Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0269100 Oryza sativa ssp. japonica HOM05M003486 ORTHO05M002466 2.3e-75 284.6 137 100.0
OsKitaake11g100000 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 1.1e-64 249.2 120 100.0
OsR498G1119780600.01 Oryza sativa ssp. indica HOM05M003486 ORTHO05M002466 1.7e-62 241.9 120 97.5
Horvu_MOREX_Un01G057300 Hordeum vulgare HOM05M003486 ORTHO05M002466 1.8e-59 231.9 131 86.3
AET5Gv21238900 Aegilops tauschii HOM05M003486 ORTHO05M002466 1.5e-58 228.8 131 85.5
TraesCS2D03G0544400 Triticum aestivum HOM05M003486 ORTHO05M002466 1.5e-58 228.8 131 85.5
TraesCS3D03G0109200 Triticum aestivum HOM05M003486 ORTHO05M002466 1.5e-58 228.8 131 85.5
TRIDC4BG002940 Triticum dicoccoides HOM05M003486 ORTHO05M002466 5.7e-58 226.9 131 84.7
TraesCS1A03G1053200 Triticum aestivum HOM05M003486 ORTHO05M002466 3.7e-57 224.2 131 84.0
Spipo0G0159400 Spirodela polyrhiza HOM05M003486 ORTHO05M002466 4.8e-57 223.8 130 82.3
TraesCS6A03G0500400 Triticum aestivum HOM05M003486 ORTHO05M002466 1.2e-55 219.2 131 81.7
Horvu_MOREX_2H01G373100 Hordeum vulgare HOM05M003486 ORTHO05M002466 7.7e-55 216.5 131 80.9
TRITD3Bv1G076130 Triticum turgidum HOM05M003486 ORTHO05M002466 1.7e-54 215.3 128 82.0
TRITD1Av1G227010 Triticum turgidum HOM05M003486 ORTHO05M002466 2.9e-54 214.5 128 82.0
TRITD6Av1G100260 Triticum turgidum HOM05M003486 ORTHO05M002466 2.9e-54 214.5 128 82.0
Seita.J014900 Setaria italica HOM05M003486 ORTHO05M002466 1.4e-53 212.2 123 85.4
TraesCS6A03G0491900 Triticum aestivum HOM05M003486 ORTHO05M002466 1.4e-53 212.2 129 80.6
Horvu_MOREX_6H01G272900 Hordeum vulgare HOM05M003486 ORTHO05M002466 3.2e-53 211.1 131 78.6
OsKitaake01g354900 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 1.2e-52 209.1 114 89.5
OsKitaake07g257400 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 1.2e-52 209.1 114 89.5
OsKitaake11g187900 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 1.2e-52 209.1 114 89.5
ATCG00790 Arabidopsis thaliana HOM05M003486 ORTHO05M002466 4.7e-52 207.2 128 78.1
OsKitaake07g262400 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 1.4e-51 205.7 114 88.6
Bradi1g05774 Brachypodium distachyon HOM05M003486 ORTHO05M002466 5.7e-50 200.3 114 86.8
Bradi3g27295 Brachypodium distachyon HOM05M003486 ORTHO05M002466 5.7e-50 200.3 114 86.8
Asa2G07061 Allium sativum HOM05M003486 ORTHO05M002466 3.7e-49 197.6 128 76.6
Pahal.4G130200 Panicum hallii HOM05M003486 ORTHO05M002466 6.3e-49 196.8 114 86.0
Zm00007a00046253 Zea mays B104 HOM05M003486 ORTHO05M002466 6.3e-49 196.8 112 87.5
Sevir.9G044615 Setaria viridis HOM05M003486 ORTHO05M002466 1.4e-48 195.7 114 85.1
Ot_Un168_gn40599 Oropetium thomaeum HOM05M003486 ORTHO05M002466 2.4e-48 194.9 114 83.3
Ot_Un169_gn40640 Oropetium thomaeum HOM05M003486 ORTHO05M002466 2.4e-48 194.9 114 83.3
