Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g103200 Oryza sativa Kitaake HOM05M002291 ORTHO05M002544 0.0e+00 1704.1 876 100.0
Os11g0276000 Oryza sativa ssp. japonica HOM05M002291 ORTHO05M002544 0.0e+00 1704.1 876 100.0
OsR498G1119811900.01 Oryza sativa ssp. indica HOM05M002291 ORTHO05M002544 0.0e+00 1696.0 876 99.4
OB11G17520 Oryza brachyantha HOM05M002291 ORTHO05M002544 0.0e+00 1599.7 884 92.6
PH02Gene24484 Phyllostachys edulis HOM05M002291 ORTHO05M002544 0.0e+00 1550.8 884 89.5
Bradi4g20338 Brachypodium distachyon HOM05M002291 ORTHO05M002544 0.0e+00 1506.1 881 87.3
Seita.8G104600 Setaria italica HOM05M002291 ORTHO05M002544 0.0e+00 1502.3 882 87.2
Dexi8B01G0008200 Digitaria exilis HOM05M002291 ORTHO05M002544 0.0e+00 1478.8 905 84.9
GWHGAORA042310 Cenchrus purpureus HOM05M002291 ORTHO05M002544 0.0e+00 1478.0 882 85.9
V3.Lp_chr4_0G10206 Lolium perenne HOM05M002291 ORTHO05M002544 0.0e+00 1476.5 884 85.7
GWHGASIY018893 Secale cereale HOM05M002291 ORTHO05M002544 0.0e+00 1456.4 882 84.5
Horvu_MOREX_4H01G091600 Hordeum vulgare HOM05M002291 ORTHO05M002544 0.0e+00 1452.6 882 84.6
Sobic.005G106700 Sorghum bicolor HOM05M002291 ORTHO05M002544 0.0e+00 1449.5 884 84.8
EJB05_28327 Eragrostis curvula HOM05M002291 ORTHO05M002544 0.0e+00 1447.2 869 85.3
TraesCS4A03G0617400 Triticum aestivum HOM05M002291 ORTHO05M002544 0.0e+00 1446.8 883 83.9
TRIDC4AG036860 Triticum dicoccoides HOM05M002291 ORTHO05M002544 0.0e+00 1446.8 883 83.9
TraesCS4B03G0187400 Triticum aestivum HOM05M002291 ORTHO05M002544 0.0e+00 1446.4 883 84.1
AET4Gv20170300 Aegilops tauschii HOM05M002291 ORTHO05M002544 0.0e+00 1438.3 883 83.6
TraesCS4D03G0154100 Triticum aestivum HOM05M002291 ORTHO05M002544 0.0e+00 1438.3 883 83.6
GWHGAORA022432 Cenchrus purpureus HOM05M002291 ORTHO05M002544 0.0e+00 1433.3 882 84.2
TRITD4Bv1G028210 Triticum turgidum HOM05M002291 ORTHO05M002544 0.0e+00 1432.9 875 84.0
TRITD4Av1G175570 Triticum turgidum HOM05M002291 ORTHO05M002544 0.0e+00 1412.1 883 82.2
Sspon.05G0015860-2C Saccharum spontaneum HOM05M002291 ORTHO05M002544 0.0e+00 1411.7 882 84.0
TRIDC4BG012790 Triticum dicoccoides HOM05M002291 ORTHO05M002544 0.0e+00 1388.6 834 84.5
Aco017685 Ananas comosus HOM05M002291 ORTHO05M002544 0.0e+00 1319.3 885 74.8
p5.00_sc00366_p0009 Elaeis guineensis HOM05M002291 ORTHO05M002544 0.0e+00 1293.1 890 73.1
Ma08_g04720 Musa acuminata HOM05M002291 ORTHO05M002544 0.0e+00 1283.9 882 73.4
Sevir.8G107200 Setaria viridis HOM05M002291 ORTHO05M002544 0.0e+00 1282.3 753 87.1
GWHGAZTO011287 Oryza alta HOM05M002291 ORTHO05M002544 0.0e+00 1240.3 663 95.9
CALSI_Maker00036549 Calamus simplicifolius HOM05M002291 ORTHO05M002544 0.0e+00 1218.8 884 70.4
Potri.014G039100 Populus trichocarpa HOM05M002291 ORTHO05M002544 0.0e+00 1208.7 895 67.8
