Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0103400 Oryza sativa ssp. japonica HOM05M000417 ORTHO05M003013 4.4e-228 793.5 400 100.0
OsKitaake12g002200 Oryza sativa Kitaake HOM05M000417 ORTHO05M003013 5.8e-196 686.8 358 96.1
Os12g0102900 Oryza sativa ssp. japonica HOM05M000417 ORTHO05M003013 5.8e-196 686.8 358 96.1
GWHGAZTO010067 Oryza alta HOM05M000417 ORTHO05M003013 2.9e-147 525.0 307 89.6
GWHGAZTO013275 Oryza alta HOM05M000417 ORTHO05M003013 1.3e-131 473.0 287 86.4
PH02Gene18936 Phyllostachys edulis HOM05M000417 ORTHO05M003013 2.1e-116 422.5 336 66.4
PH02Gene13658 Phyllostachys edulis HOM05M000417 ORTHO05M003013 1.8e-112 409.5 336 64.3
EJB05_02638 Eragrostis curvula HOM05M000417 ORTHO05M003013 4.4e-111 404.8 301 68.8
EJB05_02626 Eragrostis curvula HOM05M000417 ORTHO05M003013 9.9e-111 403.7 301 68.4
V3.Lp_chr5_0G9366 Lolium perenne HOM05M000417 ORTHO05M003013 9.9e-111 403.7 292 69.9
Pahal.5G430500 Panicum hallii HOM05M000417 ORTHO05M003013 2.2e-110 402.5 303 67.0
Pahal.5G255900 Panicum hallii HOM05M000417 ORTHO05M003013 4.9e-110 401.4 301 67.8
Bradi4g45200 Brachypodium distachyon HOM05M000417 ORTHO05M003013 8.4e-110 400.6 295 67.8
GWHGASIY025588 Secale cereale HOM05M000417 ORTHO05M003013 1.9e-109 399.4 296 68.6
TraesCS5A03G0425100 Triticum aestivum HOM05M000417 ORTHO05M003013 7.1e-109 397.5 294 68.7
TRITD5Av1G115920 Triticum turgidum HOM05M000417 ORTHO05M003013 7.1e-109 397.5 294 68.7
TraesCS5B03G0420600 Triticum aestivum HOM05M000417 ORTHO05M003013 1.2e-108 396.7 294 69.0
TRITD5Bv1G096840 Triticum turgidum HOM05M000417 ORTHO05M003013 1.2e-108 396.7 294 69.0
TraesCS5D03G0393600 Triticum aestivum HOM05M000417 ORTHO05M003013 7.8e-108 394.0 294 68.4
AET5Gv20395400 Aegilops tauschii HOM05M000417 ORTHO05M003013 3.0e-107 392.1 294 68.0
Ot_Chr2_gn32680 Oropetium thomaeum HOM05M000417 ORTHO05M003013 1.5e-106 389.8 301 65.8
Dexi5B01G0011480 Digitaria exilis HOM05M000417 ORTHO05M003013 1.3e-105 386.7 300 65.3
EJB05_30153 Eragrostis curvula HOM05M000417 ORTHO05M003013 1.1e-104 383.6 299 65.6
GWHGAORA033153 Cenchrus purpureus HOM05M000417 ORTHO05M003013 4.0e-104 381.7 306 64.4
TraesCS5A03G0425200 Triticum aestivum HOM05M000417 ORTHO05M003013 2.0e-103 379.4 299 64.5
TRITD5Av1G115930 Triticum turgidum HOM05M000417 ORTHO05M003013 2.0e-103 379.4 299 64.5
EJB05_53205 Eragrostis curvula HOM05M000417 ORTHO05M003013 4.4e-103 378.3 297 64.6
TraesCS5B03G0421300 Triticum aestivum HOM05M000417 ORTHO05M003013 7.6e-103 377.5 296 64.2
TRITD5Bv1G096760 Triticum turgidum HOM05M000417 ORTHO05M003013 7.6e-103 377.5 296 64.2
EJB05_30079 Eragrostis curvula HOM05M000417 ORTHO05M003013 9.9e-103 377.1 299 64.2
GWHGASIY025589 Secale cereale HOM05M000417 ORTHO05M003013 1.1e-101 373.6 299 63.5
AET5Gv20395800 Aegilops tauschii HOM05M000417 ORTHO05M003013 9.3e-101 370.5 299 63.9
TraesCS5D03G0393800 Triticum aestivum HOM05M000417 ORTHO05M003013 9.3e-101 370.5 299 63.9
GWHGAORA041811 Cenchrus purpureus HOM05M000417 ORTHO05M003013 1.2e-100 370.2 336 59.2
TRIDC5BG026960 Triticum dicoccoides HOM05M000417 ORTHO05M003013 8.7e-99 364.0 274 67.2
Bradi2g18110 Brachypodium distachyon HOM05M000417 ORTHO05M003013 2.5e-98 362.5 302 63.9
