Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g086500 Oryza sativa Kitaake HOM05M002859 ORTHO05M003236 2.1e-258 894.4 452 100.0
Os11g0240900 Oryza sativa ssp. japonica HOM05M002859 ORTHO05M003236 2.1e-258 894.4 452 100.0
OsR498G1119683100.01 Oryza sativa ssp. indica HOM05M002859 ORTHO05M003236 5.1e-257 889.8 452 99.8
GWHGAZTO011085 Oryza alta HOM05M002859 ORTHO05M003236 4.5e-245 850.1 452 94.9
GWHGAZTO063037 Oryza alta HOM05M002859 ORTHO05M003236 1.4e-238 828.6 452 93.1
PH02Gene30631 Phyllostachys edulis HOM05M002859 ORTHO05M003236 1.5e-208 728.8 452 82.3
PH02Gene42705 Phyllostachys edulis HOM05M002859 ORTHO05M003236 1.2e-205 719.2 452 80.1
V3.Lp_chr4_0G10612 Lolium perenne HOM05M002859 ORTHO05M003236 2.5e-203 711.4 457 79.2
Horvu_MOREX_4H01G100200 Hordeum vulgare HOM05M002859 ORTHO05M003236 1.5e-200 702.2 453 78.1
GWHGASIY018792 Secale cereale HOM05M002859 ORTHO05M003236 1.4e-198 695.7 453 77.0
TraesCS4B03G0206500 Triticum aestivum HOM05M002859 ORTHO05M003236 2.4e-198 694.9 460 76.7
TraesCS4D03G0170900 Triticum aestivum HOM05M002859 ORTHO05M003236 6.0e-197 690.3 460 76.3
OB11G16210 Oryza brachyantha HOM05M002859 ORTHO05M003236 2.6e-192 674.9 371 91.1
Pahal.8G072400 Panicum hallii HOM05M002859 ORTHO05M003236 2.2e-191 671.8 441 77.1
TraesCS4A03G0600900 Triticum aestivum HOM05M002859 ORTHO05M003236 2.4e-190 668.3 453 75.3
TRITD4Av1G167960 Triticum turgidum HOM05M002859 ORTHO05M003236 2.4e-190 668.3 453 75.3
Bradi4g21680 Brachypodium distachyon HOM05M002859 ORTHO05M003236 6.0e-189 663.7 459 75.2
Sobic.005G088900 Sorghum bicolor HOM05M002859 ORTHO05M003236 6.6e-188 660.2 468 73.3
GWHGAORA042494 Cenchrus purpureus HOM05M002859 ORTHO05M003236 9.6e-187 656.4 441 76.0
Misin10G069200 Miscanthus sinensis HOM05M002859 ORTHO05M003236 2.8e-186 654.8 466 72.7
TRITD4Bv1G032140 Triticum turgidum HOM05M002859 ORTHO05M003236 1.3e-183 646.0 453 73.3
TRIDC4AG035910 Triticum dicoccoides HOM05M002859 ORTHO05M003236 1.4e-182 642.5 390 81.0
Zm00001eb112220 Zea mays B73 HOM05M002859 ORTHO05M003236 2.1e-181 638.6 464 72.0
Zm00001eb167940 Zea mays B73 HOM05M002859 ORTHO05M003236 1.8e-177 625.5 458 72.1
PH02Gene20133 Phyllostachys edulis HOM05M002859 ORTHO05M003236 2.9e-175 618.2 440 72.0
PH02Gene30723 Phyllostachys edulis HOM05M002859 ORTHO05M003236 3.2e-174 614.8 440 71.6
AET5Gv20281600 Aegilops tauschii HOM05M002859 ORTHO05M003236 1.2e-173 612.8 430 72.3
TraesCS5D03G0308700 Triticum aestivum HOM05M002859 ORTHO05M003236 1.2e-173 612.8 430 72.3
GWHGASIY025191 Secale cereale HOM05M002859 ORTHO05M003236 2.1e-173 612.1 430 72.1
Bradi4g40507 Brachypodium distachyon HOM05M002859 ORTHO05M003236 3.5e-173 611.3 437 71.9
Horvu_MOREX_5H01G196300 Hordeum vulgare HOM05M002859 ORTHO05M003236 7.9e-173 610.1 430 72.1
TRITD5Bv1G061520 Triticum turgidum HOM05M002859 ORTHO05M003236 7.9e-173 610.1 429 72.0
Misin09G088700 Miscanthus sinensis HOM05M002859 ORTHO05M003236 1.0e-172 609.8 430 72.6
