Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g028900 Oryza sativa Kitaake HOM05M007460 ORTHO05M009314 1.0e-140 502.7 257 100.0
Os11g0145100 Oryza sativa ssp. japonica HOM05M007460 ORTHO05M009314 1.0e-140 502.7 257 100.0
OsR498G1119406200.01 Oryza sativa ssp. indica HOM05M007460 ORTHO05M009314 2.9e-140 501.1 257 99.6
GWHGAZTO010415 Oryza alta HOM05M007460 ORTHO05M009314 1.5e-131 472.2 257 93.4
OsKitaake12g034000 Oryza sativa Kitaake HOM05M007460 ORTHO05M009314 2.5e-131 471.5 253 95.3
OsR498G1220919200.01 Oryza sativa ssp. indica HOM05M007460 ORTHO05M009314 2.5e-131 471.5 253 95.3
Os12g0142600 Oryza sativa ssp. japonica HOM05M007460 ORTHO05M009314 2.5e-131 471.5 253 95.3
OB11G12240 Oryza brachyantha HOM05M007460 ORTHO05M009314 4.5e-117 424.1 256 85.5
TraesCS5A03G0374400 Triticum aestivum HOM05M007460 ORTHO05M009314 6.4e-111 403.7 258 82.2
GWHGASIY025361 Secale cereale HOM05M007460 ORTHO05M009314 8.3e-111 403.3 258 81.8
TraesCS5B03G0365400 Triticum aestivum HOM05M007460 ORTHO05M009314 1.3e-108 396.0 257 80.5
TRITD5Bv1G083160 Triticum turgidum HOM05M007460 ORTHO05M009314 1.3e-108 396.0 257 80.5
TraesCS5D03G0352700 Triticum aestivum HOM05M007460 ORTHO05M009314 5.0e-108 394.0 258 79.5
V3.Lp_chr5_0G17298 Lolium perenne HOM05M007460 ORTHO05M009314 4.3e-107 391.0 263 79.5
Bradi4g43030 Brachypodium distachyon HOM05M007460 ORTHO05M009314 5.6e-107 390.6 248 81.9
Dexi3B01G0002620 Digitaria exilis HOM05M007460 ORTHO05M009314 1.2e-106 389.4 252 79.4
Sevir.7G328700 Setaria viridis HOM05M007460 ORTHO05M009314 1.0e-105 386.3 253 77.5
Pahal.3G023300 Panicum hallii HOM05M007460 ORTHO05M009314 1.4e-105 386.0 260 77.3
Seita.7G318800 Setaria italica HOM05M007460 ORTHO05M009314 3.1e-105 384.8 253 77.1
TRITD5Av1G101380 Triticum turgidum HOM05M007460 ORTHO05M009314 1.1e-102 376.3 258 77.9
Misin15G026600 Miscanthus sinensis HOM05M007460 ORTHO05M009314 2.4e-102 375.2 261 75.5
Zjn_sc00097.1.g01770.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M007460 ORTHO05M009314 3.5e-101 371.3 251 78.1
Zm00001eb163370 Zea mays B73 HOM05M007460 ORTHO05M009314 8.6e-100 366.7 258 73.6
Zm00007a00025163 Zea mays B104 HOM05M007460 ORTHO05M009314 8.6e-100 366.7 258 73.6
Sobic.008G011800 Sorghum bicolor HOM05M007460 ORTHO05M009314 1.5e-99 365.9 259 75.7
Sspon.07G0017050-4D Saccharum spontaneum HOM05M007460 ORTHO05M009314 3.3e-99 364.8 260 73.8
TRIDC5BG023460 Triticum dicoccoides HOM05M007460 ORTHO05M009314 2.8e-98 361.7 222 83.8
PH02Gene37983 Phyllostachys edulis HOM05M007460 ORTHO05M009314 5.2e-97 357.5 222 82.4
Horvu_MOREX_5H01G232200 Hordeum vulgare HOM05M007460 ORTHO05M009314 9.2e-94 346.7 217 82.0
Sspon.07G0017050-2B Saccharum spontaneum HOM05M007460 ORTHO05M009314 8.1e-90 333.6 236 74.2
Sspon.07G0017050-1A Saccharum spontaneum HOM05M007460 ORTHO05M009314 8.9e-89 330.1 226 77.4