TRIDC4AG060220 Triticum dicoccoides HOM05M003486 ORTHO05M002466 5.3e-48 193.7 114 84.2
AET1Gv20470600 Aegilops tauschii HOM05M003486 ORTHO05M002466 1.2e-47 192.6 114 82.5
SMO086G0056 Selaginella moellendorffii HOM05M003486 ORTHO05M002466 1.5e-47 192.2 130 69.2
Asa0G01643 Allium sativum HOM05M003486 ORTHO05M002466 2.6e-47 191.4 114 81.6
Asa1G01137 Allium sativum HOM05M003486 ORTHO05M002466 2.6e-47 191.4 114 81.6
Asa2G02767 Allium sativum HOM05M003486 ORTHO05M002466 2.6e-47 191.4 114 81.6
Asa4G06591 Allium sativum HOM05M003486 ORTHO05M002466 2.6e-47 191.4 114 81.6
Asa6G04107 Allium sativum HOM05M003486 ORTHO05M002466 2.6e-47 191.4 114 81.6
Asa6G05850 Allium sativum HOM05M003486 ORTHO05M002466 2.6e-47 191.4 114 81.6
Asa7G03840 Allium sativum HOM05M003486 ORTHO05M002466 2.6e-47 191.4 114 81.6
Asa0G00124 Allium sativum HOM05M003486 ORTHO05M002466 5.9e-47 190.3 114 80.7
ATR0424G001 Amborella trichopoda HOM05M003486 ORTHO05M002466 7.7e-47 189.9 114 78.9
Solyc00g500032.1 Solanum lycopersicum HOM05M003486 ORTHO05M002466 1.0e-46 189.5 114 80.7
Solyc00g500077.1 Solanum lycopersicum HOM05M003486 ORTHO05M002466 1.0e-46 189.5 114 80.7
TRIDC1AG063670 Triticum dicoccoides HOM05M003486 ORTHO05M002466 1.7e-46 188.7 114 81.6
Asa0G05632 Allium sativum HOM05M003486 ORTHO05M002466 8.5e-46 186.4 114 81.6
TRIDC6AG029060 Triticum dicoccoides HOM05M003486 ORTHO05M002466 1.1e-45 186.0 114 80.7
Zosma70g00010 Zostera marina HOM05M003486 ORTHO05M002466 1.1e-45 186.0 114 78.9
Zosma935g00010 Zostera marina HOM05M003486 ORTHO05M002466 1.1e-45 186.0 114 78.9
V3.Lp_chr5_0G17230 Lolium perenne HOM05M003486 ORTHO05M002466 3.2e-45 184.5 106 84.0
SEGI_15837 Sequoiadendron giganteum HOM05M003486 ORTHO05M002466 2.7e-44 181.4 135 66.7
TRIDC7BG050150 Triticum dicoccoides HOM05M003486 ORTHO05M002466 2.7e-44 181.4 109 81.7
Asa3G02108 Allium sativum HOM05M003486 ORTHO05M002466 1.0e-43 179.5 114 77.2
Asa4G01756 Allium sativum HOM05M003486 ORTHO05M002466 2.3e-43 178.3 128 65.6
Asa2G00676 Allium sativum HOM05M003486 ORTHO05M002466 1.5e-42 175.6 100 83.0
Solyc00g500154.1 Solanum lycopersicum HOM05M003486 ORTHO05M002466 1.5e-42 175.6 114 76.3
CDE02G2600 Ceratophyllum demersum HOM05M000532 ORTHO05M002466 2.0e-42 175.3 99 83.8
Asa2G07513 Allium sativum HOM05M003486 ORTHO05M002466 1.4e-40 169.1 112 75.0
Asa2G07517 Allium sativum HOM05M003486 ORTHO05M002466 2.4e-40 168.3 112 75.0
Asa5G04350 Allium sativum HOM05M003486 ORTHO05M002466 2.6e-39 164.9 98 79.6
SEGI_15868 Sequoiadendron giganteum HOM05M003486 ORTHO05M002466 1.5e-37 159.1 107 72.0
AET4Gv20086600 Aegilops tauschii HOM05M003486 ORTHO05M002466 4.2e-37 157.5 115 72.2
Asa0G03241 Allium sativum HOM05M003486 ORTHO05M002466 4.2e-37 157.5 93 81.7
OsKitaake09g073300 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 2.7e-36 154.8 114 71.1
