Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0295000 Oryza sativa ssp. japonica HOM05M004832 ORTHO05M005815 4.0e-47 190.3 92 100.0
OsKitaake11g107200 Oryza sativa Kitaake HOM05M004832 ORTHO05M005815 1.8e-39 164.9 79 100.0
OsR498G1119850500.01 Oryza sativa ssp. indica HOM05M004832 ORTHO05M005815 1.5e-38 161.8 79 98.7
GWHGAZTO011358 Oryza alta HOM05M004832 ORTHO05M005815 2.4e-36 154.5 79 94.9
GWHGAZTO063469 Oryza alta HOM05M004832 ORTHO05M005815 2.4e-36 154.5 79 94.9
OB0046G10060 Oryza brachyantha HOM05M004832 ORTHO05M005815 1.2e-35 152.1 79 92.4
PH02Gene27331 Phyllostachys edulis HOM05M004832 ORTHO05M005815 8.0e-32 139.4 77 88.3
Pahal.8G090700 Panicum hallii HOM05M004832 ORTHO05M005815 4.4e-30 133.7 76 85.5
Zjn_sc00052.1.g00020.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004832 ORTHO05M005815 9.8e-30 132.5 80 82.5
GWHGAORA042285 Cenchrus purpureus HOM05M004832 ORTHO05M005815 2.4e-28 127.9 79 84.8
EJB05_28283 Eragrostis curvula HOM05M004832 ORTHO05M005815 2.4e-28 127.9 77 84.4
EJB05_57769 Eragrostis curvula HOM05M004832 ORTHO05M005815 2.4e-28 127.9 77 84.4
Dexi8A01G0009520 Digitaria exilis HOM05M004832 ORTHO05M005815 7.0e-28 126.3 85 78.8
Dexi8B01G0008470 Digitaria exilis HOM05M004832 ORTHO05M005815 7.0e-28 126.3 85 78.8
Misin10G098900 Miscanthus sinensis HOM05M004832 ORTHO05M005815 3.8e-26 120.6 72 81.9
V3.Lp_chr4_0G10230 Lolium perenne HOM05M004832 ORTHO05M005815 3.6e-24 114.0 69 79.7
AET4Gv20152600 Aegilops tauschii HOM05M004832 ORTHO05M005815 4.7e-24 113.6 64 82.8
TraesCS4D03G0137900 Triticum aestivum HOM05M004832 ORTHO05M005815 4.7e-24 113.6 64 82.8
TraesCS4A03G0634900 Triticum aestivum HOM05M004832 ORTHO05M005815 6.1e-24 113.2 62 85.5
TRIDC4AG038040 Triticum dicoccoides HOM05M004832 ORTHO05M005815 6.1e-24 113.2 62 85.5
TraesCS4B03G0165300 Triticum aestivum HOM05M004832 ORTHO05M005815 1.4e-23 112.1 64 81.2
TRIDC4BG011390 Triticum dicoccoides HOM05M004832 ORTHO05M005815 1.4e-23 112.1 64 81.2
TRITD4Bv1G024870 Triticum turgidum HOM05M004832 ORTHO05M005815 1.4e-23 112.1 64 81.2
GWHGASIY018670 Secale cereale HOM05M004832 ORTHO05M005815 6.8e-23 109.8 79 69.6
Horvu_MOREX_4H01G078500 Hordeum vulgare HOM05M004832 ORTHO05M005815 3.4e-22 107.5 64 79.7
Aco003477 Ananas comosus HOM05M004832 ORTHO05M005815 4.1e-20 100.5 78 65.4
evm.TU.AsparagusV1_02.1028.V1.1 Asparagus officinalis HOM05M004832 ORTHO05M005815 1.0e-18 95.9 68 69.1
DDU739G0626 Dioscorea dumetorum HOM05M004832 ORTHO05M005815 3.9e-18 94.0 69 68.1
p5.00_sc00034_p0158 Elaeis guineensis HOM05M004832 ORTHO05M005815 2.8e-16 87.8 69 60.9
HPP92_007612 Vanilla planifolia HOM05M004832 ORTHO05M005815 3.6e-16 87.4 70 61.4
CALSI_Maker00022606 Calamus simplicifolius HOM05M004832 ORTHO05M005815 4.7e-16 87.0 69 62.3
DDU491G0007 Dioscorea dumetorum HOM05M004832 ORTHO05M005815 6.2e-16 86.7 70 60.0
DDU556G0072 Dioscorea dumetorum HOM05M004832 ORTHO05M005815 6.2e-16 86.7 70 60.0
PH02Gene19626 Phyllostachys edulis HOM05M004832 ORTHO05M005815 1.8e-15 85.1 78 56.4
Asa5G04616 Allium sativum HOM05M004832 ORTHO05M005815 5.2e-15 83.6 76 53.9
OsKitaake12g077300 Oryza sativa Kitaake HOM05M004832 ORTHO05M005815 2.0e-14 81.6 78 57.7
OsR498G1221165900.01 Oryza sativa ssp. indica HOM05M004832 ORTHO05M005815 2.0e-14 81.6 78 57.7
Os12g0233300 Oryza sativa ssp. japonica HOM05M004832 ORTHO05M005815 2.0e-14 81.6 78 57.7