ATR0733G144 Amborella trichopoda HOM05M002291 ORTHO05M002544 0.0e+00 1204.5 892 67.7
AT1G47550 Arabidopsis thaliana HOM05M002291 ORTHO05M002544 0.0e+00 1198.0 894 68.0
Solyc12g088990.2 Solanum lycopersicum HOM05M002291 ORTHO05M002544 0.0e+00 1195.6 892 67.2
Potri.002G131400 Populus trichocarpa HOM05M002291 ORTHO05M002544 0.0e+00 1191.0 891 66.7
Zm00001eb168790 Zea mays B73 HOM05M002291 ORTHO05M002544 0.0e+00 1190.6 720 85.1
p5.00_sc00484_p0001 Elaeis guineensis HOM05M002291 ORTHO05M002544 0.0e+00 1186.8 910 66.5
p5.00_sc00030_p0035 Elaeis guineensis HOM05M002291 ORTHO05M002544 0.0e+00 1179.5 888 67.8
HPP92_017781 Vanilla planifolia HOM05M002291 ORTHO05M002544 0.0e+00 1172.9 893 66.9
AT1G47560 Arabidopsis thaliana HOM05M002291 ORTHO05M002544 0.0e+00 1167.5 893 66.4
Asa7G01860 Allium sativum HOM05M002291 ORTHO05M002544 0.0e+00 1164.4 884 66.2
Spipo2G0116000 Spirodela polyrhiza HOM05M002291 ORTHO05M002544 0.0e+00 1164.4 893 66.3
Glyma.17G246600 Glycine max HOM05M002291 ORTHO05M002544 0.0e+00 1161.7 904 66.2
Glyma.09G114500 Glycine max HOM05M002291 ORTHO05M002544 0.0e+00 1160.6 904 65.9
PH02Gene24392 Phyllostachys edulis HOM05M002291 ORTHO05M002544 0.0e+00 1159.4 895 66.0
Pahal.9G162500 Panicum hallii HOM05M002291 ORTHO05M002544 0.0e+00 1157.9 895 66.0
Misin02G141000 Miscanthus sinensis HOM05M002291 ORTHO05M002544 0.0e+00 1157.1 895 65.8
Zm00001eb051220 Zea mays B73 HOM05M002291 ORTHO05M002544 0.0e+00 1156.7 895 65.7
Sobic.001G163400 Sorghum bicolor HOM05M002291 ORTHO05M002544 0.0e+00 1156.4 895 65.7
Misin01G136600 Miscanthus sinensis HOM05M002291 ORTHO05M002544 0.0e+00 1156.0 895 65.7
HPP92_006943 Vanilla planifolia HOM05M002291 ORTHO05M002544 0.0e+00 1156.0 885 68.1
Sspon.01G0026400-2D Saccharum spontaneum HOM05M002291 ORTHO05M002544 0.0e+00 1155.2 895 65.7
GWHGAORA018890 Cenchrus purpureus HOM05M002291 ORTHO05M002544 0.0e+00 1154.8 895 65.7
Seita.9G165300 Setaria italica HOM05M002291 ORTHO05M002544 0.0e+00 1152.9 895 65.6
Sevir.9G163200 Setaria viridis HOM05M002291 ORTHO05M002544 0.0e+00 1152.9 895 65.6
Bradi1g14450 Brachypodium distachyon HOM05M002291 ORTHO05M002544 0.0e+00 1148.7 897 65.4
EJB05_05599 Eragrostis curvula HOM05M002291 ORTHO05M002544 0.0e+00 1148.7 894 65.7
GWHGASIY018646 Secale cereale HOM05M002291 ORTHO05M002544 0.0e+00 1144.0 898 64.8
Horvu_MOREX_4H01G076400 Hordeum vulgare HOM05M002291 ORTHO05M002544 0.0e+00 1143.3 898 64.7
V3.Lp_chr4_0G9542 Lolium perenne HOM05M002291 ORTHO05M002544 0.0e+00 1142.9 898 64.8
Glyma.04G034700 Glycine max HOM05M002291 ORTHO05M002544 0.0e+00 1142.5 886 65.9
Sspon.01G0023660-2B Saccharum spontaneum HOM05M002291 ORTHO05M002544 0.0e+00 1141.7 918 63.9
GWHGAORA051724 Cenchrus purpureus HOM05M002291 ORTHO05M002544 0.0e+00 1140.9 908 64.4
