Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g097300 Oryza sativa Kitaake HOM05M007349 ORTHO05M009324 1.9e-151 538.9 382 100.0
Os11g0264200 Oryza sativa ssp. japonica HOM05M007349 ORTHO05M009324 1.9e-151 538.9 382 100.0
OsR498G1119754700.01 Oryza sativa ssp. indica HOM05M007349 ORTHO05M009324 7.1e-151 537.0 382 98.7
GWHGAZTO063316 Oryza alta HOM05M007349 ORTHO05M009324 1.9e-140 502.3 382 95.0
GWHGAZTO011219 Oryza alta HOM05M007349 ORTHO05M009324 2.5e-140 501.9 382 95.0
OB11G17120 Oryza brachyantha HOM05M007349 ORTHO05M009324 2.6e-124 448.7 382 88.7
PH02Gene41001 Phyllostachys edulis HOM05M007349 ORTHO05M009324 4.7e-118 427.9 382 79.8
V3.Lp_chr4_0G10394 Lolium perenne HOM05M007349 ORTHO05M009324 4.8e-115 417.9 380 80.5
Seita.8G074100 Setaria italica HOM05M007349 ORTHO05M009324 5.3e-114 414.5 382 78.5
Sevir.8G074800 Setaria viridis HOM05M007349 ORTHO05M009324 2.7e-113 412.1 382 78.3
Pahal.8G063800 Panicum hallii HOM05M007349 ORTHO05M009324 1.3e-112 409.8 382 73.8
Sspon.05G0017150-1P Saccharum spontaneum HOM05M007349 ORTHO05M009324 1.9e-111 406.0 382 75.7
Misin09G072600 Miscanthus sinensis HOM05M007349 ORTHO05M009324 2.5e-111 405.6 382 74.3
GWHGASIY008479 Secale cereale HOM05M007349 ORTHO05M009324 2.5e-111 405.6 382 80.9
Sobic.005G079900 Sorghum bicolor HOM05M007349 ORTHO05M009324 1.8e-109 399.4 382 73.3
TraesCS4A03G0611200 Triticum aestivum HOM05M007349 ORTHO05M009324 8.8e-109 397.1 382 82.5
TRIDC4AG036440 Triticum dicoccoides HOM05M007349 ORTHO05M009324 8.8e-109 397.1 382 82.5
AET4Gv20175100 Aegilops tauschii HOM05M007349 ORTHO05M009324 1.2e-108 396.7 382 81.9
TraesCS4D03G0159300 Triticum aestivum HOM05M007349 ORTHO05M009324 1.2e-108 396.7 382 81.9
TRIDC4BG013290 Triticum dicoccoides HOM05M007349 ORTHO05M009324 4.4e-108 394.8 382 81.7
GWHGAORA011474 Cenchrus purpureus HOM05M007349 ORTHO05M009324 1.8e-106 389.4 382 74.6
Sspon.05G0017150-2C Saccharum spontaneum HOM05M007349 ORTHO05M009324 5.9e-105 384.4 366 76.0
TraesCS4B03G0193100 Triticum aestivum HOM05M007349 ORTHO05M009324 1.7e-104 382.9 382 80.9
Misin10G061300 Miscanthus sinensis HOM05M007349 ORTHO05M009324 7.5e-100 367.5 382 74.1
Sspon.05G0017150-1A Saccharum spontaneum HOM05M007349 ORTHO05M009324 1.7e-99 366.3 366 77.6
Horvu_MOREX_4H01G094200 Hordeum vulgare HOM05M007349 ORTHO05M009324 9.8e-92 340.5 382 76.4
EJB05_37027 Eragrostis curvula HOM05M007349 ORTHO05M009324 1.7e-88 329.7 379 60.7
Bradi4g20728 Brachypodium distachyon HOM05M007349 ORTHO05M009324 3.0e-88 328.9 382 74.3
Ot_Un159_g25195 Oropetium thomaeum HOM05M007349 ORTHO05M009324 8.6e-88 327.4 382 67.8
Zm00001eb112540 Zea mays B73 HOM05M007349 ORTHO05M009324 1.7e-80 303.1 379 68.9
