Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g014600 Oryza sativa Kitaake HOM05M002944 ORTHO05M003387 8.4e-174 612.8 313 100.0
Os11g0127700 Oryza sativa ssp. japonica HOM05M002944 ORTHO05M003387 8.4e-174 612.8 313 100.0
OsR498G1119354000.01 Oryza sativa ssp. indica HOM05M002944 ORTHO05M003387 4.2e-173 610.5 313 99.4
GWHGAZTO065458 Oryza alta HOM05M002944 ORTHO05M003387 3.4e-167 590.9 313 95.5
OsKitaake12g017400 Oryza sativa Kitaake HOM05M002944 ORTHO05M003387 2.2e-166 588.2 313 95.2
Os12g0123900 Oryza sativa ssp. japonica HOM05M002944 ORTHO05M003387 2.2e-166 588.2 313 95.2
GWHGAZTO010252 Oryza alta HOM05M002944 ORTHO05M003387 5.5e-165 583.6 313 94.6
GWHGAZTO013478 Oryza alta HOM05M002944 ORTHO05M003387 3.3e-162 574.3 313 93.9
OB12G11520 Oryza brachyantha HOM05M002944 ORTHO05M003387 2.1e-153 545.0 315 89.2
OB11G11240 Oryza brachyantha HOM05M002944 ORTHO05M003387 2.8e-153 544.7 315 89.2
PH02Gene47125 Phyllostachys edulis HOM05M002944 ORTHO05M003387 1.7e-137 492.3 316 81.0
PH02Gene40189 Phyllostachys edulis HOM05M002944 ORTHO05M003387 4.5e-135 484.2 317 80.8
Pahal.3G013100 Panicum hallii HOM05M002944 ORTHO05M003387 1.1e-133 479.6 316 77.5
Pahal.8G014200 Panicum hallii HOM05M002944 ORTHO05M003387 3.6e-132 474.6 316 77.2
EJB05_50707 Eragrostis curvula HOM05M002944 ORTHO05M003387 1.0e-131 473.0 314 77.7
Dexi3A01G0001370 Digitaria exilis HOM05M002944 ORTHO05M003387 2.3e-131 471.9 317 77.6
EJB05_29785 Eragrostis curvula HOM05M002944 ORTHO05M003387 2.3e-131 471.9 314 77.4
PH02Gene19526 Phyllostachys edulis HOM05M002944 ORTHO05M003387 3.0e-131 471.5 340 75.3
GWHGAORA043054 Cenchrus purpureus HOM05M002944 ORTHO05M003387 6.7e-131 470.3 315 76.2
Sevir.8G007300 Setaria viridis HOM05M002944 ORTHO05M003387 1.1e-130 469.5 316 75.9
GWHGAORA010731 Cenchrus purpureus HOM05M002944 ORTHO05M003387 2.0e-130 468.8 315 75.6
Seita.8G007900 Setaria italica HOM05M002944 ORTHO05M003387 4.4e-130 467.6 316 75.9
GWHGAORA040224 Cenchrus purpureus HOM05M002944 ORTHO05M003387 2.2e-129 465.3 313 75.4
Bradi4g43990 Brachypodium distachyon HOM05M002944 ORTHO05M003387 3.7e-129 464.5 312 76.0
GWHGAORA005625 Cenchrus purpureus HOM05M002944 ORTHO05M003387 4.8e-129 464.2 315 75.2
Misin09G002800 Miscanthus sinensis HOM05M002944 ORTHO05M003387 2.4e-128 461.8 319 75.5
Misin10G010100 Miscanthus sinensis HOM05M002944 ORTHO05M003387 3.5e-127 458.0 319 74.3
Sspon.05G0020630-1A Saccharum spontaneum HOM05M002944 ORTHO05M003387 4.5e-127 457.6 319 74.9
Sobic.005G018800 Sorghum bicolor HOM05M002944 ORTHO05M003387 5.9e-127 457.2 319 75.2
EJB05_02047 Eragrostis curvula HOM05M002944 ORTHO05M003387 5.0e-126 454.1 317 76.3
