Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0106800 Oryza sativa ssp. japonica HOM05M006363 ORTHO05M007542 8.2e-129 463.0 239 100.0
OsKitaake11g001600 Oryza sativa Kitaake HOM05M006363 ORTHO05M007542 2.4e-120 434.9 235 96.6
Os12g0106100 Oryza sativa ssp. japonica HOM05M006363 ORTHO05M007542 5.0e-110 400.6 223 93.7
OsKitaake12g004600 Oryza sativa Kitaake HOM05M006363 ORTHO05M007542 3.2e-109 397.9 231 90.5
GWHGAZTO013310 Oryza alta HOM05M006363 ORTHO05M007542 9.8e-98 359.8 227 83.3
OB11G10190 Oryza brachyantha HOM05M006363 ORTHO05M007542 3.4e-90 334.7 230 77.8
Sobic.005G004600 Sorghum bicolor HOM05M006363 ORTHO05M007542 5.6e-85 317.4 237 72.6
Bradi4g44844 Brachypodium distachyon HOM05M006363 ORTHO05M007542 1.2e-84 316.2 234 72.6
PH02Gene18919 Phyllostachys edulis HOM05M006363 ORTHO05M007542 1.2e-84 316.2 234 73.1
Misin15G033500 Miscanthus sinensis HOM05M006363 ORTHO05M007542 2.1e-84 315.5 236 71.6
Sspon.07G0027990-2C Saccharum spontaneum HOM05M006363 ORTHO05M007542 6.2e-84 313.9 225 74.7
MisinT251900 Miscanthus sinensis HOM05M006363 ORTHO05M007542 1.8e-83 312.4 236 71.6
Sspon.07G0027990-1B Saccharum spontaneum HOM05M006363 ORTHO05M007542 4.0e-83 311.2 227 73.1
TRIDC5BG026560 Triticum dicoccoides HOM05M006363 ORTHO05M007542 1.7e-81 305.8 234 71.8
GWHGAZTO010095 Oryza alta HOM05M006363 ORTHO05M007542 2.2e-81 305.4 194 81.4
TraesCS5B03G0414400 Triticum aestivum HOM05M006363 ORTHO05M007542 2.2e-81 305.4 234 71.8
TRITD5Bv1G094670 Triticum turgidum HOM05M006363 ORTHO05M007542 2.2e-81 305.4 234 71.8
EJB05_30049 Eragrostis curvula HOM05M006363 ORTHO05M007542 2.9e-81 305.1 236 69.1
TraesCS5A03G0417700 Triticum aestivum HOM05M006363 ORTHO05M007542 4.9e-81 304.3 234 71.8
TRITD5Av1G113910 Triticum turgidum HOM05M006363 ORTHO05M007542 4.9e-81 304.3 234 71.8
EJB05_30140 Eragrostis curvula HOM05M006363 ORTHO05M007542 1.1e-80 303.1 236 69.1
AET5Gv20390100 Aegilops tauschii HOM05M006363 ORTHO05M007542 1.9e-80 302.4 234 71.8
TraesCS5D03G0385300 Triticum aestivum HOM05M006363 ORTHO05M007542 1.9e-80 302.4 234 71.8
GWHGAORA026422 Cenchrus purpureus HOM05M006363 ORTHO05M007542 4.1e-80 301.2 236 72.0
Sevir.8G017700 Setaria viridis HOM05M006363 ORTHO05M007542 1.2e-79 299.7 236 71.2
GWHGASIY025545 Secale cereale HOM05M006363 ORTHO05M007542 1.6e-79 299.3 234 70.9
Zm00001eb195020 Zea mays B73 HOM05M006363 ORTHO05M007542 2.7e-79 298.5 239 68.2
Zm00007a00046705 Zea mays B104 HOM05M006363 ORTHO05M007542 2.7e-79 298.5 239 68.2
Misin15G038100 Miscanthus sinensis HOM05M006363 ORTHO05M007542 4.6e-79 297.7 236 69.5
Horvu_MOREX_5H01G261300 Hordeum vulgare HOM05M006363 ORTHO05M007542 7.8e-79 297.0 234 70.1
OsR498G1220799900.01 Oryza sativa ssp. indica HOM05M006363 ORTHO05M007542 2.3e-78 295.4 176 88.6
GWHGAORA054718 Cenchrus purpureus HOM05M006363 ORTHO05M007542 6.6e-78 293.9 236 70.8
EJB05_30091 Eragrostis curvula HOM05M006363 ORTHO05M007542 3.3e-77 291.6 233 69.5
Sspon.05G0021750-1A Saccharum spontaneum HOM05M006363 ORTHO05M007542 9.5e-77 290.0 204 75.5
Pahal.3G002300 Panicum hallii HOM05M006363 ORTHO05M007542 2.3e-75 285.4 239 68.2
