Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g024100 Oryza sativa Kitaake HOM05M003634 ORTHO05M004265 5.6e-89 330.1 160 100.0
OsR498G1119391800.01 Oryza sativa ssp. indica HOM05M003634 ORTHO05M004265 5.6e-89 330.1 160 100.0
OsR498G1220899400.01 Oryza sativa ssp. indica HOM05M003634 ORTHO05M004265 5.6e-89 330.1 160 100.0
Os11g0139100 Oryza sativa ssp. japonica HOM05M003634 ORTHO05M004265 5.6e-89 330.1 160 100.0
GWHGAZTO010354 Oryza alta HOM05M003634 ORTHO05M004265 7.3e-89 329.7 160 99.4
OsKitaake12g027800 Oryza sativa Kitaake HOM05M003634 ORTHO05M004265 6.1e-88 326.6 160 99.4
Os12g0135900 Oryza sativa ssp. japonica HOM05M003634 ORTHO05M004265 6.1e-88 326.6 160 99.4
GWHGAZTO013603 Oryza alta HOM05M003634 ORTHO05M004265 2.3e-87 324.7 160 98.8
GWHGAZTO062565 Oryza alta HOM05M003634 ORTHO05M004265 5.2e-87 323.6 160 98.8
EJB05_02159 Eragrostis curvula HOM05M003634 ORTHO05M004265 2.0e-86 321.6 160 96.2
EJB05_02180 Eragrostis curvula HOM05M003634 ORTHO05M004265 2.0e-86 321.6 160 96.2
EJB05_29647 Eragrostis curvula HOM05M003634 ORTHO05M004265 2.0e-86 321.6 160 96.2
EJB05_58041 Eragrostis curvula HOM05M003634 ORTHO05M004265 2.0e-86 321.6 160 96.2
Ot_Chr2_g11004 Oropetium thomaeum HOM05M003634 ORTHO05M004265 2.6e-86 321.2 160 96.9
GWHGAZTO065542 Oryza alta HOM05M003634 ORTHO05M004265 2.6e-86 321.2 160 98.1
Pahal.8G023000 Panicum hallii HOM05M003634 ORTHO05M004265 2.6e-86 321.2 160 96.9
OB0044G10090 Oryza brachyantha HOM05M003634 ORTHO05M004265 3.4e-86 320.9 160 97.5
Sspon.07G0017240-4D Saccharum spontaneum HOM05M003634 ORTHO05M004265 3.4e-86 320.9 160 96.9
Zjn_sc00028.1.g02990.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003634 ORTHO05M004265 3.4e-86 320.9 160 96.2
Sobic.005G027300 Sorghum bicolor HOM05M003634 ORTHO05M004265 5.7e-86 320.1 160 96.2
Misin09G015000 Miscanthus sinensis HOM05M003634 ORTHO05M004265 7.5e-86 319.7 160 96.9
Seita.8G024900 Setaria italica HOM05M003634 ORTHO05M004265 7.5e-86 319.7 160 95.6
Sevir.8G025700 Setaria viridis HOM05M003634 ORTHO05M004265 7.5e-86 319.7 160 95.6
Pahal.3G020700 Panicum hallii HOM05M003634 ORTHO05M004265 9.8e-86 319.3 160 96.2
Seita.7G315600 Setaria italica HOM05M003634 ORTHO05M004265 9.8e-86 319.3 160 95.6
Sevir.7G325300 Setaria viridis HOM05M003634 ORTHO05M004265 9.8e-86 319.3 160 95.6
GWHGAORA010651 Cenchrus purpureus HOM05M003634 ORTHO05M004265 1.3e-85 318.9 160 95.6
Sspon.05G0020090-1P Saccharum spontaneum HOM05M003634 ORTHO05M004265 1.3e-85 318.9 160 96.9
Sspon.07G0017240-3C Saccharum spontaneum HOM05M003634 ORTHO05M004265 1.7e-85 318.5 160 96.2
GWHGAORA005552 Cenchrus purpureus HOM05M003634 ORTHO05M004265 2.2e-85 318.2 160 95.6
Misin07G423100 Miscanthus sinensis HOM05M003634 ORTHO05M004265 2.9e-85 317.8 160 95.6
Bradi4g26480 Brachypodium distachyon HOM05M003634 ORTHO05M004265 4.9e-85 317.0 160 95.0
PH02Gene09877 Phyllostachys edulis HOM05M003634 ORTHO05M004265 8.3e-85 316.2 160 96.9
Sspon.07G0017240-2B Saccharum spontaneum HOM05M003634 ORTHO05M004265 8.3e-85 316.2 158 95.6
