Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0112900 Oryza sativa ssp. japonica HOM05M005828 ORTHO05M007421 1.6e-62 241.9 128 100.0
OsR498G1119312700.01 Oryza sativa ssp. indica HOM05M005828 ORTHO05M007421 9.1e-42 172.9 111 88.3
OsKitaake12g009400 Oryza sativa Kitaake HOM05M005828 ORTHO05M007421 1.4e-39 165.6 111 84.7
Os12g0112300 Oryza sativa ssp. japonica HOM05M005828 ORTHO05M007421 1.4e-39 165.6 111 84.7
GWHGAZTO013373 Oryza alta HOM05M005828 ORTHO05M007421 6.1e-38 160.2 109 82.6
GWHGAZTO010143 Oryza alta HOM05M005828 ORTHO05M007421 1.8e-37 158.7 109 81.7
GWHGAZTO062388 Oryza alta HOM05M005828 ORTHO05M007421 1.1e-36 156.0 112 81.2
OB11G10500 Oryza brachyantha HOM05M005828 ORTHO05M007421 1.5e-36 155.6 111 80.2
Seita.8G014900 Setaria italica HOM05M005828 ORTHO05M007421 1.7e-32 142.1 112 75.0
Sevir.8G013700 Setaria viridis HOM05M005828 ORTHO05M007421 1.7e-32 142.1 112 75.0
Dexi3B01G0000780 Digitaria exilis HOM05M005828 ORTHO05M007421 2.2e-32 141.7 109 76.1
PH02Gene03407 Phyllostachys edulis HOM05M005828 ORTHO05M007421 5.0e-32 140.6 111 73.0
Dexi8A01G0000730 Digitaria exilis HOM05M005828 ORTHO05M007421 1.9e-31 138.7 94 84.0
Pahal.8G007100 Panicum hallii HOM05M005828 ORTHO05M007421 2.5e-31 138.3 110 74.5
Dexi8B01G0000650 Digitaria exilis HOM05M005828 ORTHO05M007421 4.2e-31 137.5 94 83.0
PH02Gene17517 Phyllostachys edulis HOM05M005828 ORTHO05M007421 4.2e-31 137.5 95 81.1
GWHGAORA043123 Cenchrus purpureus HOM05M005828 ORTHO05M007421 7.2e-31 136.7 110 73.6
Dexi3A01G0000670 Digitaria exilis HOM05M005828 ORTHO05M007421 7.2e-31 136.7 108 72.2
GWHGAORA010811 Cenchrus purpureus HOM05M005828 ORTHO05M007421 9.4e-31 136.3 110 73.6
Sobic.008G032500 Sorghum bicolor HOM05M005828 ORTHO05M007421 1.2e-30 136.0 99 75.8
Zm00001eb406320 Zea mays B73 HOM05M005828 ORTHO05M007421 1.6e-30 135.6 99 74.7
Misin14G042300 Miscanthus sinensis HOM05M005828 ORTHO05M007421 2.7e-30 134.8 99 74.7
Ot_Chr2_gn32811 Oropetium thomaeum HOM05M005828 ORTHO05M007421 4.7e-30 134.0 108 72.2
EJB05_29950 Eragrostis curvula HOM05M005828 ORTHO05M007421 8.0e-30 133.3 99 73.7
Zm00007a00019817 Zea mays B104 HOM05M005828 ORTHO05M008981 1.4e-29 132.5 82 85.4
Zjn_sc00028.1.g04070.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005828 ORTHO05M007421 1.4e-29 132.5 86 81.4
AET4Gv20252100 Aegilops tauschii HOM05M005828 ORTHO05M007421 1.8e-29 132.1 113 68.1
GWHGASIY019321 Secale cereale HOM05M005828 ORTHO05M007421 1.8e-29 132.1 113 69.0
TraesCS4D03G0235200 Triticum aestivum HOM05M005828 ORTHO05M007421 1.8e-29 132.1 113 68.1
Bradi4g25590 Brachypodium distachyon HOM05M005828 ORTHO05M007421 3.0e-29 131.3 110 70.0