Horvu_MOREX_5H01G248900 Hordeum vulgare HOM05M002944 ORTHO05M003387 3.6e-124 448.0 312 72.4
GWHGASIY025446 Secale cereale HOM05M002944 ORTHO05M003387 4.7e-124 447.6 312 72.4
V3.Lp_chr5_0G8502 Lolium perenne HOM05M002944 ORTHO05M003387 3.0e-123 444.9 309 74.1
Seita.7G306600 Setaria italica HOM05M002944 ORTHO05M003387 3.0e-123 444.9 317 75.1
Sevir.7G317400 Setaria viridis HOM05M002944 ORTHO05M003387 3.0e-123 444.9 317 75.1
TraesCS5A03G0397600 Triticum aestivum HOM05M002944 ORTHO05M003387 2.6e-122 441.8 312 72.4
TRIDC5AG024050 Triticum dicoccoides HOM05M002944 ORTHO05M003387 2.6e-122 441.8 312 72.4
TRITD5Av1G108900 Triticum turgidum HOM05M002944 ORTHO05M003387 2.6e-122 441.8 312 72.4
TraesCS4B03G0305400 Triticum aestivum HOM05M002944 ORTHO05M003387 3.3e-122 441.4 294 75.5
TRIDC4AG030360 Triticum dicoccoides HOM05M002944 ORTHO05M003387 4.4e-122 441.0 316 73.7
TraesCS5B03G0393800 Triticum aestivum HOM05M002944 ORTHO05M003387 1.3e-121 439.5 312 72.1
TRIDC5BG025250 Triticum dicoccoides HOM05M002944 ORTHO05M003387 1.3e-121 439.5 312 72.1
TRITD5Bv1G090790 Triticum turgidum HOM05M002944 ORTHO05M003387 1.3e-121 439.5 312 72.1
TraesCS4A03G0511100 Triticum aestivum HOM05M002944 ORTHO05M003387 6.3e-121 437.2 316 73.4
TRITD4Av1G155740 Triticum turgidum HOM05M002944 ORTHO05M003387 6.3e-121 437.2 316 73.4
GWHGASIY019385 Secale cereale HOM05M002944 ORTHO05M003387 1.1e-120 436.4 317 72.2
Zm00001eb093640 Zea mays B73 HOM05M002944 ORTHO05M003387 1.4e-120 436.0 318 73.0
Ot_Chr2_g22095 Oropetium thomaeum HOM05M002944 ORTHO05M003387 1.8e-120 435.6 316 71.8
AET4Gv20264900 Aegilops tauschii HOM05M002944 ORTHO05M003387 2.4e-120 435.3 316 72.8
Zm00001eb195780 Zea mays B73 HOM05M002944 ORTHO05M003387 2.0e-119 432.2 321 72.0
Dexi3B01G0001490 Digitaria exilis HOM05M002944 ORTHO05M003387 3.5e-119 431.4 317 72.6
TRITD4Bv1G056670 Triticum turgidum HOM05M002944 ORTHO05M003387 4.5e-119 431.0 294 74.5
Zjn_sc00005.1.g04890.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002944 ORTHO05M003387 5.5e-117 424.1 316 71.2
Dexi8B01G0001260 Digitaria exilis HOM05M002944 ORTHO05M003387 2.1e-116 422.2 317 71.6
TraesCS4D03G0245700 Triticum aestivum HOM05M002944 ORTHO05M003387 7.5e-114 413.7 326 68.7
TraesCS5D03G0371200 Triticum aestivum HOM05M002944 ORTHO05M003387 2.8e-113 411.8 312 67.6
Zm00007a00000934 Zea mays B104 HOM05M002944 ORTHO05M003387 9.5e-109 396.7 318 67.9
Zm00007a00044966 Zea mays B104 HOM05M002944 ORTHO05M003387 9.5e-109 396.7 325 65.8
TRIDC4BG020160 Triticum dicoccoides HOM05M002944 ORTHO05M003387 2.6e-106 388.7 262 75.6
Dexi8A01G0001350 Digitaria exilis HOM05M002944 ORTHO05M003387 1.7e-105 386.0 314 67.8