OsKitaakeM050601 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 2.7e-36 154.8 114 71.1
Aco016798 Ananas comosus HOM05M003486 ORTHO05M001487 1.2e-34 149.4 83 84.3
AT2G28815 Arabidopsis thaliana HOM05M003486 ORTHO05M002466 2.6e-34 148.3 126 61.1
Aco025940 Ananas comosus HOM05M003486 ORTHO05M001487 1.3e-33 146.0 82 82.9
GWHGASIY042326 Secale cereale HOM05M003486 ORTHO05M002466 1.3e-33 146.0 79 86.1
SEGI_13221 Sequoiadendron giganteum HOM05M000431 ORTHO05M002466 8.2e-33 143.3 129 58.1
Aco031626 Ananas comosus HOM05M003486 ORTHO05M002466 2.4e-32 141.7 77 85.7
SEGI_04734 Sequoiadendron giganteum HOM05M001177 ORTHO05M002466 1.2e-31 139.4 104 65.4
Solyc09g050065.1 Solanum lycopersicum HOM05M003486 ORTHO05M002466 1.6e-31 139.0 114 63.2
AET1Gv20522900 Aegilops tauschii HOM05M003486 ORTHO05M002466 2.7e-31 138.3 73 86.3
Pahal.5G333600 Panicum hallii HOM05M003486 ORTHO05M002466 1.3e-30 136.0 77 87.0
Zosma05g21490 Zostera marina HOM05M003486 ORTHO05M002466 5.0e-30 134.0 118 55.9
DexiUA01G0020380 Digitaria exilis HOM05M003486 ORTHO05M002466 1.4e-27 125.9 105 53.3
Misin01G255900 Miscanthus sinensis HOM05M003486 ORTHO05M002466 1.8e-27 125.6 104 66.3
AET0Gv20166300 Aegilops tauschii HOM05M003486 ORTHO05M002466 2.3e-27 125.2 74 77.0
Mapoly0052s0079 Marchantia polymorpha HOM05M003486 ORTHO05M002466 3.0e-27 124.8 105 60.0
Asa7G04711 Allium sativum HOM05M003486 ORTHO05M002466 5.2e-27 124.0 76 76.3
Asa2G00021 Allium sativum HOM05M003486 ORTHO05M002466 1.5e-26 122.5 86 68.6
Aco025652 Ananas comosus HOM05M003486 ORTHO05M002466 1.3e-25 119.4 85 72.9
Aco026839 Ananas comosus HOM05M003486 ORTHO05M002466 1.3e-25 119.4 85 72.9
Solyc10g006910.3 Solanum lycopersicum HOM05M003486 ORTHO05M002466 2.8e-25 118.2 74 74.3
TRIDC6AG010690 Triticum dicoccoides HOM05M003486 ORTHO05M002466 3.7e-25 117.9 82 69.5
Asa0G02650 Allium sativum HOM05M003486 ORTHO05M002466 8.3e-25 116.7 93 64.5
Misin08G164600 Miscanthus sinensis HOM05M003486 ORTHO05M002466 2.3e-22 108.6 70 75.7
TRIDC5BG040430 Triticum dicoccoides HOM05M003486 ORTHO05M002466 8.6e-22 106.7 96 59.4
Asa4G02001 Allium sativum HOM05M003486 ORTHO05M002466 1.5e-21 105.9 75 68.0
Asa5G00078 Allium sativum HOM05M003486 ORTHO05M002466 1.5e-21 105.9 55 83.6
OsR498G0408024200.01 Oryza sativa ssp. indica HOM05M003486 ORTHO05M002466 1.6e-20 102.4 52 90.4
SEGI_19238 Sequoiadendron giganteum HOM05M003486 ORTHO05M002466 1.6e-20 102.4 69 66.7
Pp3c2_23477 Physcomitrium patens HOM05M002240 ORTHO05M002466 1.0e-19 99.8 122 41.0
AET0Gv20049900 Aegilops tauschii HOM05M003486 ORTHO05M002466 3.4e-18 94.7 53 86.8
Misin15G099900 Miscanthus sinensis HOM05M003486 ORTHO05M002466 9.8e-18 93.2 56 80.4
ATMG00080 Arabidopsis thaliana HOM05M002240 ORTHO05M002466 1.3e-17 92.8 130 41.5