Sspon.05G0021670-2P Saccharum spontaneum HOM05M000417 ORTHO05M003013 3.3e-98 362.1 298 62.4
Sobic.005G001600 Sorghum bicolor HOM05M000417 ORTHO05M003013 4.3e-98 361.7 298 62.8
Sspon.05G0021670-2B Saccharum spontaneum HOM05M000417 ORTHO05M003013 2.1e-97 359.4 298 62.1
GWHGAORA038781 Cenchrus purpureus HOM05M000417 ORTHO05M003013 1.1e-96 357.1 303 61.4
Seita.3G152200 Setaria italica HOM05M000417 ORTHO05M003013 1.7e-94 349.7 292 62.0
Sevir.3G155000 Setaria viridis HOM05M000417 ORTHO05M003013 1.7e-94 349.7 292 62.0
Zm00007a00014480 Zea mays B104 HOM05M000417 ORTHO05M003013 2.7e-92 342.4 296 60.5
Zm00001eb194870 Zea mays B73 HOM05M000417 ORTHO05M003013 5.1e-91 338.2 296 60.1
Sspon.05G0021670-3C Saccharum spontaneum HOM05M000417 ORTHO05M003013 3.3e-90 335.5 325 56.0
Ot_Chr2_g22219 Oropetium thomaeum HOM05M000417 ORTHO05M003013 1.2e-87 327.0 293 60.1
Zjn_sc00097.1.g00800.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000417 ORTHO05M003013 1.0e-86 323.9 298 60.1
OsR498G1119279500.01 Oryza sativa ssp. indica HOM05M000417 ORTHO05M003013 2.9e-86 322.4 164 99.4
GWHGAORA017263 Cenchrus purpureus HOM05M000417 ORTHO05M003013 6.5e-86 321.2 247 61.9
GWHGAZTO065282 Oryza alta HOM05M000417 ORTHO05M003013 8.4e-78 294.3 158 92.4
GWHGAORA003838 Cenchrus purpureus HOM05M000417 ORTHO05M003013 7.1e-77 291.2 346 51.7
Misin19G050600 Miscanthus sinensis HOM05M000417 ORTHO05M003013 1.3e-75 287.0 305 53.8
Sevir.5G058500 Setaria viridis HOM05M000417 ORTHO05M003013 2.8e-73 279.3 341 48.7
TRITD7Av1G055180 Triticum turgidum HOM05M000417 ORTHO05M003013 1.1e-72 277.3 297 52.5
V3.Lp_chr7_0.1G2006 Lolium perenne HOM05M000417 ORTHO05M003013 1.8e-72 276.6 329 50.8
GWHGASIY018762 Secale cereale HOM05M000417 ORTHO05M003013 6.9e-72 274.6 291 51.2
AET7Gv20449700 Aegilops tauschii HOM05M000417 ORTHO05M003013 1.7e-70 270.0 284 52.5
EJB05_51715 Eragrostis curvula HOM05M000417 ORTHO05M003013 5.0e-70 268.5 209 62.7
GWHGASIY021055 Secale cereale HOM05M000417 ORTHO05M003013 4.6e-68 261.9 298 52.0
TraesCS7D03G0392500 Triticum aestivum HOM05M000417 ORTHO05M003013 2.0e-66 256.5 301 49.5
Sspon.07G0016590-1A Saccharum spontaneum HOM05M000417 ORTHO05M003013 3.4e-63 245.7 287 50.9
Aco012460 Ananas comosus HOM05M000417 ORTHO05M003013 2.9e-62 242.7 297 44.1
Sspon.07G0016590-2B Saccharum spontaneum HOM05M000417 ORTHO05M003013 1.1e-61 240.7 287 50.2
GWHGAORA041820 Cenchrus purpureus HOM05M000417 ORTHO05M003013 4.2e-61 238.8 332 46.7
p5.00_sc00003_p0160 Elaeis guineensis HOM05M000417 ORTHO05M003013 2.3e-59 233.0 290 41.7
Dexi5A01G0011190 Digitaria exilis HOM05M000417 ORTHO05M003013 6.7e-59 231.5 184 66.3
Spipo29G0019300 Spirodela polyrhiza HOM05M000417 ORTHO05M003013 1.7e-57 226.9 306 40.8
Ma10_g03370 Musa acuminata HOM05M000417 ORTHO05M003013 2.2e-57 226.5 289 42.6
GWHGAORA017246 Cenchrus purpureus HOM05M000417 ORTHO05M003013 1.2e-55 220.7 309 44.3
DDU174G0040 Dioscorea dumetorum HOM05M000417 ORTHO05M003013 1.2e-55 220.7 295 41.7
DDU550G0071 Dioscorea dumetorum HOM05M000417 ORTHO05M003013 1.0e-54 217.6 295 41.4
MBI14_g39106_MAGBIO Magnolia biondii HOM05M000417 ORTHO05M003013 2.9e-54 216.1 303 37.0
