Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0214100 Oryza sativa ssp. japonica HOM05M000141 ORTHO05M199534 2.5e-50 201.4 133 100.0
Os11g0214700 Oryza sativa ssp. japonica HOM05M000141 ORTHO05M024881 8.3e-22 106.7 110 60.9
OB11G15340 Oryza brachyantha HOM05M000141 ORTHO05M000085 1.4e-21 105.9 115 64.3
OsR498G1119617700.01 Oryza sativa ssp. indica HOM05M000141 ORTHO05M000085 2.4e-21 105.1 110 63.6
OsKitaake11g073600 Oryza sativa Kitaake HOM05M000141 ORTHO05M000085 5.4e-21 104.0 110 68.2
Os11g0214900 Oryza sativa ssp. japonica HOM05M000141 ORTHO05M000085 5.4e-21 104.0 110 68.2
Sevir.8G099400 Setaria viridis HOM05M000141 ORTHO05M000085 6.0e-20 100.5 118 50.0
PH02Gene30336 Phyllostachys edulis HOM05M000141 ORTHO05M000085 7.8e-20 100.1 110 52.7
Seita.8G096800 Setaria italica HOM05M000141 ORTHO05M000085 1.5e-18 95.9 118 48.3
AET4Gv20224300 Aegilops tauschii HOM05M000141 ORTHO05M000085 4.3e-18 94.4 113 53.1
TraesCS4D03G0205600 Triticum aestivum HOM05M000141 ORTHO05M000085 4.3e-18 94.4 113 53.1
Bradi4g22270 Brachypodium distachyon HOM05M000141 ORTHO05M000085 1.6e-17 92.4 115 50.4
TraesCS4B03G0242900 Triticum aestivum HOM05M000141 ORTHO05M000085 1.6e-17 92.4 113 52.2
TRIDC4BG016540 Triticum dicoccoides HOM05M000141 ORTHO05M000085 1.6e-17 92.4 113 52.2
TRITD4Bv1G040730 Triticum turgidum HOM05M000141 ORTHO05M000085 1.6e-17 92.4 113 52.2
OsKitaake11g073400 Oryza sativa Kitaake HOM05M000141 ORTHO05M000085 2.1e-17 92.0 105 57.1
Os11g0214400 Oryza sativa ssp. japonica HOM05M000141 ORTHO05M000085 2.1e-17 92.0 105 57.1
GWHGASIY019039 Secale cereale HOM05M000141 ORTHO05M000085 3.6e-17 91.3 114 53.5
Horvu_MOREX_4H01G108000 Hordeum vulgare HOM05M000141 ORTHO05M000085 6.2e-17 90.5 113 51.3
TraesCS4A03G0542300 Triticum aestivum HOM05M000141 ORTHO05M000085 2.3e-16 88.6 113 51.3
TRIDC4AG032310 Triticum dicoccoides HOM05M000141 ORTHO05M000085 2.3e-16 88.6 113 51.3
TRITD4Av1G157540 Triticum turgidum HOM05M000141 ORTHO05M000085 2.3e-16 88.6 113 51.3
TRIDC4BG001150 Triticum dicoccoides HOM05M000141 ORTHO05M000085 3.1e-16 88.2 110 48.2
Sobic.005G102300 Sorghum bicolor HOM05M000141 ORTHO05M000085 4.0e-16 87.8 119 47.1
Zjn_sc00207.1.g00210.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000141 ORTHO05M000085 4.0e-16 87.8 126 46.8
Sspon.05G0016090-1A Saccharum spontaneum HOM05M000141 ORTHO05M000085 5.2e-16 87.4 122 59.0
TRITD4Bv1G000730 Triticum turgidum HOM05M000141 ORTHO05M000085 5.2e-16 87.4 110 48.2
EJB05_28380 Eragrostis curvula HOM05M000141 ORTHO05M000085 8.9e-16 86.7 118 47.5
Sspon.05G0016090-3C Saccharum spontaneum HOM05M000141 ORTHO05M000085 8.9e-16 86.7 122 59.0