Solyc00g500245.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 2.2e-17 92.0 135 40.7
Solyc09g015860.1 Solanum lycopersicum HOM05M002240 ORTHO05M002466 3.7e-17 91.3 131 39.7
CDE02G0251 Ceratophyllum demersum HOM05M002240 ORTHO05M004214 6.3e-17 90.5 134 41.0
AagrBONN_evm.TU.Sc2ySwM_117.831 Anthoceros agrestis HOM05M002240 ORTHO05M002466 8.3e-17 90.1 123 37.4
SMO059G0001 Selaginella moellendorffii HOM05M002240 ORTHO05M002466 8.3e-17 90.1 128 35.2
SMO172G0196 Selaginella moellendorffii HOM05M002240 ORTHO05M002466 8.3e-17 90.1 128 35.2
TRIDC3AG059440 Triticum dicoccoides HOM05M003486 ORTHO05M002466 2.4e-16 88.6 52 78.8
TRITD3Av1G240160 Triticum turgidum HOM05M003486 ORTHO05M002466 2.4e-16 88.6 52 78.8
Asa0G01349 Allium sativum HOM05M003486 ORTHO05M002466 3.1e-16 88.2 58 72.4
Solyc00g500309.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 3.1e-16 88.2 116 41.4
Solyc00g500100.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 5.4e-16 87.4 110 42.7
Solyc00g500117.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 5.4e-16 87.4 110 42.7
Solyc00g500274.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 5.4e-16 87.4 110 42.7
SEGI_40200 Sequoiadendron giganteum HOM05M002240 ORTHO05M004214 7.0e-16 87.0 126 39.7
MBI05_g05348_MAGBIO Magnolia biondii HOM05M002240 ORTHO05M004214 4.5e-15 84.3 131 37.4
OsKitaake02g253600 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 2.3e-14 82.0 48 85.4
AET0Gv20047500 Aegilops tauschii HOM05M003486 ORTHO05M002466 2.9e-14 81.6 48 83.3
TraesCS3D03G0435300 Triticum aestivum HOM05M002240 ORTHO05M002466 2.9e-14 81.6 130 37.7
GWHGASIY001869 Secale cereale HOM05M002240 ORTHO05M002466 5.0e-14 80.9 130 37.7
TraesCS5B03G1333400 Triticum aestivum HOM05M002240 ORTHO05M002466 5.0e-14 80.9 130 37.7
TRIDC1BG066780 Triticum dicoccoides HOM05M002240 ORTHO05M002466 5.0e-14 80.9 130 37.7
TRIDC5BG016020 Triticum dicoccoides HOM05M002240 ORTHO05M002466 5.0e-14 80.9 130 37.7
Solyc12g038985.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 6.6e-14 80.5 131 36.6
TraesCS5B03G1383700 Triticum aestivum HOM05M002240 ORTHO05M002466 6.6e-14 80.5 130 37.7
AET0Gv20038500 Aegilops tauschii HOM05M003486 ORTHO05M002466 1.1e-13 79.7 46 84.8
TraesCS2B03G1427800 Triticum aestivum HOM05M002240 ORTHO05M002466 1.1e-13 79.7 130 37.7
Aco025662 Ananas comosus HOM05M002240 ORTHO05M004214 1.9e-13 79.0 97 46.4
TraesCS7B03G1233500 Triticum aestivum HOM05M002240 ORTHO05M002466 1.9e-13 79.0 130 36.9
TraesCS3D03G0844800 Triticum aestivum HOM05M002240 ORTHO05M002466 2.5e-13 78.6 130 36.2
TraesCS5B03G0245400 Triticum aestivum HOM05M002240 ORTHO05M002466 2.5e-13 78.6 130 37.7
TRITD2Bv1G203980 Triticum turgidum HOM05M002240 ORTHO05M002466 2.5e-13 78.6 129 37.2
TRITD5Bv1G045820 Triticum turgidum HOM05M002240 ORTHO05M002466 2.5e-13 78.6 130 37.7