TRIDC5BG019070 Triticum dicoccoides HOM05M002859 ORTHO05M003236 3.9e-172 607.8 448 70.3
TraesCS5A03G0296600 Triticum aestivum HOM05M002859 ORTHO05M003236 1.1e-171 606.3 430 71.9
OsKitaake12g065400 Oryza sativa Kitaake HOM05M002859 ORTHO05M003236 2.5e-171 605.1 431 70.5
GWHGAZTO014293 Oryza alta HOM05M002859 ORTHO05M003236 7.4e-171 603.6 437 70.0
GWHGAZTO065919 Oryza alta HOM05M002859 ORTHO05M003236 6.2e-170 600.5 437 69.6
EJB05_02754 Eragrostis curvula HOM05M002859 ORTHO05M003236 8.1e-170 600.1 440 70.5
EJB05_02789 Eragrostis curvula HOM05M002859 ORTHO05M003236 2.4e-169 598.6 440 70.2
TRIDC5AG017520 Triticum dicoccoides HOM05M002859 ORTHO05M003236 1.5e-168 595.9 430 71.4
TRITD5Av1G075100 Triticum turgidum HOM05M002859 ORTHO05M003236 1.5e-168 595.9 429 71.1
Pahal.3G055500 Panicum hallii HOM05M002859 ORTHO05M003236 2.6e-168 595.1 447 69.6
Sspon.05G0028590-2C Saccharum spontaneum HOM05M002859 ORTHO05M003236 2.6e-168 595.1 509 64.0
Sobic.008G070800 Sorghum bicolor HOM05M002859 ORTHO05M003236 1.3e-167 592.8 432 69.7
TraesCS5B03G0303900 Triticum aestivum HOM05M002859 ORTHO05M003236 1.3e-167 592.8 455 68.8
GWHGAORA040003 Cenchrus purpureus HOM05M002859 ORTHO05M003236 1.1e-166 589.7 431 69.8
Misin14G078300 Miscanthus sinensis HOM05M002859 ORTHO05M003236 1.1e-166 589.7 432 69.2
Sevir.7G287300 Setaria viridis HOM05M002859 ORTHO05M003236 7.1e-166 587.0 449 68.4
Seita.7G276200 Setaria italica HOM05M002859 ORTHO05M003236 1.6e-165 585.9 449 68.2
Misin15G095500 Miscanthus sinensis HOM05M002859 ORTHO05M003236 3.5e-165 584.7 432 68.8
Ot_Chr2_g10743 Oropetium thomaeum HOM05M002859 ORTHO05M003236 3.4e-160 568.2 426 69.7
Sspon.05G0028590-1B Saccharum spontaneum HOM05M002859 ORTHO05M003236 2.9e-159 565.1 418 69.4
GWHGAORA005170 Cenchrus purpureus HOM05M002859 ORTHO05M003236 1.1e-158 563.1 433 68.1
V3.Lp_chr5_0G6626 Lolium perenne HOM05M002859 ORTHO05M003236 1.3e-156 556.2 378 74.1
OB12G15410 Oryza brachyantha HOM05M002859 ORTHO05M003236 6.7e-156 553.9 380 72.9
Seita.8G082900 Setaria italica HOM05M002859 ORTHO05M003236 8.7e-156 553.5 384 73.2
Sevir.8G084600 Setaria viridis HOM05M002859 ORTHO05M003236 8.7e-156 553.5 384 73.2
GWHGAORA005156 Cenchrus purpureus HOM05M002859 ORTHO05M003236 4.2e-150 534.6 380 71.3
p5.00_sc00045_p0025 Elaeis guineensis HOM05M002859 ORTHO05M003236 9.3e-150 533.5 430 63.3
Aco003365 Ananas comosus HOM05M002859 ORTHO05M003236 2.8e-146 521.9 450 61.3
GWHGAORA011545 Cenchrus purpureus HOM05M002859 ORTHO05M003236 3.9e-140 501.5 424 64.9
evm.TU.AsparagusV1_09.331.V1.1 Asparagus officinalis HOM05M002859 ORTHO05M003236 7.4e-139 497.3 423 61.9
Sspon.07G0029860-2C Saccharum spontaneum HOM05M002859 ORTHO05M003236 3.7e-138 495.0 429 63.2
Spipo9G0051200 Spirodela polyrhiza HOM05M002859 ORTHO05M003236 1.7e-135 486.1 425 60.2
Zm00007a00031805 Zea mays B104 HOM05M002859 ORTHO05M003236 3.6e-133 478.4 339 70.5