Sspon.07G0017240-1A Saccharum spontaneum HOM05M003634 ORTHO05M004265 1.8e-84 315.1 158 95.6
Misin15G008400 Miscanthus sinensis HOM05M003634 ORTHO05M004265 2.4e-84 314.7 160 95.6
GWHGAORA040526 Cenchrus purpureus HOM05M003634 ORTHO05M004265 4.1e-84 313.9 160 94.4
Sspon.05G0020090-1A Saccharum spontaneum HOM05M003634 ORTHO05M004265 1.2e-83 312.4 155 97.4
Zm00001eb196350 Zea mays B73 HOM05M003634 ORTHO05M004265 1.2e-83 312.4 160 93.8
Sobic.008G017700 Sorghum bicolor HOM05M003634 ORTHO05M004265 3.5e-83 310.8 160 94.4
Sspon.05G0020090-2B Saccharum spontaneum HOM05M003634 ORTHO05M004265 5.9e-83 310.1 154 97.4
Sspon.05G0020090-3C Saccharum spontaneum HOM05M003634 ORTHO05M004265 5.9e-83 310.1 154 97.4
TraesCS4A03G0503200 Triticum aestivum HOM05M003634 ORTHO05M004265 1.0e-82 309.3 160 93.8
TRIDC4AG029800 Triticum dicoccoides HOM05M003634 ORTHO05M004265 1.0e-82 309.3 160 93.8
GWHGASIY019439 Secale cereale HOM05M003634 ORTHO05M004265 2.3e-82 308.1 160 94.4
AET4Gv20272500 Aegilops tauschii HOM05M003634 ORTHO05M004265 3.9e-82 307.4 160 93.8
TraesCS4B03G0310300 Triticum aestivum HOM05M003634 ORTHO05M004265 3.9e-82 307.4 160 93.8
TraesCS4D03G0253900 Triticum aestivum HOM05M003634 ORTHO05M004265 3.9e-82 307.4 160 93.8
TRIDC4BG021360 Triticum dicoccoides HOM05M003634 ORTHO05M004265 3.9e-82 307.4 160 93.8
TRITD4Bv1G057750 Triticum turgidum HOM05M003634 ORTHO05M004265 3.9e-82 307.4 160 93.8
Horvu_MOREX_4H01G172400 Hordeum vulgare HOM05M003634 ORTHO05M004265 6.6e-82 306.6 160 93.1
Aco021186 Ananas comosus HOM05M003634 ORTHO05M004265 6.2e-80 300.1 160 90.0
CALSI_Maker00011176 Calamus simplicifolius HOM05M003634 ORTHO05M004265 1.1e-79 299.3 160 88.1
TRITD4Av1G146150 Triticum turgidum HOM05M003634 ORTHO05M004265 1.8e-79 298.5 159 91.2
GWHGAORA042977 Cenchrus purpureus HOM05M003634 ORTHO05M004265 3.4e-78 294.3 160 89.4
GWHGAORA042961 Cenchrus purpureus HOM05M003634 ORTHO05M004265 5.8e-78 293.5 160 90.0
Ma01_g21530 Musa acuminata HOM05M003634 ORTHO05M004265 5.8e-78 293.5 160 86.9
GWHGAORA040487 Cenchrus purpureus HOM05M003634 ORTHO05M004265 4.9e-77 290.4 160 90.0
p5.00_sc00255_p0004 Elaeis guineensis HOM05M003634 ORTHO05M004265 6.4e-77 290.0 160 86.9
Asa4G00436 Allium sativum HOM05M003634 ORTHO05M004265 2.4e-76 288.1 160 85.6
evm.TU.AsparagusV1_04.257.V1.1 Asparagus officinalis HOM05M003634 ORTHO05M004265 2.0e-75 285.0 160 83.8
DDU613G0619 Dioscorea dumetorum HOM05M003634 ORTHO05M004265 2.0e-75 285.0 160 83.8
OB0044G10160 Oryza brachyantha HOM05M003634 ORTHO05M004265 8.6e-74 279.6 187 78.6
Glyma.17G206800 Glycine max HOM05M003634 ORTHO05M004265 4.3e-73 277.3 160 81.2
OB0044G10240 Oryza brachyantha HOM05M003634 ORTHO05M004265 4.7e-72 273.9 144 93.8
Potri.004G062600 Populus trichocarpa HOM05M003634 ORTHO05M004265 4.7e-72 273.9 160 78.8
AT5G23535 Arabidopsis thaliana HOM05M003634 ORTHO05M004265 1.1e-71 272.7 160 80.6
Glyma.07G180400 Glycine max HOM05M003634 ORTHO05M004265 1.1e-71 272.7 160 80.0
Spipo8G0018900 Spirodela polyrhiza HOM05M003634 ORTHO05M004265 2.3e-71 271.6 160 78.8