TRIDC5AG022430 Triticum dicoccoides HOM05M007460 ORTHO05M009314 2.8e-74 282.0 157 90.4
Aco007264 Ananas comosus HOM05M007460 ORTHO05M009314 9.6e-67 256.9 259 54.8
p5.00_sc00009_p0229 Elaeis guineensis HOM05M007460 ORTHO05M009314 4.8e-66 254.6 247 57.5
DDU272G0094 Dioscorea dumetorum HOM05M007460 ORTHO05M009314 1.5e-64 249.6 225 60.0
DDU336G0006 Dioscorea dumetorum HOM05M007460 ORTHO05M009314 1.5e-64 249.6 225 60.0
HPP92_016047 Vanilla planifolia HOM05M007460 ORTHO05M009314 4.8e-58 228.0 240 53.3
AET5Gv20356500 Aegilops tauschii HOM05M007460 ORTHO05M009314 2.0e-56 222.6 127 88.2
Ma04_g00360 Musa acuminata HOM05M007460 ORTHO05M009314 6.9e-49 197.6 208 56.7
Zosma213g00080 Zostera marina HOM05M007460 ORTHO05M009314 2.1e-45 186.0 243 44.9
SEGI_31103 Sequoiadendron giganteum HOM05M007460 ORTHO05M009314 3.1e-41 172.2 258 43.0
CALSI_Maker00003892 Calamus simplicifolius HOM05M007460 ORTHO05M009314 1.5e-40 169.9 180 55.0
Solyc02g087600.3 Solanum lycopersicum HOM05M007460 ORTHO05M009314 3.8e-39 165.2 246 42.7
Glyma.03G136600 Glycine max HOM05M007460 ORTHO05M009314 1.4e-38 163.3 239 45.2
Asa5G05805 Allium sativum HOM05M007460 ORTHO05M009314 2.1e-37 159.5 245 42.9
MBI17_g14625_MAGBIO Magnolia biondii HOM05M007460 ORTHO05M009314 2.7e-37 159.1 250 42.8
Mapoly0023s0152 Marchantia polymorpha HOM05M007460 ORTHO05M009314 2.0e-35 152.9 294 37.1
GWHGAORA040457 Cenchrus purpureus HOM05M007460 ORTHO05M009314 7.4e-35 151.0 112 70.5
AT2G41750 Arabidopsis thaliana HOM05M007460 ORTHO05M009314 6.3e-34 147.9 253 39.5
ATR0626G250 Amborella trichopoda HOM05M007460 ORTHO05M009314 8.2e-34 147.5 343 33.5
Pp3c17_17160 Physcomitrium patens HOM05M007460 ORTHO05M009314 2.0e-32 142.9 293 34.8
SMO240G0020 Selaginella moellendorffii HOM05M007460 ORTHO05M009314 9.4e-30 134.0 192 45.8
Potri.006G051600 Populus trichocarpa HOM05M007460 ORTHO05M009314 3.6e-29 132.1 256 37.5
MBI17_g36895_MAGBIO Magnolia biondii HOM05M007460 ORTHO05M009314 3.9e-28 128.6 216 43.5
evm.TU.AsparagusV1_03.70.V1.1 Asparagus officinalis HOM05M007460 ORTHO05M009314 9.7e-19 97.4 109 56.9
evm.TU.AsparagusV1_09.1306.V1.1 Asparagus officinalis HOM05M002154 ORTHO05M009314 2.2e-18 96.3 104 57.7
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05M007460 ORTHO05M009314 1.7e-15 86.7 192 38.0
Glyma.19G139000 Glycine max HOM05M007460 ORTHO05M009314 5.5e-14 81.6 97 50.5
MCO07G627 Micromonas commoda HOM05M007460 ORTHO05M009314 5.2e-12 75.1 268 30.2
GWHGAZTO019878 Oryza alta HOM05M007460 ORTHO05M009314 6.8e-12 74.7 87 51.7
Dexi3A01G0002530 Digitaria exilis HOM05M007460 ORTHO05M009314 2.2e-10 69.7 249 26.9
SMO339G0013 Selaginella moellendorffii HOM05M005967 ORTHO05M007052 1.1e-06 57.4 160 30.0
Mapoly0032s0131 Marchantia polymorpha HOM05M005967 ORTHO05M007052 7.2e-06 54.7 142 31.7


User provided reference genes

Program Settings