evm.TU.AsparagusV1_02.570.V1.1 Asparagus officinalis HOM05M002859 ORTHO05M003236 4.7e-133 478.0 422 59.7
MBI10_g20270_MAGBIO Magnolia biondii HOM05M002859 ORTHO05M003236 1.3e-130 469.9 426 56.8
CDE05G2224 Ceratophyllum demersum HOM05M002859 ORTHO05M003236 6.3e-130 467.6 442 55.9
Sspon.05G0026890-1B Saccharum spontaneum HOM05M002859 ORTHO05M003236 4.1e-129 464.9 406 61.6
Ma06_g09040 Musa acuminata HOM05M002859 ORTHO05M003236 5.3e-129 464.5 430 56.5
Potri.017G122600 Populus trichocarpa HOM05M002859 ORTHO05M003236 2.6e-128 462.2 415 57.3
ATR1089G159 Amborella trichopoda HOM05M002859 ORTHO05M003236 1.5e-126 456.4 434 56.0
Asa3G02274 Allium sativum HOM05M002859 ORTHO05M003236 3.2e-126 455.3 428 57.7
Glyma.02G005000 Glycine max HOM05M002859 ORTHO05M003236 2.7e-125 452.2 429 55.5
AET4Gv20186800 Aegilops tauschii HOM05M002859 ORTHO05M003236 4.7e-125 451.4 322 70.5
DDU445G0163 Dioscorea dumetorum HOM05M002859 ORTHO05M003236 4.4e-123 444.9 436 55.3
Asa8G04154 Allium sativum HOM05M002859 ORTHO05M003236 1.4e-121 439.9 434 53.5
CALSI_Maker00040700 Calamus simplicifolius HOM05M002859 ORTHO05M003236 1.2e-120 436.8 430 56.3
HPP92_005635 Vanilla planifolia HOM05M002859 ORTHO05M003236 2.0e-120 436.0 350 64.9
CDE05G3168 Ceratophyllum demersum HOM05M002859 ORTHO05M003236 4.2e-118 428.3 433 53.8
Mapoly0005s0018 Marchantia polymorpha HOM05M002859 ORTHO05M003236 5.2e-116 421.4 428 53.3
AT5G18420 Arabidopsis thaliana HOM05M002859 ORTHO05M003236 1.2e-112 410.2 433 50.3
Potri.004G092400 Populus trichocarpa HOM05M002859 ORTHO05M003236 6.5e-111 404.4 395 53.4
Glyma.10G003500 Glycine max HOM05M002859 ORTHO05M003236 1.5e-110 403.3 400 53.0
EJB05_28484 Eragrostis curvula HOM05M002859 ORTHO05M003236 1.9e-110 402.9 318 65.4
EJB05_28494 Eragrostis curvula HOM05M002859 ORTHO05M003236 1.9e-110 402.9 318 65.4
Pp3c20_12330 Physcomitrium patens HOM05M002859 ORTHO05M003236 6.1e-109 397.9 431 51.0
CBR_g22449 Chara braunii HOM05M002859 ORTHO05M003236 2.3e-108 396.0 435 52.0
Pp3c24_6950 Physcomitrium patens HOM05M002859 ORTHO05M003236 5.7e-107 391.3 431 50.1
Pp3c23_1780 Physcomitrium patens HOM05M002859 ORTHO05M003236 7.3e-102 374.4 350 56.6
MBI06_g32154_MAGBIO Magnolia biondii HOM05M002859 ORTHO05M003236 1.2e-101 373.6 412 48.1
Zosma03g36560 Zostera marina HOM05M002859 ORTHO05M003236 2.8e-101 372.5 431 49.7
Zm00007a00049750 Zea mays B104 HOM05M002859 ORTHO05M003236 2.3e-100 369.4 303 65.3
Dexi8B01G0006760 Digitaria exilis HOM05M002859 ORTHO05M003236 1.2e-96 357.1 316 61.1
Dexi3A01G0005430 Digitaria exilis HOM05M002859 ORTHO05M003236 1.3e-95 353.6 444 48.0
Dexi8A01G0007840 Digitaria exilis HOM05M002859 ORTHO05M003236 5.8e-91 338.2 334 55.7
SMO196G0070 Selaginella moellendorffii HOM05M002859 ORTHO05M003236 5.8e-91 338.2 275 62.5
OsR498G1221087900.01 Oryza sativa ssp. indica HOM05M002859 ORTHO05M003236 4.6e-88 328.6 276 60.9