TraesCS4B03G0009600 Triticum aestivum HOM05M000141 ORTHO05M000085 1.2e-15 86.3 110 47.3
TRITD7Av1G046160 Triticum turgidum HOM05M000141 ORTHO05M000085 3.4e-15 84.7 110 46.4
Pahal.8G109800 Panicum hallii HOM05M000141 ORTHO05M000085 4.4e-15 84.3 117 45.3
GWHGAORA011659 Cenchrus purpureus HOM05M000141 ORTHO05M000085 5.8e-15 84.0 123 45.5
GWHGAORA042364 Cenchrus purpureus HOM05M000141 ORTHO05M000085 5.8e-15 84.0 125 43.2
Sspon.05G0016090-2B Saccharum spontaneum HOM05M000141 ORTHO05M000085 5.8e-15 84.0 119 45.4
GWHGASIY037693 Secale cereale HOM05M000141 ORTHO05M000085 5.8e-15 84.0 114 44.7
AET4Gv20708400 Aegilops tauschii HOM05M000141 ORTHO05M000085 1.3e-14 82.8 112 43.8
TraesCS4D03G0690100 Triticum aestivum HOM05M000141 ORTHO05M000085 1.3e-14 82.8 112 43.8
Horvu_MOREX_4H01G441400 Hordeum vulgare HOM05M000141 ORTHO05M000085 3.7e-14 81.3 112 42.9
TraesCS4B03G0768400 Triticum aestivum HOM05M000141 ORTHO05M000085 8.3e-14 80.1 112 42.0
TRIDC4BG049990 Triticum dicoccoides HOM05M000141 ORTHO05M000085 8.3e-14 80.1 112 42.0
TRITD4Bv1G171020 Triticum turgidum HOM05M000141 ORTHO05M000085 8.3e-14 80.1 112 42.0
Misin10G156300 Miscanthus sinensis HOM05M000141 ORTHO05M000085 1.4e-13 79.3 111 38.7
Zjn_sc00207.1.g00200.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000141 ORTHO05M000085 7.0e-13 77.0 78 53.8
GWHGAORA011678 Cenchrus purpureus HOM05M000141 ORTHO05M000085 9.2e-13 76.6 113 44.2
V3.Lp_chr4_0G11044 Lolium perenne HOM05M046785 ORTHO05M024881 9.2e-13 76.6 70 60.0
TraesCS4A03G0020800 Triticum aestivum HOM05M000141 ORTHO05M000085 9.2e-13 76.6 108 41.7
TRIDC4AG001640 Triticum dicoccoides HOM05M000141 ORTHO05M000085 9.2e-13 76.6 108 41.7
Zm00001eb166630 Zea mays B73 HOM05M000141 ORTHO05M000085 1.2e-12 76.3 108 50.0
Zm00007a00028058 Zea mays B104 HOM05M000141 ORTHO05M000085 1.2e-12 76.3 108 50.0
Sobic.005G192600 Sorghum bicolor HOM05M000141 ORTHO05M000085 1.6e-12 75.9 110 47.3
Pahal.8G083600 Panicum hallii HOM05M000141 ORTHO05M000085 2.1e-12 75.5 106 41.5
Sspon.06G0026320-1B Saccharum spontaneum HOM05M000141 ORTHO05M000085 2.1e-12 75.5 110 39.1
Sspon.06G0026320-2C Saccharum spontaneum HOM05M000141 ORTHO05M000085 2.1e-12 75.5 110 39.1
Sspon.06G0026320-3D Saccharum spontaneum HOM05M000141 ORTHO05M000085 2.1e-12 75.5 110 39.1
Horvu_MOREX_4H01G107600 Hordeum vulgare HOM05M000141 ORTHO05M000085 2.7e-12 75.1 107 45.8
GWHGAZTO011450 Oryza alta HOM05M000141 ORTHO05M000085 4.6e-12 74.3 104 43.3
GWHGASIY019037 Secale cereale HOM05M000141 ORTHO05M000085 4.6e-12 74.3 120 42.5