Potri.002G248800 Populus trichocarpa HOM05M004832 ORTHO05M005815 2.0e-14 81.6 69 63.8
Ma06_g13920 Musa acuminata HOM05M004832 ORTHO05M005815 2.6e-14 81.3 75 56.0
Misin09G112400 Miscanthus sinensis HOM05M004832 ORTHO05M005815 5.8e-14 80.1 38 94.7
GWHGAZTO014159 Oryza alta HOM05M004832 ORTHO05M005815 5.8e-14 80.1 78 56.4
GWHGAZTO066047 Oryza alta HOM05M004832 ORTHO05M005815 5.8e-14 80.1 78 55.1
OB12G16250 Oryza brachyantha HOM05M004832 ORTHO05M005815 7.5e-14 79.7 78 57.7
Bradi4g39695 Brachypodium distachyon HOM05M004832 ORTHO05M005815 3.7e-13 77.4 77 55.8
Zjn_sc00151.1.g00250.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004832 ORTHO05M005815 1.4e-12 75.5 78 50.0
GWHGAORA005060 Cenchrus purpureus HOM05M004832 ORTHO05M005815 1.9e-12 75.1 65 55.4
GWHGAORA063965 Cenchrus purpureus HOM05M004832 ORTHO05M005815 1.9e-12 75.1 65 55.4
Dexi3A01G0006270 Digitaria exilis HOM05M004832 ORTHO05M005815 1.9e-12 75.1 74 52.7
Pahal.3G063500 Panicum hallii HOM05M004832 ORTHO05M005815 3.2e-12 74.3 77 54.5
Seita.3G091100 Setaria italica HOM05M004832 ORTHO05M005815 3.2e-12 74.3 65 56.9
Sevir.3G092900 Setaria viridis HOM05M004832 ORTHO05M005815 3.2e-12 74.3 65 56.9
Sspon.07G0037780-1D Saccharum spontaneum HOM05M004832 ORTHO05M005815 5.4e-12 73.6 78 52.6
Sspon.07G0037780-1P Saccharum spontaneum HOM05M004832 ORTHO05M005815 5.4e-12 73.6 78 52.6
Misin14G069200 Miscanthus sinensis HOM05M004832 ORTHO05M005815 7.0e-12 73.2 78 51.3
Ot_Chr2_gn32632 Oropetium thomaeum HOM05M004832 ORTHO05M005815 7.0e-12 73.2 74 50.0
evm.TU.AsparagusV1_09.587.V1.1 Asparagus officinalis HOM05M004832 ORTHO05M005815 9.2e-12 72.8 40 77.5
SEGI_25619 Sequoiadendron giganteum HOM05M004832 ORTHO05M005815 9.2e-12 72.8 64 57.8
Solyc06g007590.3 Solanum lycopersicum HOM05M004832 ORTHO05M005815 1.2e-11 72.4 59 55.9
GWHGAORA039932 Cenchrus purpureus HOM05M004832 ORTHO05M005815 1.6e-11 72.0 65 55.4
EJB05_02931 Eragrostis curvula HOM05M004832 ORTHO05M005815 1.6e-11 72.0 78 50.0
ATR1149G002 Amborella trichopoda HOM05M004832 ORTHO05M005815 2.0e-11 71.6 60 56.7
EJB05_02961 Eragrostis curvula HOM05M004832 ORTHO05M005815 2.0e-11 71.6 93 46.2
Glyma.08G345600 Glycine max HOM05M004832 ORTHO05M005815 2.0e-11 71.6 64 56.2
Dexi3B01G0006200 Digitaria exilis HOM05M004832 ORTHO05M005815 2.7e-11 71.2 77 51.9
SMO201G0137 Selaginella moellendorffii HOM05M004832 ORTHO05M005815 3.5e-11 70.9 44 72.7
Sobic.008G082900 Sorghum bicolor HOM05M004832 ORTHO05M005815 4.6e-11 70.5 65 55.4
Pp3c1_40870 Physcomitrium patens HOM05M004832 ORTHO05M005815 6.0e-11 70.1 70 52.9
Ma10_g16520 Musa acuminata HOM05M004832 ORTHO05M005815 1.7e-10 68.6 49 63.3
Zosma02g23430 Zostera marina HOM05M004832 ORTHO05M005815 1.7e-10 68.6 60 55.0
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05M004832 ORTHO05M005815 3.0e-10 67.8 66 53.0
Misin15G085300 Miscanthus sinensis HOM05M004832 ORTHO05M005815 5.0e-10 67.0 77 50.6
Spipo4G0068500 Spirodela polyrhiza HOM05M004832 ORTHO05M005815 5.6e-09 63.5 75 49.3
CBR_g28074 Chara braunii HOM05M004832 ORTHO05M005815 9.5e-09 62.8 43 60.5
CBR_g41484 Chara braunii HOM05M004832 ORTHO05M005815 2.1e-08 61.6 43 62.8
CDE08G0780 Ceratophyllum demersum HOM05M004832 ORTHO05M005815 1.2e-06 55.8 44 61.4


User provided reference genes

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