V3.Lp_chr4_0G12866 Lolium perenne HOM05M002944 ORTHO05M003387 2.8e-105 385.2 322 64.6
Misin15G012700 Miscanthus sinensis HOM05M002944 ORTHO05M003387 3.7e-105 384.8 316 67.1
Sspon.05G0020630-3C Saccharum spontaneum HOM05M002944 ORTHO05M003387 1.8e-104 382.5 319 66.5
Sspon.05G0020630-4D Saccharum spontaneum HOM05M002944 ORTHO05M003387 5.4e-104 380.9 319 66.1
PH02Gene18667 Phyllostachys edulis HOM05M002944 ORTHO05M003387 9.5e-93 343.6 232 78.0
Misin15G012600 Miscanthus sinensis HOM05M002944 ORTHO05M003387 1.1e-91 340.1 262 66.4
Aco007159 Ananas comosus HOM05M002944 ORTHO05M003387 9.8e-90 333.6 313 57.5
p5.00_sc00003_p0395 Elaeis guineensis HOM05M002944 ORTHO05M003387 2.7e-87 325.5 315 56.2
p5.00_sc00015_p0102 Elaeis guineensis HOM05M002944 ORTHO05M003387 1.3e-86 323.2 320 56.2
CALSI_Maker00016787 Calamus simplicifolius HOM05M002944 ORTHO05M003387 6.8e-83 310.8 320 55.0
DDU256G0649 Dioscorea dumetorum HOM05M002944 ORTHO05M003387 4.4e-82 308.1 319 52.0
Ma07_g23250 Musa acuminata HOM05M002944 ORTHO05M003387 4.4e-82 308.1 312 53.5
CALSI_Maker00035436 Calamus simplicifolius HOM05M002944 ORTHO05M003387 8.6e-78 293.9 342 50.9
MBI19_g24076_MAGBIO Magnolia biondii HOM05M002944 ORTHO05M003387 1.1e-75 287.0 314 50.0
Ma06_g00920 Musa acuminata HOM05M002944 ORTHO05M003387 1.4e-75 286.6 315 50.2
CDE02G0988 Ceratophyllum demersum HOM05M002944 ORTHO05M003387 6.2e-68 261.2 304 48.0
Potri.001G000900 Populus trichocarpa HOM05M002944 ORTHO05M003387 6.2e-68 261.2 318 46.2
Asa1G01489 Allium sativum HOM05M002944 ORTHO05M003387 2.0e-66 256.1 295 48.8
ATR0068G043 Amborella trichopoda HOM05M002944 ORTHO05M003387 3.4e-66 255.4 314 47.8
CDE11G0372 Ceratophyllum demersum HOM05M002944 ORTHO05M003387 1.3e-65 253.4 306 46.4
Glyma.12G020500 Glycine max HOM05M002944 ORTHO05M003387 1.3e-65 253.4 300 47.7
CALSI_Maker00003096 Calamus simplicifolius HOM05M002944 ORTHO05M003387 4.9e-65 251.5 247 56.3
Spipo29G0009600 Spirodela polyrhiza HOM05M002944 ORTHO05M003387 2.7e-63 245.7 273 50.5
Solyc01g049890.3 Solanum lycopersicum HOM05M002944 ORTHO05M003387 7.8e-63 244.2 318 45.3
Zosma01g28770 Zostera marina HOM05M002944 ORTHO05M003387 7.8e-63 244.2 307 44.6
Sspon.05G0020630-2B Saccharum spontaneum HOM05M002944 ORTHO05M003387 1.3e-60 236.9 319 46.1
AT3G13410 Arabidopsis thaliana HOM05M002944 ORTHO05M003387 2.0e-58 229.6 307 43.0
HPP92_021175 Vanilla planifolia HOM05M002944 ORTHO05M003387 2.2e-57 226.1 320 43.8
Glyma.11G094000 Glycine max HOM05M002944 ORTHO05M003387 2.7e-55 219.2 316 40.8
Zjn_sc00031.1.g00580.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002944 ORTHO05M003387 1.6e-47 193.4 304 42.8