CDE04G1639 Ceratophyllum demersum HOM05M003634 ORTHO05M004265 4.0e-71 270.8 160 80.6
Zosma02g15000 Zostera marina HOM05M003634 ORTHO05M004265 8.9e-71 269.6 160 79.4
Solyc08g075850.3 Solanum lycopersicum HOM05M003634 ORTHO05M004265 8.3e-69 263.1 160 75.6
ATR0787G203 Amborella trichopoda HOM05M003634 ORTHO05M004265 1.4e-68 262.3 160 77.5
GWHGASIY021622 Secale cereale HOM05M003634 ORTHO05M004265 9.2e-68 259.6 160 82.5
Dexi8A01G0002270 Digitaria exilis HOM05M003634 ORTHO05M004265 1.2e-67 259.2 160 81.2
SEGI_08900 Sequoiadendron giganteum HOM05M003634 ORTHO05M004265 1.0e-66 256.1 160 75.6
Glyma.02G145800 Glycine max HOM05M003634 ORTHO05M004265 4.3e-65 250.8 160 75.0
p5.00_sc01019_p0004 Elaeis guineensis HOM05M003634 ORTHO05M004265 3.6e-64 247.7 131 89.3
HPP92_004579 Vanilla planifolia HOM05M003634 ORTHO05M004265 2.0e-62 241.9 131 87.8
OB12G12430 Oryza brachyantha HOM05M003634 ORTHO05M004265 2.8e-56 221.5 108 98.1
Pp3c2_11670 Physcomitrium patens HOM05M003634 ORTHO05M004265 2.4e-52 208.4 160 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3924 Anthoceros agrestis HOM05M003634 ORTHO05M004265 7.3e-49 196.8 132 68.2
Mapoly0064s0052 Marchantia polymorpha HOM05M003634 ORTHO05M004265 4.8e-48 194.1 155 56.8
Zosma05g02170 Zostera marina HOM05M024665 ORTHO05M004265 7.1e-44 180.3 111 75.7
PH02Gene27805 Phyllostachys edulis HOM05M003634 ORTHO05M004265 3.9e-42 174.5 87 97.7
Dexi3B01G0002210 Digitaria exilis HOM05M003634 ORTHO05M004265 5.1e-42 174.1 87 95.4
Dexi8B01G0002080 Digitaria exilis HOM05M003634 ORTHO05M004265 5.1e-42 174.1 87 95.4
GWHGAORA010867 Cenchrus purpureus HOM05M003634 ORTHO05M004265 1.5e-38 162.5 121 73.6
Zm00007a00052252 Zea mays B104 HOM05M003634 ORTHO05M004265 1.5e-38 162.5 80 95.0
MCO13G165 Micromonas commoda HOM05M003634 ORTHO05M004265 2.6e-38 161.8 145 49.0
Zjn_sc00031.1.g00940.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003634 ORTHO05M004265 1.3e-34 149.4 160 54.4
Asa4G04325 Allium sativum HOM05M003634 ORTHO05M004265 2.3e-34 148.7 93 76.3
EJB05_55169 Eragrostis curvula HOM05M003634 ORTHO05M004265 5.1e-34 147.5 73 93.2
CBR_g54238 Chara braunii HOM05M003634 ORTHO05M004265 1.8e-31 139.0 155 48.4
SMO347G0488 Selaginella moellendorffii HOM05M003634 ORTHO05M004265 1.8e-31 139.0 157 46.5
Misin10G013600 Miscanthus sinensis HOM05M003634 ORTHO05M004265 6.9e-23 110.5 59 91.5
Misin09G015400 Miscanthus sinensis HOM05M003634 ORTHO05M004265 4.5e-22 107.8 53 98.1
Zm00007a00045730 Zea mays B104 HOM05M003634 ORTHO05M004265 5.9e-22 107.5 52 98.1
Dexi3A01G0002190 Digitaria exilis HOM05M003634 ORTHO05M004265 3.8e-21 104.8 53 94.3
Cre07.g330450 Chlamydomonas reinhardtii HOM05M003634 ORTHO05M004265 5.0e-21 104.4 145 42.8
CALSI_Maker00018372 Calamus simplicifolius HOM05M003634 ORTHO05M004265 2.7e-19 98.6 52 88.5
SMO356G0620 Selaginella moellendorffii HOM05M005633 ORTHO05M006970 1.8e-15 85.9 124 40.3
PRCOL_00005792 Prasinoderma coloniale HOM05M003634 ORTHO05M004265 1.2e-14 83.2 140 35.0
p5.00_sc00009_p0161 Elaeis guineensis HOM05M005633 ORTHO05M006970 2.6e-14 82.0 117 41.0