OB03G34480 Oryza brachyantha HOM05M002291 ORTHO05M002544 0.0e+00 1138.3 894 64.8
AET4Gv20148000 Aegilops tauschii HOM05M002291 ORTHO05M002544 0.0e+00 1137.9 899 64.6
TraesCS4D03G0133300 Triticum aestivum HOM05M002291 ORTHO05M002544 0.0e+00 1137.9 899 64.6
Ma02_g15140 Musa acuminata HOM05M002291 ORTHO05M002544 0.0e+00 1137.5 890 64.2
Zjn_sc00065.1.g02150.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002291 ORTHO05M002544 0.0e+00 1137.5 889 65.4
GWHGAZTO025575 Oryza alta HOM05M002291 ORTHO05M002544 0.0e+00 1137.1 894 64.9
OsKitaake03g261900 Oryza sativa Kitaake HOM05M002291 ORTHO05M002544 0.0e+00 1134.8 894 64.7
OsR498G0306593000.01 Oryza sativa ssp. indica HOM05M002291 ORTHO05M002544 0.0e+00 1134.8 894 64.7
Os03g0625700 Oryza sativa ssp. japonica HOM05M002291 ORTHO05M002544 0.0e+00 1134.8 894 64.7
TRITD4Av1G180700 Triticum turgidum HOM05M002291 ORTHO05M002544 0.0e+00 1132.9 899 64.4
Ot_Chr4_g08444 Oropetium thomaeum HOM05M002291 ORTHO05M002544 0.0e+00 1132.5 898 64.7
MBI16_g36197_MAGBIO Magnolia biondii HOM05M002291 ORTHO05M002544 0.0e+00 1132.1 890 65.3
Sspon.01G0023660-1A Saccharum spontaneum HOM05M002291 ORTHO05M002544 0.0e+00 1130.2 943 62.2
Pahal.8G100600 Panicum hallii HOM05M002291 ORTHO05M002544 0.0e+00 1129.8 658 88.1
TRIDC4BG011070 Triticum dicoccoides HOM05M002291 ORTHO05M002544 0.0e+00 1113.6 864 65.5
TRIDC4AG038340 Triticum dicoccoides HOM05M002291 ORTHO05M002544 0.0e+00 1102.4 862 65.0
Dexi9A01G0016040 Digitaria exilis HOM05M002291 ORTHO05M002544 0.0e+00 1100.5 895 63.2
Dexi9B01G0012340 Digitaria exilis HOM05M002291 ORTHO05M002544 0.0e+00 1097.4 893 63.4
DDU097G0002 Dioscorea dumetorum HOM05M002291 ORTHO05M002544 0.0e+00 1096.6 903 63.5
Aco004951 Ananas comosus HOM05M002291 ORTHO05M002544 0.0e+00 1092.0 892 63.7
DDU761G0012 Dioscorea dumetorum HOM05M002291 ORTHO05M002544 0.0e+00 1091.6 913 62.7
DDU693G0279 Dioscorea dumetorum HOM05M002291 ORTHO05M002544 0.0e+00 1088.9 922 62.1
CDE07G1354 Ceratophyllum demersum HOM05M002291 ORTHO05M002544 0.0e+00 1085.5 901 61.7
evm.TU.AsparagusV1_03.823.V1.1 Asparagus officinalis HOM05M002291 ORTHO05M002544 0.0e+00 1083.6 894 62.6
TraesCS4B03G0160200 Triticum aestivum HOM05M002291 ORTHO05M002544 5.6e-308 1060.1 899 61.7
TRITD4Bv1G024190 Triticum turgidum HOM05M002291 ORTHO05M002544 5.6e-308 1060.1 899 61.7
evm.TU.AsparagusV1_07.764.V1.1 Asparagus officinalis HOM05M002291 ORTHO05M002544 1.2e-305 1052.4 877 62.6
Misin09G109400 Miscanthus sinensis HOM05M002291 ORTHO05M002544 1.7e-304 1048.5 655 83.2
Zosma06g06920 Zostera marina HOM05M002291 ORTHO05M002544 1.5e-300 1035.4 895 59.9
Zosma06g01640 Zostera marina HOM05M002291 ORTHO05M002544 6.8e-298 1026.5 898 59.9
Asa8G02545 Allium sativum HOM05M002291 ORTHO05M002544 3.7e-296 1020.8 878 61.5
CALSI_Maker00025613 Calamus simplicifolius HOM05M002291 ORTHO05M002544 5.8e-289 996.9 807 64.6