TRITD4Av1G174160 Triticum turgidum HOM05M007349 ORTHO05M009324 2.8e-78 295.8 321 82.9
TRITD4Bv1G029370 Triticum turgidum HOM05M007349 ORTHO05M009324 3.7e-75 285.4 322 81.4
Zm00007a00038164 Zea mays B104 HOM05M007349 ORTHO05M009324 3.9e-72 275.4 361 68.7
Ma08_g29480 Musa acuminata HOM05M007349 ORTHO05M009324 1.6e-65 253.4 380 44.5
DDU469G0155 Dioscorea dumetorum HOM05M007349 ORTHO05M009324 3.3e-63 245.7 316 50.6
DDU470G0023 Dioscorea dumetorum HOM05M007349 ORTHO05M009324 2.6e-60 236.1 292 52.1
DDU725G0003 Dioscorea dumetorum HOM05M007349 ORTHO05M009324 4.4e-60 235.3 292 52.1
evm.TU.AsparagusV1_09.504.V1.1 Asparagus officinalis HOM05M007349 ORTHO05M009324 2.2e-59 233.0 381 49.6
Zm00001eb182340 Zea mays B73 HOM05M007349 ORTHO05M009324 1.9e-58 229.9 187 58.8
HPP92_024394 Vanilla planifolia HOM05M007349 ORTHO05M009324 2.1e-57 226.5 322 53.1
GWHGAORA042572 Cenchrus purpureus HOM05M007349 ORTHO05M009324 3.0e-56 222.6 283 72.4
p5.00_sc00006_p0142 Elaeis guineensis HOM05M007349 ORTHO05M009324 1.1e-55 220.7 287 55.4
Spipo13G0014700 Spirodela polyrhiza HOM05M007349 ORTHO05M009324 3.1e-45 186.0 368 37.5
Asa2G05651 Allium sativum HOM05M007349 ORTHO05M009324 2.9e-43 179.5 276 53.6
Zm00001eb048880 Zea mays B73 HOM05M007349 ORTHO05M009324 4.6e-41 172.2 111 70.3
AT3G07550 Arabidopsis thaliana HOM05M007349 ORTHO05M009324 7.4e-39 164.9 297 43.1
Zm00007a00003560 Zea mays B104 HOM05M007349 ORTHO05M009324 3.4e-36 156.0 138 53.6
CALSI_Maker00012210 Calamus simplicifolius HOM05M007349 ORTHO05M002141 5.8e-36 155.2 108 65.7
CALSI_Maker00038642 Calamus simplicifolius HOM05M007349 ORTHO05M002141 5.8e-36 155.2 108 65.7
SEGI_17775 Sequoiadendron giganteum HOM05M007349 ORTHO05M009324 6.1e-33 145.2 295 42.4
Solyc06g007680.1 Solanum lycopersicum HOM05M007349 ORTHO05M009324 1.4e-29 134.0 383 38.6
CDE08G0319 Ceratophyllum demersum HOM05M007349 ORTHO05M009324 6.9e-29 131.7 107 57.9
Glyma.07G060100 Glycine max HOM05M007349 ORTHO05M009324 2.0e-28 130.2 287 55.4
Asa5G02979 Allium sativum HOM05M007349 ORTHO05M009324 1.3e-27 127.5 92 62.0
Potri.017G056400 Populus trichocarpa HOM05M007349 ORTHO05M009324 1.0e-24 117.9 291 43.6
ATR0743G036 Amborella trichopoda HOM05M007349 ORTHO05M009324 3.9e-24 115.9 264 48.5
Zm00001eb169070 Zea mays B73 HOM05M007349 ORTHO05M009324 2.2e-14 83.6 50 68.0
Zm00001eb293000 Zea mays B73 HOM05M007349 ORTHO05M009324 2.8e-14 83.2 47 74.5
Mapoly0166s0007 Marchantia polymorpha HOM05M007349 ORTHO05M009324 1.0e-11 74.7 272 40.1
Zjn_sc00249.1.g00050.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M007349 ORTHO05M009324 3.6e-09 66.2 41 73.2
Aco019213 Ananas comosus HOM05M007349 ORTHO05M009324 2.6e-07 60.1 75 46.7


User provided reference genes

Program Settings