CALSI_Maker00035712 Calamus simplicifolius HOM05M005633 ORTHO05M006970 4.5e-14 81.3 115 40.9
Ma08_g33500 Musa acuminata HOM05M005633 ORTHO05M006970 7.7e-14 80.5 117 39.3
Cre16.g652550 Chlamydomonas reinhardtii HOM05M005633 ORTHO05M006970 1.0e-13 80.1 92 43.5
MBI19_g03677_MAGBIO Magnolia biondii HOM05M005633 ORTHO05M006970 1.0e-13 80.1 108 39.8
ATR1088G047 Amborella trichopoda HOM05M005633 ORTHO05M006970 1.7e-13 79.3 113 41.6
HPP92_013305 Vanilla planifolia HOM05M005633 ORTHO05M006970 1.7e-13 79.3 117 41.0
Zosma03g31650 Zostera marina HOM05M005633 ORTHO05M006970 1.7e-13 79.3 111 37.8
PH02Gene09015 Phyllostachys edulis HOM05M005633 ORTHO05M006970 2.2e-13 79.0 88 43.2
Zjn_sc00068.1.g01310.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005633 ORTHO05M006970 2.2e-13 79.0 88 43.2
Aco007410 Ananas comosus HOM05M005633 ORTHO05M006970 2.9e-13 78.6 117 40.2
Ot_Chr2_g15560 Oropetium thomaeum HOM05M005633 ORTHO05M006970 2.9e-13 78.6 88 42.0
GWHGAZTO073686 Oryza alta HOM05M005633 ORTHO05M006970 2.9e-13 78.6 88 42.0
GWHGAZTO088918 Oryza alta HOM05M005633 ORTHO05M006970 2.9e-13 78.6 88 42.0
OsKitaake06g257203 Oryza sativa Kitaake HOM05M005633 ORTHO05M006970 2.9e-13 78.6 88 42.0
OsR498G0613200400.01 Oryza sativa ssp. indica HOM05M005633 ORTHO05M006970 2.9e-13 78.6 88 42.0
Os06g0683200 Oryza sativa ssp. japonica HOM05M005633 ORTHO05M006970 2.9e-13 78.6 88 42.0
Pp3c15_17530 Physcomitrium patens HOM05M005633 ORTHO05M006970 2.9e-13 78.6 119 37.8
Seita.4G255700 Setaria italica HOM05M005633 ORTHO05M006970 2.9e-13 78.6 88 42.0
Sevir.4G271300 Setaria viridis HOM05M005633 ORTHO05M006970 2.9e-13 78.6 88 42.0
Spipo7G0010600 Spirodela polyrhiza HOM05M005633 ORTHO05M006970 3.8e-13 78.2 117 39.3
Ma06_g26930 Musa acuminata HOM05M003634 ORTHO05M004265 5.0e-13 77.8 80 55.0
Dexi4A01G0021240 Digitaria exilis HOM05M005633 ORTHO05M006970 6.5e-13 77.4 88 40.9
Dexi4B01G0020620 Digitaria exilis HOM05M005633 ORTHO05M006970 6.5e-13 77.4 88 40.9
EJB05_41987 Eragrostis curvula HOM05M005633 ORTHO05M006970 6.5e-13 77.4 88 40.9
Misin18G234200 Miscanthus sinensis HOM05M005633 ORTHO05M006970 6.5e-13 77.4 88 40.9
PH02Gene44961 Phyllostachys edulis HOM05M005633 ORTHO05M006970 6.5e-13 77.4 88 42.0
Sobic.010G233800 Sorghum bicolor HOM05M005633 ORTHO05M006970 6.5e-13 77.4 88 40.9
Zjn_sc00008.1.g02270.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005633 ORTHO05M006970 6.5e-13 77.4 88 40.9
GWHGAORA029075 Cenchrus purpureus HOM05M005633 ORTHO05M006970 8.5e-13 77.0 88 40.9
GWHGAORA057391 Cenchrus purpureus HOM05M005633 ORTHO05M006970 8.5e-13 77.0 88 40.9
Zm00001eb225380 Zea mays B73 HOM05M005633 ORTHO05M006970 8.5e-13 77.0 88 40.9
Mapoly0006s0262 Marchantia polymorpha HOM05M005633 ORTHO05M006970 1.1e-12 76.6 111 39.6
Pp3c9_9200 Physcomitrium patens HOM05M005633 ORTHO05M006970 1.1e-12 76.6 113 36.3
Potri.001G415400 Populus trichocarpa HOM05M005633 ORTHO05M006970 1.1e-12 76.6 89 41.6
evm.TU.AsparagusV1_07.3907.V1.1 Asparagus officinalis HOM05M005633 ORTHO05M006970 1.4e-12 76.3 122 37.7