Pahal.8G002800 Panicum hallii HOM05M006363 ORTHO05M007542 2.6e-74 282.0 226 69.5
GWHGAZTO065311 Oryza alta HOM05M006363 ORTHO05M007542 4.1e-72 274.6 176 83.0
Ot_Chr2_g24798 Oropetium thomaeum HOM05M006363 ORTHO05M007542 2.5e-69 265.4 234 65.4
TRIDC5AG025390 Triticum dicoccoides HOM05M006363 ORTHO05M007542 1.4e-67 259.6 175 77.7
Sspon.05G0021750-2D Saccharum spontaneum HOM05M006363 ORTHO05M007542 1.4e-64 249.6 178 74.2
Sobic.008G004900 Sorghum bicolor HOM05M006363 ORTHO05M007542 2.3e-62 242.3 182 72.0
Misin14G018800 Miscanthus sinensis HOM05M006363 ORTHO05M007542 4.0e-59 231.5 178 70.2
Seita.8G019300 Setaria italica HOM05M006363 ORTHO05M007542 4.2e-56 221.5 177 70.6
OB12G10460 Oryza brachyantha HOM05M006363 ORTHO05M007542 1.6e-55 219.5 148 76.4
V3.Lp_chr5_0G8998 Lolium perenne HOM05M006363 ORTHO05M007542 1.3e-54 216.5 175 67.4
Dexi3B01G0000340 Digitaria exilis HOM05M006363 ORTHO05M007542 6.9e-43 177.6 178 61.2
Dexi8A01G0000310 Digitaria exilis HOM05M006363 ORTHO05M007542 3.3e-37 158.7 131 67.2
Dexi8B01G0000350 Digitaria exilis HOM05M006363 ORTHO05M007542 3.7e-36 155.2 131 67.9
Zjn_sc00028.1.g04360.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M006363 ORTHO05M007542 1.1e-32 143.7 150 56.7
Zm00001eb025660 Zea mays B73 HOM05M006363 ORTHO05M007542 1.4e-32 143.3 90 80.0
Ma01_g22470 Musa acuminata HOM05M006363 ORTHO05M007542 7.1e-32 141.0 226 43.4
Dexi3A01G0000340 Digitaria exilis HOM05M000112 ORTHO05M007542 5.1e-30 134.8 131 61.1
MBI03_g33621_MAGBIO Magnolia biondii HOM05M006363 ORTHO05M007542 8.7e-30 134.0 291 34.4
Zosma04g25510 Zostera marina HOM05M006363 ORTHO05M007542 8.7e-30 134.0 214 40.2
Zm00007a00044674 Zea mays B104 HOM05M006363 ORTHO05M007542 1.5e-29 133.3 89 74.2
Potri.001G281500 Populus trichocarpa HOM05M006363 ORTHO05M007542 1.9e-29 132.9 233 39.1
HPP92_019711 Vanilla planifolia HOM05M006363 ORTHO05M004504 5.7e-29 131.3 221 40.3
p5.00_sc00358_p0009 Elaeis guineensis HOM05M006363 ORTHO05M007542 7.4e-29 131.0 172 46.5
AT1G07060 Arabidopsis thaliana HOM05M006363 ORTHO05M007542 1.6e-28 129.8 238 40.3
Asa3G04813 Allium sativum HOM05M006363 ORTHO05M007542 9.0e-27 124.0 175 42.3
CALSI_Maker00020818 Calamus simplicifolius HOM05M006363 ORTHO05M007542 1.7e-25 119.8 175 42.3
evm.TU.AsparagusV1_08.3418.V1.1 Asparagus officinalis HOM05M006363 ORTHO05M007542 1.6e-23 113.2 166 43.4
DDU550G0563 Dioscorea dumetorum HOM05M006363 ORTHO05M007542 1.3e-22 110.2 164 42.1
Aco000558 Ananas comosus HOM05M006363 ORTHO05M007542 1.5e-21 106.7 126 51.6
Zm00007a00051422 Zea mays B104 HOM05M000888 ORTHO05M007542 7.4e-21 104.4 104 57.7
CALSI_Maker00026522 Calamus simplicifolius HOM05M006363 ORTHO05M007542 2.8e-20 102.4 113 46.9
CALSI_Maker00027309 Calamus simplicifolius HOM05M006363 ORTHO05M007542 2.8e-20 102.4 113 46.9
ATR0174G030 Amborella trichopoda HOM05M006363 ORTHO05M007542 1.8e-19 99.8 174 36.8
SEGI_02179 Sequoiadendron giganteum HOM05M034555 ORTHO05M007542 5.5e-16 88.2 210 32.4
Glyma.18G058101 Glycine max HOM05M006363 ORTHO05M007542 4.6e-15 85.1 118 42.4
Solyc06g082320.4 Solanum lycopersicum HOM05M006363 ORTHO05M007542 1.7e-12 76.6 84 48.8


User provided reference genes

Program Settings