TRITD4Av1G003590 Triticum turgidum HOM05M000141 ORTHO05M000085 4.6e-12 74.3 108 40.7
GWHGAORA042348 Cenchrus purpureus HOM05M000141 ORTHO05M000085 6.0e-12 73.9 110 40.9
V3.Lp_chr4_0G10142 Lolium perenne HOM05M000141 ORTHO05M000085 7.8e-12 73.6 112 41.1
Bradi4g22810 Brachypodium distachyon HOM05M000141 ORTHO05M000085 1.3e-11 72.8 113 41.6
PH02Gene27725 Phyllostachys edulis HOM05M000141 ORTHO05M000085 2.3e-11 72.0 117 42.7
EJB05_28384 Eragrostis curvula HOM05M000141 ORTHO05M000085 1.5e-10 69.3 75 49.3
OB11G18330 Oryza brachyantha HOM05M000141 ORTHO05M000085 1.9e-10 68.9 108 39.8
PH02Gene49479 Phyllostachys edulis HOM05M000141 ORTHO05M000085 1.2e-09 66.2 131 38.9
Pahal.8G109500 Panicum hallii HOM05M000141 ORTHO05M000085 2.8e-09 65.1 118 50.8
Sobic.005G102401 Sorghum bicolor HOM05M000141 ORTHO05M000085 1.8e-08 62.4 68 73.5
Aco007952 Ananas comosus HOM05M000141 ORTHO05M000085 6.8e-08 60.5 108 37.0
p5.00_sc00034_p0024 Elaeis guineensis HOM05M000141 ORTHO05M000085 8.9e-08 60.1 75 42.7
Misin09G134200 Miscanthus sinensis HOM05M000141 ORTHO05M000085 8.9e-08 60.1 104 39.4
V3.Lp_chr1_0G13276 Lolium perenne HOM05M000141 ORTHO05M000085 2.0e-07 58.9 111 36.0
TraesCSU03G0011400 Triticum aestivum HOM05M000141 ORTHO05M000085 2.0e-07 58.9 117 35.9
TRITD2Av1G273910 Triticum turgidum HOM05M000141 ORTHO05M000085 3.4e-07 58.2 117 36.8
TraesCS2A03G1181800 Triticum aestivum HOM05M000141 ORTHO05M000085 4.4e-07 57.8 117 35.9
AET2Gv21116100 Aegilops tauschii HOM05M000141 ORTHO05M000085 5.8e-07 57.4 109 34.9
PH02Gene27724 Phyllostachys edulis HOM05M000141 ORTHO05M000085 5.8e-07 57.4 91 36.3
p5.00_sc00045_p0069 Elaeis guineensis HOM05M000141 ORTHO05M000085 7.5e-07 57.0 75 42.7
CALSI_Maker00022318 Calamus simplicifolius HOM05M000141 ORTHO05M000085 1.3e-06 56.2 73 42.5
Dexi2B01G0000460 Digitaria exilis HOM05M000141 ORTHO05M000085 2.2e-06 55.5 75 37.3
Dexi2A01G0000450 Digitaria exilis HOM05M000141 ORTHO05M000085 2.9e-06 55.1 75 37.3
Misin04G009000 Miscanthus sinensis HOM05M000141 ORTHO05M000085 2.9e-06 55.1 101 33.7
GWHGASIY038067 Secale cereale HOM05M000141 ORTHO05M000085 2.9e-06 55.1 109 33.9
Pahal.2G004900 Panicum hallii HOM05M000141 ORTHO05M000085 4.9e-06 54.3 75 38.7
GWHGAORA008493 Cenchrus purpureus HOM05M000141 ORTHO05M000085 6.4e-06 53.9 111 32.4
GWHGAORA010462 Cenchrus purpureus HOM05M000141 ORTHO05M000085 6.4e-06 53.9 75 38.7
EJB05_40723 Eragrostis curvula HOM05M000141 ORTHO05M000085 6.4e-06 53.9 75 38.7
GWHGAORA010332 Cenchrus purpureus HOM05M000141 ORTHO05M000085 8.3e-06 53.5 77 40.3


User provided reference genes

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