AT5G54600 Arabidopsis thaliana HOM05M005633 ORTHO05M006970 1.9e-12 75.9 115 34.8
Pahal.4G040400 Panicum hallii HOM05M005633 ORTHO05M006970 1.9e-12 75.9 88 40.9
AET7Gv21086700 Aegilops tauschii HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
Horvu_MOREX_7H01G615300 Hordeum vulgare HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
GWHGASIY037507 Secale cereale HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
GWHGASIY041118 Secale cereale HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
TraesCS7A03G1091400 Triticum aestivum HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
TraesCS7B03G0939600 Triticum aestivum HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
TraesCS7D03G1043200 Triticum aestivum HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
TRIDC7AG062450 Triticum dicoccoides HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
TRIDC7BG055990 Triticum dicoccoides HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
TRITD7Av1G240340 Triticum turgidum HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
TRITD7Bv1G189700 Triticum turgidum HOM05M005633 ORTHO05M006970 2.5e-12 75.5 90 40.0
Horvu_MOREX_2H01G145700 Hordeum vulgare HOM05M005633 ORTHO05M006970 3.2e-12 75.1 90 40.0
CDE05G2809 Ceratophyllum demersum HOM05M005633 ORTHO05M006970 4.2e-12 74.7 113 37.2
DDU866G0030 Dioscorea dumetorum HOM05M005633 ORTHO05M006970 4.2e-12 74.7 120 34.2
Bradi1g33030 Brachypodium distachyon HOM05M005633 ORTHO05M006970 5.5e-12 74.3 90 38.9
V3.Lp_chr7_0.1G11100 Lolium perenne HOM05M005633 ORTHO05M006970 5.5e-12 74.3 103 36.9
Misin19G268100 Miscanthus sinensis HOM05M005633 ORTHO05M006970 5.5e-12 74.3 88 39.8
CBR_g8903 Chara braunii HOM05M005633 ORTHO05M006970 7.2e-12 73.9 89 39.3
Asa7G03813 Allium sativum HOM05M005633 ORTHO05M006970 2.7e-11 72.0 113 36.3
Asa7G03822 Allium sativum HOM05M005633 ORTHO05M006970 2.7e-11 72.0 113 36.3
Glyma.12G215900 Glycine max HOM05M005633 ORTHO05M006970 3.6e-11 71.6 111 34.2
Glyma.13G285600 Glycine max HOM05M005633 ORTHO05M006970 3.6e-11 71.6 111 34.2
Solyc07g063960.3 Solanum lycopersicum HOM05M005633 ORTHO05M006970 4.7e-11 71.2 113 34.5
Sspon.08G0003500-1A Saccharum spontaneum HOM05M005633 ORTHO05M006970 6.1e-11 70.9 83 39.8
Sspon.08G0003500-2B Saccharum spontaneum HOM05M005633 ORTHO05M006970 6.1e-11 70.9 83 39.8
Sspon.08G0003500-3C Saccharum spontaneum HOM05M005633 ORTHO05M006970 6.1e-11 70.9 83 39.8
evm.TU.AsparagusV1_03.957.V1.1 Asparagus officinalis HOM05M005633 ORTHO05M006970 3.0e-10 68.6 122 34.4
DexiUA01G0020370 Digitaria exilis HOM05M001586 ORTHO05M001487 4.4e-09 64.7 78 47.4
Ot_Chr2_gn33432 Oropetium thomaeum HOM05M003634 ORTHO05M004265 6.3e-08 60.8 32 93.8
Ot_Chr2_gn33434 Oropetium thomaeum HOM05M003634 ORTHO05M004265 6.3e-08 60.8 32 93.8
Ot_Un131_gn40083 Oropetium thomaeum HOM05M003634 ORTHO05M004265 6.3e-08 60.8 32 93.8
PRCOL_00001762 Prasinoderma coloniale HOM05M005633 ORTHO05M006970 4.1e-07 58.2 94 34.0


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