Dexi3B01G0005400 Digitaria exilis HOM05M002859 ORTHO05M003236 8.9e-84 314.3 407 46.9
Zm00001eb138450 Zea mays B73 HOM05M002859 ORTHO05M003236 2.2e-82 309.7 269 57.6
Sspon.05G0026890-2C Saccharum spontaneum HOM05M002859 ORTHO05M003236 1.3e-79 300.4 265 62.6
Zm00007a00043421 Zea mays B104 HOM05M002859 ORTHO05M003236 3.8e-74 282.3 160 85.6
Zm00007a00047908 Zea mays B104 HOM05M002859 ORTHO05M003236 3.0e-71 272.7 159 84.3
Sspon.07G0029860-3D Saccharum spontaneum HOM05M002859 ORTHO05M003236 6.6e-71 271.6 413 42.1
Os12g0197900 Oryza sativa ssp. japonica HOM05M002859 ORTHO05M003236 1.5e-67 260.4 141 89.4
Solyc04g024510.3 Solanum lycopersicum HOM05M002859 ORTHO05M003236 1.1e-65 254.2 157 80.9
SEGI_14103 Sequoiadendron giganteum HOM05M002859 ORTHO05M000002 7.8e-64 248.1 156 79.5
Sspon.05G0028590-3D Saccharum spontaneum HOM05M002859 ORTHO05M003236 3.6e-61 239.2 219 62.1
HPP92_005645 Vanilla planifolia HOM05M002859 ORTHO05M003236 1.5e-59 233.8 145 77.9
Solyc04g024500.3 Solanum lycopersicum HOM05M002859 ORTHO05M003236 9.3e-57 224.6 267 45.7
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05M002859 ORTHO05M003236 4.6e-56 222.2 323 39.6
Cre17.g726800 Chlamydomonas reinhardtii HOM05M002859 ORTHO05M003236 3.4e-51 206.1 514 35.0
Dexi8A01G0007830 Digitaria exilis HOM05M002859 ORTHO05M003236 1.5e-46 190.7 151 65.6
EJB05_28483 Eragrostis curvula HOM05M002859 ORTHO05M003236 1.5e-46 190.7 109 88.1
EJB05_28493 Eragrostis curvula HOM05M002859 ORTHO05M003236 1.5e-46 190.7 109 88.1
Dexi8B01G0006750 Digitaria exilis HOM05M002859 ORTHO05M003236 3.3e-46 189.5 151 64.9
HPP92_005646 Vanilla planifolia HOM05M002859 ORTHO05M003236 2.1e-40 170.2 230 44.8
Zm00007a00047907 Zea mays B104 HOM05M002859 ORTHO05M003236 3.3e-38 162.9 135 64.4
Sspon.07G0029870-1B Saccharum spontaneum HOM05M002859 ORTHO05M003236 3.4e-35 152.9 351 33.0
Sspon.07G0029870-2C Saccharum spontaneum HOM05M002859 ORTHO05M003236 3.4e-35 152.9 351 33.0
Sspon.07G0029860-1B Saccharum spontaneum HOM05M002859 ORTHO05M003236 1.2e-32 144.4 138 52.2
HPP92_005679 Vanilla planifolia HOM05M002859 ORTHO05M003236 1.1e-28 131.3 291 32.3
MCO14G229 Micromonas commoda HOM05M002859 ORTHO05M003236 6.7e-23 112.1 215 36.3
PRCOL_00001851 Prasinoderma coloniale HOM05M002859 ORTHO05M003236 2.1e-16 90.5 195 32.8
EJB05_02665 Eragrostis curvula HOM05M016498 ORTHO05M020547 1.8e-15 87.4 146 39.7
Asa3G02292 Allium sativum HOM05M002859 ORTHO05M003236 4.4e-14 82.8 145 37.9
EJB05_02526 Eragrostis curvula HOM05M016498 ORTHO05M013623 2.6e-11 73.6 174 33.9
Zjn_sc00031.1.g04280.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M002859 ORTHO05M003236 4.5e-11 72.8 82 51.2
MisinT098700 Miscanthus sinensis HOM05M002859 ORTHO05M003236 1.5e-09 67.8 85 54.1
Zjn_sc00028.1.g00610.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002859 ORTHO05M003236 5.2e-07 59.3 288 25.7


User provided reference genes

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