TRIDC1BG011870 Triticum dicoccoides HOM05M002240 ORTHO05M002466 3.3e-13 78.2 130 36.9
TRIDC7BG057140 Triticum dicoccoides HOM05M002240 ORTHO05M002466 3.3e-13 78.2 130 37.7
TRIDC4BG036410 Triticum dicoccoides HOM05M003486 ORTHO05M002466 5.6e-13 77.4 45 84.4
CALSI_Maker00001003 Calamus simplicifolius HOM05M002240 ORTHO05M002466 1.2e-12 76.3 77 49.4
TraesCS4D03G0302500 Triticum aestivum HOM05M002240 ORTHO05M002466 1.2e-12 76.3 130 36.2
Zm00007a00045066 Zea mays B104 HOM05M002240 ORTHO05M004214 1.6e-12 75.9 133 36.1
TraesCS7B03G1164100 Triticum aestivum HOM05M002240 ORTHO05M002466 2.1e-12 75.5 115 37.4
TRITD1Bv1G187820 Triticum turgidum HOM05M002240 ORTHO05M002466 2.1e-12 75.5 129 36.4
Seita.J007700 Setaria italica HOM05M002240 ORTHO05M002466 2.8e-12 75.1 97 45.4
Solyc05g045780.1 Solanum lycopersicum HOM05M002240 ORTHO05M002466 2.8e-12 75.1 74 48.6
TraesCS5D03G1191900 Triticum aestivum HOM05M002240 ORTHO05M002466 2.8e-12 75.1 130 37.7
Zm00007a00014869 Zea mays B104 HOM05M002240 ORTHO05M004214 4.7e-12 74.3 132 35.6
Asa0G00752 Allium sativum HOM05M003486 ORTHO05M002466 8.0e-12 73.6 45 77.8
TRITD1Bv1G017010 Triticum turgidum HOM05M002240 ORTHO05M002466 1.4e-11 72.8 129 36.4
TRITD4Av1G104840 Triticum turgidum HOM05M002240 ORTHO05M002466 1.4e-11 72.8 102 39.2
Asa0G04467 Allium sativum HOM05M003486 ORTHO05M002466 3.0e-11 71.6 47 74.5
TRITD7Bv1G175110 Triticum turgidum HOM05M001586 ORTHO05M001487 4.0e-11 71.2 40 87.5
AET4Gv20518900 Aegilops tauschii HOM05M003486 ORTHO05M002466 6.8e-11 70.5 46 76.1
TRITD1Bv1G017040 Triticum turgidum HOM05M002240 ORTHO05M002466 6.8e-11 70.5 129 34.1
Cre06.g278224 Chlamydomonas reinhardtii HOM05M002240 ORTHO05M002466 1.2e-10 69.7 102 32.4
TraesCS5D03G0192200 Triticum aestivum HOM05M002240 ORTHO05M002466 1.5e-10 69.3 128 34.4
Misin13G053600 Miscanthus sinensis HOM05M002240 ORTHO05M002466 2.0e-10 68.9 78 46.2
Solyc08g074700.1 Solanum lycopersicum HOM05M002240 ORTHO05M002466 4.4e-10 67.8 57 50.9
TRITD1Bv1G017090 Triticum turgidum HOM05M002240 ORTHO05M002466 7.5e-10 67.0 112 34.8
TRITD7Bv1G192430 Triticum turgidum HOM05M002240 ORTHO05M002466 7.5e-10 67.0 115 34.8
OsKitaake12g154201 Oryza sativa Kitaake HOM05M002240 ORTHO05M002466 2.9e-09 65.1 71 46.5
Pahal.9G199600 Panicum hallii HOM05M002240 ORTHO05M002466 6.4e-09 63.9 71 46.5
GWHGAZTO047827 Oryza alta HOM05M002240 ORTHO05M002466 1.4e-08 62.8 84 41.7
Zosma07g02140 Zostera marina HOM05M000431 ORTHO05M000765 3.2e-08 61.6 97 35.1
TRIDC2BG038930 Triticum dicoccoides HOM05M003486 ORTHO05M002466 9.2e-08 60.1 34 85.3
Solyc05g045840.1 Solanum lycopersicum HOM05M002240 ORTHO05M002466 1.2e-07 59.7 78 39.7
Solyc05g045920.1 Solanum lycopersicum HOM05M002240 ORTHO05M002466 8.6e-06 53.5 100 33.0


User provided reference genes

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