TraesCS4A03G0641300 Triticum aestivum HOM05M002291 ORTHO05M002544 8.4e-280 966.5 768 64.2
Sspon.05G0015860-1A Saccharum spontaneum HOM05M002291 ORTHO05M002544 1.2e-278 962.6 594 83.7
SMO117G0063 Selaginella moellendorffii HOM05M002291 ORTHO05M002544 3.9e-277 957.6 894 54.9
Pp3c11_22450 Physcomitrium patens HOM05M002291 ORTHO05M002544 5.1e-277 957.2 856 57.5
Dexi8A01G0009290 Digitaria exilis HOM05M002291 ORTHO05M002544 1.6e-267 925.6 622 79.6
Mapoly0013s0072 Marchantia polymorpha HOM05M002291 ORTHO05M002544 8.1e-267 923.3 895 54.3
Misin10G101100 Miscanthus sinensis HOM05M002291 ORTHO05M002544 4.9e-264 914.1 583 82.0
AagrBONN_evm.TU.Sc2ySwM_228.1666 Anthoceros agrestis HOM05M002291 ORTHO05M002544 1.2e-257 892.9 893 53.0
AagrBONN_evm.TU.Sc2ySwM_228.1675 Anthoceros agrestis HOM05M002291 ORTHO05M002544 1.2e-257 892.9 893 53.0
HPP92_006946 Vanilla planifolia HOM05M002291 ORTHO05M002544 1.2e-249 866.3 739 63.6
Zm00007a00049641 Zea mays B104 HOM05M002291 ORTHO05M002544 8.7e-245 850.1 668 65.1
CDE04G0236 Ceratophyllum demersum HOM05M002291 ORTHO05M002544 1.4e-231 806.2 889 51.7
Sspon.01G0026400-1A Saccharum spontaneum HOM05M002291 ORTHO05M002544 1.2e-204 716.8 691 56.7
GWHGAZTO075536 Oryza alta HOM05M002291 ORTHO05M002544 1.2e-196 690.3 550 65.5
PH02Gene29787 Phyllostachys edulis HOM05M002291 ORTHO05M002544 1.2e-188 663.7 372 91.1
CBR_g48206 Chara braunii HOM05M002291 ORTHO05M002544 2.6e-188 662.5 878 43.5
Solyc07g025170.3 Solanum lycopersicum HOM05M002291 ORTHO05M002544 3.6e-182 642.1 475 68.6
EJB05_03181 Eragrostis curvula HOM05M002291 ORTHO05M002544 2.3e-181 639.4 552 59.4
Pp3c11_16180 Physcomitrium patens HOM05M002291 ORTHO05M002544 6.8e-181 637.9 882 41.4
CBR_g3845 Chara braunii HOM05M002291 ORTHO05M002544 7.8e-177 624.4 855 42.9
Zm00007a00043331 Zea mays B104 HOM05M002291 ORTHO05M002544 2.3e-173 612.8 380 83.2
Pp3c1_15530 Physcomitrium patens HOM05M002291 ORTHO05M002544 6.4e-163 578.2 894 38.7
PH02Gene29788 Phyllostachys edulis HOM05M002291 ORTHO05M002544 5.5e-146 521.9 314 85.0
GWHGAZTO063375 Oryza alta HOM05M002291 ORTHO05M002544 1.8e-141 506.9 381 74.0
Dexi8A01G0009260 Digitaria exilis HOM05M002291 ORTHO05M002544 2.8e-134 483.0 263 92.4
CALSI_Maker00018961 Calamus simplicifolius HOM05M002291 ORTHO05M002544 6.5e-131 471.9 477 54.3
SEGI_11826 Sequoiadendron giganteum HOM05M002291 ORTHO05M002544 3.7e-126 456.1 401 59.6
GWHGAZTO075535 Oryza alta HOM05M002291 ORTHO05M002544 8.2e-126 454.9 323 66.9
Dexi8A01G0009250 Digitaria exilis HOM05M002291 ORTHO05M002544 2.1e-121 440.3 294 78.2
Ot_Un51_gn40997 Oropetium thomaeum HOM05M002291 ORTHO05M002544 5.2e-112 409.1 523 47.6
DDU712G0003 Dioscorea dumetorum HOM05M002291 ORTHO05M002544 1.3e-110 404.4 294 69.7