Sspon.07G0018240-2C Saccharum spontaneum HOM05M005828 ORTHO05M007421 6.7e-29 130.2 95 77.9
TraesCS4A03G0523100 Triticum aestivum HOM05M005828 ORTHO05M007421 2.6e-28 128.3 98 74.5
TRITD4Av1G152390 Triticum turgidum HOM05M005828 ORTHO05M007421 2.6e-28 128.3 98 74.5
Sspon.07G0018240-1A Saccharum spontaneum HOM05M005828 ORTHO05M007421 4.4e-28 127.5 109 67.9
Horvu_MOREX_4H01G150100 Hordeum vulgare HOM05M005828 ORTHO05M007421 7.5e-28 126.7 113 67.3
TraesCS4B03G0273800 Triticum aestivum HOM05M005828 ORTHO05M007421 7.5e-28 126.7 110 68.2
TRITD4Bv1G048800 Triticum turgidum HOM05M005828 ORTHO05M007421 7.5e-28 126.7 110 68.2
V3.Lp_chr4_0G12558 Lolium perenne HOM05M005828 ORTHO05M007421 1.3e-27 125.9 112 66.1
EJB05_29965 Eragrostis curvula HOM05M005828 ORTHO05M007421 1.6e-25 119.0 125 58.4
Aco012528 Ananas comosus HOM05M005828 ORTHO05M007421 1.7e-24 115.5 99 65.7
p5.00_sc00003_p0289 Elaeis guineensis HOM05M005828 ORTHO05M007421 1.9e-23 112.1 99 62.6
MBI15_g27349_MAGBIO Magnolia biondii HOM05M005828 ORTHO05M007421 3.2e-23 111.3 99 64.6
DDU232G0003 Dioscorea dumetorum HOM05M005828 ORTHO05M007421 4.2e-23 110.9 99 61.6
DDU272G0110 Dioscorea dumetorum HOM05M005828 ORTHO05M007421 4.2e-23 110.9 99 61.6
Ma06_g01080 Musa acuminata HOM05M005828 ORTHO05M007421 5.5e-23 110.5 99 60.6
CDE04G2280 Ceratophyllum demersum HOM05M005828 ORTHO05M007421 2.7e-22 108.2 96 64.6
Misin15G043500 Miscanthus sinensis HOM05M005828 ORTHO05M007421 2.7e-22 108.2 81 74.1
Horvu_MOREX_2H01G120900 Hordeum vulgare HOM05M005828 ORTHO05M007421 3.0e-21 104.8 141 51.1
Solyc06g050210.3 Solanum lycopersicum HOM05M005828 ORTHO05M007421 3.0e-21 104.8 104 57.7
Potri.019G048700 Populus trichocarpa HOM05M005828 ORTHO05M007421 4.0e-21 104.4 99 57.6
Spipo3G0001800 Spirodela polyrhiza HOM05M005828 ORTHO05M007421 4.0e-21 104.4 99 58.6
ATR0681G057 Amborella trichopoda HOM05M005828 ORTHO05M007421 6.8e-21 103.6 96 60.4
Asa0G00969 Allium sativum HOM05M005828 ORTHO05M007421 8.8e-21 103.2 99 58.6
Glyma.19G067100 Glycine max HOM05M005828 ORTHO05M007421 1.2e-20 102.8 99 59.6
Zosma06g21330 Zostera marina HOM05M005828 ORTHO05M007421 4.4e-20 100.9 110 54.5
Asa0G00968 Allium sativum HOM05M005828 ORTHO05M007421 7.5e-20 100.1 99 57.6
GWHGAZTO065361 Oryza alta HOM05M005828 ORTHO05M007421 2.8e-19 98.2 72 76.4
HPP92_019064 Vanilla planifolia HOM05M005828 ORTHO05M007421 1.4e-18 95.9 99 55.6
Horvu_MOREX_4H01G284300 Hordeum vulgare HOM05M005828 ORTHO05M007421 1.9e-15 85.5 72 65.3
Pp3c22_2490 Physcomitrium patens HOM05M005828 ORTHO05M007421 7.2e-15 83.6 106 49.1
Cre08.g361000 Chlamydomonas reinhardtii HOM05M005828 ORTHO05M007421 7.3e-07 57.0 59 47.5


User provided reference genes

Program Settings