHO05M005000 1.1e-55 219.5 127 84.3
TRITD1Bv1G144290 Triticum turgidum HOM05M003603 ORTHO05M005000 1.1e-55 219.5 127 84.3
Dexi3B01G0006280 Digitaria exilis HOM05M003603 ORTHO05M005000 3.3e-55 218.0 127 84.3
Aco003488 Ananas comosus HOM05M003603 ORTHO05M005000 1.2e-54 216.1 127 83.5
EJB05_54820 Eragrostis curvula HOM05M003603 ORTHO05M005000 1.6e-54 215.7 127 82.7
Ot_Chr2_g10655 Oropetium thomaeum HOM05M003603 ORTHO05M005000 2.1e-54 215.3 127 81.9
EJB05_02937 Eragrostis curvula HOM05M003603 ORTHO05M005000 3.6e-54 214.5 127 81.9
EJB05_02952 Eragrostis curvula HOM05M003603 ORTHO05M005000 3.6e-54 214.5 127 81.9
Zjn_sc00151.1.g00180.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003603 ORTHO05M005000 3.6e-54 214.5 127 81.9
EJB05_16298 Eragrostis curvula HOM05M003603 ORTHO05M005000 4.7e-54 214.2 127 81.9
Ot_Chr6_g12193 Oropetium thomaeum HOM05M003603 ORTHO05M005000 1.1e-53 213.0 127 81.1
Ma02_g22830 Musa acuminata HOM05M003603 ORTHO05M005000 1.4e-53 212.6 127 81.9
p5.00_sc00034_p0167 Elaeis guineensis HOM05M003603 ORTHO05M005000 3.1e-53 211.5 127 80.3
CALSI_Maker00003078 Calamus simplicifolius HOM05M003603 ORTHO05M005000 4.0e-53 211.1 127 80.3
CDE09G1413 Ceratophyllum demersum HOM05M003603 ORTHO05M005000 6.9e-53 210.3 127 79.5
p5.00_sc00006_p0054 Elaeis guineensis HOM05M003603 ORTHO05M005000 1.2e-52 209.5 127 80.3
HPP92_001246 Vanilla planifolia HOM05M003603 ORTHO05M005000 1.5e-52 209.1 127 81.1
Zjn_sc00010.1.g03190.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003603 ORTHO05M005000 2.0e-52 208.8 127 78.0
HPP92_001262 Vanilla planifolia HOM05M003603 ORTHO05M005000 3.4e-52 208.0 127 80.3
DDU469G0256 Dioscorea dumetorum HOM05M003603 ORTHO05M005000 4.4e-52 207.6 127 78.7
Spipo7G0051300 Spirodela polyrhiza HOM05M003603 ORTHO05M005000 4.4e-52 207.6 127 79.5
Misin14G070100 Miscanthus sinensis HOM05M003603 ORTHO05M005000 5.8e-52 207.2 117 86.3
Zosma03g29060 Zostera marina HOM05M003603 ORTHO05M005000 9.9e-52 206.5 127 80.3
CALSI_Maker00034413 Calamus simplicifolius HOM05M003603 ORTHO05M005000 1.7e-51 205.7 125 80.0
Aco008081 Ananas comosus HOM05M003603 ORTHO05M005000 4.9e-51 204.1 127 76.4
Glyma.05G046700 Glycine max HOM05M003603 ORTHO05M005000 4.9e-51 204.1 127 78.0
MBI08_g11776_MAGBIO Magnolia biondii HOM05M003603 ORTHO05M005000 4.9e-51 204.1 127 78.0
evm.TU.AsparagusV1_01.975.V1.1 Asparagus officinalis HOM05M003603 ORTHO05M005000 8.4e-51 203.4 127 77.2
Glyma.05G236000 Glycine max HOM05M003603 ORTHO05M005000 1.1e-50 203.0 127 77.2
Potri.010G239000 Populus trichocarpa HOM05M003603 ORTHO05M005000 1.1e-50 203.0 127 78.7
SEGI_40301 Sequoiadendron giganteum HOM05M003603 ORTHO05M005000 1.1e-50 203.0 128 78.9
Pp3c1_33150 Physcomitrium patens HOM05M003603 ORTHO05M005000 1.9e-50 202.2 128 78.9
SEGI_19712 Sequoiadendron giganteum HOM05M003603 ORTHO05M005000 1.9e-50 202.2 128 78.1