DDU556G0756 Dioscorea dumetorum HOM05M002291 ORTHO05M002544 1.4e-109 401.0 294 69.0
GWHGAZTO011286 Oryza alta HOM05M002291 ORTHO05M002544 7.5e-87 325.5 173 93.6
Glyma.14G078400 Glycine max HOM05M002291 ORTHO05M002544 2.4e-85 320.5 224 68.8
PH02Gene29789 Phyllostachys edulis HOM05M002291 ORTHO05M002544 1.2e-81 308.1 170 88.8
GWHGAZTO063373 Oryza alta HOM05M002291 ORTHO05M002544 5.7e-79 299.3 160 93.8
Zjn_sc00082.1.g00810.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002291 ORTHO05M002544 3.0e-75 287.0 233 68.2
Glyma.09G114700 Glycine max HOM05M002291 ORTHO05M002544 2.1e-73 280.8 473 38.9
Zm00007a00037767 Zea mays B104 HOM05M002291 ORTHO05M002544 8.6e-67 258.8 225 60.9
Zm00007a00048653 Zea mays B104 HOM05M002291 ORTHO05M002544 8.6e-67 258.8 174 79.9
DDU712G0007 Dioscorea dumetorum HOM05M002291 ORTHO05M002544 2.0e-55 221.1 181 62.4
DDU556G1418 Dioscorea dumetorum HOM05M002291 ORTHO05M002544 3.4e-55 220.3 175 64.0
Zm00001eb168780 Zea mays B73 HOM05M002291 ORTHO05M002544 1.6e-49 201.4 137 79.6
Zm00007a00049432 Zea mays B104 HOM05M002291 ORTHO05M002544 2.9e-46 190.7 123 79.7
MBI13_g04790_MAGBIO Magnolia biondii HOM05M005652 ORTHO05M007272 4.9e-46 189.9 209 49.3
Glyma.14G078700 Glycine max HOM05M002291 ORTHO05M002544 2.3e-43 181.0 161 58.4
Cre09.g392000 Chlamydomonas reinhardtii HOM05M002291 ORTHO05M002544 5.6e-34 149.8 1046 20.1
CALSI_Maker00018964 Calamus simplicifolius HOM05M002291 ORTHO05M002544 4.8e-33 146.7 148 55.4
SEGI_15002 Sequoiadendron giganteum HOM05M002291 ORTHO05M002544 4.8e-33 146.7 141 53.2
CALSI_Maker00025619 Calamus simplicifolius HOM05M002291 ORTHO05M002544 4.5e-31 140.2 90 71.1
SEGI_30062 Sequoiadendron giganteum HOM05M002291 ORTHO05M002544 1.3e-30 138.7 90 72.2
Zm00007a00043332 Zea mays B104 HOM05M002291 ORTHO05M002544 1.5e-26 125.2 67 92.5
MBI19_g06118_MAGBIO Magnolia biondii HOM05M002291 ORTHO05M002544 2.2e-22 111.3 169 42.0
GWHGAORA022617 Cenchrus purpureus HOM05M002291 ORTHO05M002544 1.8e-19 101.7 78 61.5
SEGI_02474 Sequoiadendron giganteum HOM05M002291 ORTHO05M002544 1.5e-18 98.6 81 58.0
SEGI_35902 Sequoiadendron giganteum HOM05M002291 ORTHO05M002544 3.3e-18 97.4 64 67.2
Asa7G05115 Allium sativum HOM05M004932 ORTHO05M006190 5.7e-10 70.1 48 70.8
Asa6G05679 Allium sativum HOM05M002529 ORTHO05M002829 7.4e-10 69.7 67 56.7
Asa7G01128 Allium sativum HOM05M004932 ORTHO05M006190 1.3e-09 68.9 67 53.7
AET5Gv21158500 Aegilops tauschii HOM05M002291 ORTHO05M002544 2.8e-09 67.8 48 66.7
Pp3c11_16980 Physcomitrium patens HOM05M002291 ORTHO05M002544 3.7e-09 67.4 74 41.9
CDE06G1192 Ceratophyllum demersum HOM05M002291 ORTHO05M021249 1.1e-08 65.9 141 36.2
Zjn_sc00065.1.g02145.1.br Zoysia japonica ssp. nagirizaki HOM05M002291 ORTHO05M021249 2.2e-06 58.2 62 53.2


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