Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0198200 Oryza sativa ssp. japonica HOM05M007926 ORTHO05M009976 1.9e-174 615.1 357 100.0
GWHGAZTO010840 Oryza alta HOM05M007926 ORTHO05M009976 1.8e-151 538.9 371 87.3
GWHGAZTO062953 Oryza alta HOM05M007926 ORTHO05M009976 2.3e-151 538.5 371 88.1
OsKitaake11g063700 Oryza sativa Kitaake HOM05M007926 ORTHO05M009976 7.9e-136 486.9 313 92.0
OsR498G1119563400.01 Oryza sativa ssp. indica HOM05M007926 ORTHO05M009976 7.0e-116 420.6 272 92.6
PH02Gene20722 Phyllostachys edulis HOM05M007926 ORTHO05M009976 4.8e-109 397.9 370 65.7
PH02Gene18837 Phyllostachys edulis HOM05M007926 ORTHO05M009976 8.8e-103 377.1 368 64.1
Seita.8G067500 Setaria italica HOM05M007926 ORTHO05M009976 1.6e-91 339.7 380 54.5
Sevir.8G068700 Setaria viridis HOM05M007926 ORTHO05M009976 1.6e-91 339.7 380 54.5
Pahal.8G059100 Panicum hallii HOM05M007926 ORTHO05M009976 3.5e-91 338.6 373 56.8
Dexi8A01G0006330 Digitaria exilis HOM05M007926 ORTHO05M009976 7.8e-91 337.4 372 59.4
TRITD4Bv1G037460 Triticum turgidum HOM05M007926 ORTHO05M009976 2.5e-89 332.4 376 58.2
Sobic.005G074200 Sorghum bicolor HOM05M007926 ORTHO05M009976 4.3e-89 331.6 368 54.9
Zm00001eb168890 Zea mays B73 HOM05M007926 ORTHO05M009976 4.3e-89 331.6 374 54.0
GWHGASIY019090 Secale cereale HOM05M007926 ORTHO05M009976 5.6e-89 331.3 379 56.5
Dexi8B01G0005510 Digitaria exilis HOM05M007926 ORTHO05M009976 7.3e-89 330.9 372 53.5
TraesCS4B03G0231500 Triticum aestivum HOM05M007926 ORTHO05M009976 1.6e-88 329.7 376 57.4
Zm00007a00033852 Zea mays B104 HOM05M007926 ORTHO05M009976 8.0e-88 327.4 374 54.3
TraesCS4A03G0570200 Triticum aestivum HOM05M007926 ORTHO05M009976 1.0e-87 327.0 376 57.4
TRITD4Av1G169470 Triticum turgidum HOM05M007926 ORTHO05M009976 1.0e-87 327.0 376 57.4
GWHGAORA042593 Cenchrus purpureus HOM05M007926 ORTHO05M009976 3.1e-87 325.5 386 53.4
GWHGAORA064102 Cenchrus purpureus HOM05M007926 ORTHO05M009976 5.2e-87 324.7 385 54.0
Horvu_MOREX_4H01G115800 Hordeum vulgare HOM05M007926 ORTHO05M009976 8.9e-87 323.9 369 58.3
AET4Gv20211800 Aegilops tauschii HOM05M007926 ORTHO05M009976 2.0e-86 322.8 373 56.8
TraesCS4D03G0193900 Triticum aestivum HOM05M007926 ORTHO05M009976 2.0e-86 322.8 373 56.6
Misin09G063800 Miscanthus sinensis HOM05M007926 ORTHO05M009976 1.3e-85 320.1 369 54.7
TRIDC4BG015760 Triticum dicoccoides HOM05M007926 ORTHO05M009976 4.9e-85 318.2 367 57.2
Sspon.05G0017550-2B Saccharum spontaneum HOM05M007926 ORTHO05M009976 2.4e-84 315.8 377 52.8
Misin10G058300 Miscanthus sinensis HOM05M007926 ORTHO05M009976 9.2e-84 313.9 367 55.0
Sspon.05G0017550-1A Saccharum spontaneum HOM05M007926 ORTHO05M009976 2.0e-83 312.8 377 52.5
TRIDC4AG034080 Triticum dicoccoides HOM05M007926 ORTHO05M009976 3.5e-83 312.0 367 56.4
V3.Lp_chr4_0G11334 Lolium perenne HOM05M007926 ORTHO05M009976 4.6e-83 311.6 379 54.1
Zjn_sc00031.1.g03160.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M007926 ORTHO05M009976 2.5e-81 305.8 355 53.8
evm.TU.AsparagusV1_02.649.V1.1 Asparagus officinalis HOM05M007926 ORTHO05M009976 1.4e-36 157.1 354 35.0
Asa8G04548 Allium sativum HOM05M007926 ORTHO05M009976 9.3e-36 154.5 356 33.4
DDU739G0075 Dioscorea dumetorum HOM05M000909 ORTHO05M002494 3.1e-31 139.4 359 29.0
Asa8G04551 Allium sativum HOM05M007926 ORTHO05M009976 1.0e-29 134.4 362 29.6
p5.00_sc00045_p0100 Elaeis guineensis HOM05M007926 ORTHO05M009976 1.4e-28 130.6 270 36.3
HPP92_011411 Vanilla planifolia HOM05M007926 ORTHO05M009976 3.9e-26 122.5 358 28.2
Asa8G04550 Allium sativum HOM05M007926 ORTHO05M009976 1.1e-25 120.9 337 30.0
HPP92_016119 Vanilla planifolia HOM05M007926 ORTHO05M009976 1.1e-23 114.4 340 28.2
Zjn_sc00140.1.g00490.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M007926 ORTHO05M009976 1.8e-23 113.6 113 55.8
Zjn_sc05304.1.g00010.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M007926 ORTHO05M009976 6.9e-23 111.7 113 55.8
CALSI_Maker00039534 Calamus simplicifolius HOM05M007926 ORTHO05M009976 1.7e-21 107.1 265 35.1
HPP92_004458 Vanilla planifolia HOM05M007926 ORTHO05M009976 2.5e-20 103.2 349 27.5
Ma10_g11050 Musa acuminata HOM05M007926 ORTHO05M009976 7.9e-19 98.2 251 32.7
Bradi4g23172 Brachypodium distachyon HOM05M007926 ORTHO05M009976 1.3e-13 80.9 119 43.7
Potri.013G113800 Populus trichocarpa HOM05M007926 ORTHO05M009976 3.8e-13 79.3 338 23.4
Potri.019G084400 Populus trichocarpa HOM05M007926 ORTHO05M009976 8.5e-13 78.2 331 24.8
ATR0152G020 Amborella trichopoda HOM05M007926 ORTHO05M009976 4.2e-12 75.9 307 27.4
Solyc11g017410.1 Solanum lycopersicum HOM05M007926 ORTHO05M009976 1.1e-07 61.2 361 19.9
Asa0G04907 Allium sativum HOM05M007926 ORTHO05M009976 5.9e-06 55.5 74 40.5


User provided reference genes

Program Settings