Glyma.17G128600 Glycine max HOM05M003603 ORTHO05M005000 2.4e-50 201.8 127 77.2
Glyma.05G046900 Glycine max HOM05M003603 ORTHO05M005000 4.2e-50 201.1 127 76.4
AT4G24830 Arabidopsis thaliana HOM05M003603 ORTHO05M005000 7.1e-50 200.3 127 76.4
evm.TU.AsparagusV1_06.286.V1.1 Asparagus officinalis HOM05M003603 ORTHO05M005000 7.1e-50 200.3 127 76.4
Potri.008G020200 Populus trichocarpa HOM05M003603 ORTHO05M005000 7.1e-50 200.3 127 78.0
Solyc05g012270.3 Solanum lycopersicum HOM05M003603 ORTHO05M005000 9.3e-50 199.9 127 75.6
Asa4G05350 Allium sativum HOM05M003603 ORTHO05M005000 2.1e-49 198.7 127 77.2
Asa8G01441 Allium sativum HOM05M003603 ORTHO05M005000 2.7e-49 198.4 127 75.6
Mapoly0038s0028 Marchantia polymorpha HOM05M003603 ORTHO05M005000 2.7e-49 198.4 128 77.3
ATR1149G068 Amborella trichopoda HOM05M003603 ORTHO05M005000 3.0e-48 194.9 127 75.6
SMO356G0518 Selaginella moellendorffii HOM05M003603 ORTHO05M005000 1.9e-47 192.2 127 74.0
Dexi3A01G0006330 Digitaria exilis HOM05M003603 ORTHO05M005000 2.5e-47 191.8 119 82.4
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05M003603 ORTHO05M005000 3.3e-47 191.4 151 64.9
Asa8G01440 Allium sativum HOM05M003603 ORTHO05M005000 8.1e-46 186.8 121 75.2
GWHGAZTO011430 Oryza alta HOM05M003603 ORTHO05M005000 2.6e-44 181.8 111 83.8
CBR_g61477 Chara braunii HOM05M003603 ORTHO05M005000 1.1e-42 176.4 128 68.0
Glyma.08G043400 Glycine max HOM05M003603 ORTHO05M005000 4.5e-36 154.5 95 78.9
Misin16G154100 Miscanthus sinensis HOM05M003603 ORTHO05M005000 5.8e-36 154.1 127 63.8
Pp3c12_4480 Physcomitrium patens HOM05M003603 ORTHO05M005000 2.1e-33 145.6 128 60.9
GWHGAORA039924 Cenchrus purpureus HOM05M003603 ORTHO05M005000 5.1e-32 141.0 80 81.2
Cre09.g416050 Chlamydomonas reinhardtii HOM05M003603 ORTHO05M005000 1.1e-31 139.8 128 53.9
SMO356G0112 Selaginella moellendorffii HOM05M003603 ORTHO05M005000 1.0e-27 126.7 89 70.8
Zosma07g00830 Zostera marina HOM05M003603 ORTHO05M005000 1.3e-27 126.3 127 49.6
PRCOL_00001450 Prasinoderma coloniale HOM05M003603 ORTHO05M005000 4.9e-27 124.4 127 49.6
OsR498G1119884700.01 Oryza sativa ssp. indica HOM05M003603 ORTHO05M197931 2.2e-22 109.0 109 57.8
Asa2G03976 Allium sativum HOM05M003603 ORTHO05M043210 7.2e-18 94.0 144 45.1
OsR498G1119884900.01 Oryza sativa ssp. indica HOM05M003603 ORTHO05M005000 1.2e-17 93.2 46 100.0
Asa8G01675 Allium sativum HOM05M003603 ORTHO05M043352 1.7e-14 82.8 106 45.3
Asa1G00158 Allium sativum HOM05M003603 ORTHO05M040642 6.3e-14 80.9 111 45.0
Asa8G03565 Allium sativum HOM05M003603 ORTHO05M046844 6.9e-13 77.4 53 69.8
GWHGAORA039925 Cenchrus purpureus HOM05M003603 ORTHO05M005000 1.2e-12 76.6 44 84.1
Asa6G03566 Allium sativum HOM05M003603 ORTHO05M043134 2.0e-07 59.3 54 51.9
Asa1G00146 Allium sativum HOM05M003603 ORTHO05M005000 5.7e-07 57.8 43 65.1


User provided reference genes

Program Settings