Potri.003G223601 Populus trichocarpa HOM05M002944 ORTHO05M003387 1.3e-44 183.7 257 42.4
AET5Gv20372300 Aegilops tauschii HOM05M002944 ORTHO05M003387 1.1e-40 170.6 106 78.3
DDU059G0005 Dioscorea dumetorum HOM05M002944 ORTHO05M003387 6.9e-35 151.4 220 39.5
DDU200G0008 Dioscorea dumetorum HOM05M002944 ORTHO05M003387 5.9e-34 148.3 212 41.5
SEGI_28087 Sequoiadendron giganteum HOM05M002944 ORTHO05M003387 1.4e-32 143.7 253 33.2
Pahal.J053200 Panicum hallii HOM05M002944 ORTHO05M003387 6.1e-31 138.3 88 76.1
Zm00007a00037333 Zea mays B104 HOM05M002944 ORTHO05M003387 2.3e-30 136.3 278 38.5
evm.TU.AsparagusV1_07.795.V1.1 Asparagus officinalis HOM05M002944 ORTHO05M003387 1.9e-29 133.3 160 50.6
GWHGAZTO062474 Oryza alta HOM05M002944 ORTHO05M003387 2.5e-29 132.9 118 67.8
DDU202G0006 Dioscorea dumetorum HOM05M002944 ORTHO05M003387 7.4e-29 131.3 232 37.1
Pp3c14_9560 Physcomitrium patens HOM05M002944 ORTHO05M003387 1.1e-27 127.5 310 28.4
Zm00007a00006161 Zea mays B104 HOM05M002944 ORTHO05M003387 4.1e-27 125.6 81 74.1
Zm00001eb363780 Zea mays B73 HOM05M002944 ORTHO05M003387 1.2e-26 124.0 76 76.3
Zm00001eb043250 Zea mays B73 HOM05M002944 ORTHO05M003387 1.5e-26 123.6 75 77.3
Zm00001eb387380 Zea mays B73 HOM05M002944 ORTHO05M003387 1.5e-26 123.6 75 77.3
Zm00007a00022323 Zea mays B104 HOM05M002944 ORTHO05M003387 5.9e-26 121.7 74 77.0
Zm00007a00022245 Zea mays B104 HOM05M002944 ORTHO05M003387 1.3e-25 120.6 82 69.5
Zm00001eb132370 Zea mays B73 HOM05M002944 ORTHO05M003387 2.2e-25 119.8 104 61.5
Zm00001eb080660 Zea mays B73 HOM05M002944 ORTHO05M003387 8.5e-25 117.9 75 73.3
Mapoly0001s0434 Marchantia polymorpha HOM05M002944 ORTHO05M003387 2.5e-24 116.3 326 30.1
Pp3c1_26860 Physcomitrium patens HOM05M002944 ORTHO05M003387 4.7e-23 112.1 326 25.8
SMO134G0100 Selaginella moellendorffii HOM05M002944 ORTHO05M003387 1.0e-22 110.9 315 28.9
Zm00007a00032870 Zea mays B104 HOM05M002944 ORTHO05M003387 1.4e-16 90.5 54 74.1
Sspon.07G0028590-1B Saccharum spontaneum HOM05M002944 ORTHO05M003387 3.2e-16 89.4 55 80.0
Potri.008G223987 Populus trichocarpa HOM05M002944 ORTHO05M003387 1.4e-14 84.0 115 42.6
AT1G55546 Arabidopsis thaliana HOM05M002944 ORTHO05M003387 2.2e-12 76.6 105 42.9
Asa6G05187 Allium sativum HOM05M002944 ORTHO05M003387 3.1e-11 72.8 151 34.4
Potri.012G124888 Populus trichocarpa HOM05M002944 ORTHO05M003387 9.1e-11 71.2 88 44.3
Zm00001eb408990 Zea mays B73 HOM05M002944 ORTHO05M003387 1.9e-08 63.5 43 69.8
Zm00007a00030488 Zea mays B104 HOM05M002944 ORTHO05M003387 2.5e-08 63.2 42 71.4
Asa4G06066 Allium sativum HOM05M002944 ORTHO05M003387 7.2e-08 61.6 47 68.1


User provided reference genes

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