PH02Gene36623 Phyllostachys edulis HOM05M000417 ORTHO05M003013 4.2e-53 212.2 173 64.7
HPP92_015574 Vanilla planifolia HOM05M000417 ORTHO05M003013 2.1e-52 209.9 303 41.3
Sspon.05G0021670-1A Saccharum spontaneum HOM05M000417 ORTHO05M003013 2.6e-50 203.0 203 53.7
ATR1159G022 Amborella trichopoda HOM05M000417 ORTHO05M003013 2.8e-49 199.5 292 38.0
evm.TU.AsparagusV1_07.383.V1.1 Asparagus officinalis HOM05M000417 ORTHO05M003013 7.0e-48 194.9 236 42.4
Zm00007a00036176 Zea mays B104 HOM05M000417 ORTHO05M003013 1.7e-46 190.3 228 46.1
CALSI_Maker00020794 Calamus simplicifolius HOM05M000417 ORTHO05M003013 5.0e-46 188.7 189 45.5
TRITD7Bv1G030900 Triticum turgidum HOM05M000417 ORTHO05M003013 8.5e-46 188.0 163 58.3
Misin14G001300 Miscanthus sinensis HOM05M000417 ORTHO05M003013 1.2e-44 184.1 220 47.3
GWHGAORA043163 Cenchrus purpureus HOM05M000417 ORTHO05M003013 3.6e-44 182.6 233 47.2
Sspon.05G0021670-1P Saccharum spontaneum HOM05M000417 ORTHO05M003013 1.0e-43 181.0 126 65.9
Glyma.11G152542 Glycine max HOM05M000417 ORTHO05M003013 5.7e-42 175.3 290 35.2
Potri.009G150100 Populus trichocarpa HOM05M000417 ORTHO05M003013 2.2e-41 173.3 316 31.6
Glyma.12G071900 Glycine max HOM05M000417 ORTHO05M003013 3.7e-41 172.6 254 36.6
Potri.006G104700 Populus trichocarpa HOM05M000417 ORTHO05M003013 4.8e-41 172.2 281 34.9
Zosma06g21390 Zostera marina HOM05M000417 ORTHO05M003013 1.4e-40 170.6 310 33.2
EJB05_30082 Eragrostis curvula HOM05M000417 ORTHO05M003013 7.0e-40 168.3 213 49.3
TRIDC5AG025830 Triticum dicoccoides HOM05M000417 ORTHO05M003013 9.1e-40 167.9 114 68.4
SEGI_38593 Sequoiadendron giganteum HOM05M000417 ORTHO05M003013 1.2e-39 167.5 299 31.4
Asa7G02206 Allium sativum HOM05M000417 ORTHO05M003013 3.8e-38 162.5 295 35.6
Asa7G03219 Allium sativum HOM05M000417 ORTHO05M003013 5.0e-38 162.2 295 35.6
Solyc06g005000.3 Solanum lycopersicum HOM05M000417 ORTHO05M003013 3.2e-37 159.5 269 35.3
EJB05_50040 Eragrostis curvula HOM05M000417 ORTHO05M003013 8.0e-36 154.8 134 55.2
GWHGAZTO065281 Oryza alta HOM05M000417 ORTHO05M003013 4.9e-33 145.6 127 68.5
Zjn_sc00028.1.g04530.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000417 ORTHO05M003013 6.3e-33 145.2 176 51.1
MisinT054600 Miscanthus sinensis HOM05M000417 ORTHO05M003013 2.0e-31 140.2 219 39.3
Sobic.002G126100 Sorghum bicolor HOM05M000417 ORTHO05M003013 1.7e-30 137.1 108 59.3
AT5G60250 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 2.3e-30 136.7 217 35.9
Dexi4B01G0006480 Digitaria exilis HOM05M000417 ORTHO05M003013 6.6e-30 135.2 120 58.3
MisinT103600 Miscanthus sinensis HOM05M000417 ORTHO05M003013 4.2e-29 132.5 177 45.2
Dexi4A01G0004390 Digitaria exilis HOM05M000417 ORTHO05M003013 8.6e-22 108.2 190 41.1
AT5G37560 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 3.6e-20 102.8 211 29.9
EJB05_30080 Eragrostis curvula HOM05M000417 ORTHO05M003013 8.9e-19 98.2 50 86.0
Mapoly0010s0070 Marchantia polymorpha HOM05M000417 ORTHO05M000629 1.2e-18 97.8 292 24.3
MisinT054500 Miscanthus sinensis HOM05M000417 ORTHO05M003013 7.5e-18 95.1 50 80.0
AT2G25360 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 4.9e-17 92.4 153 35.3
AT2G26130 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 6.4e-17 92.0 225 26.7
AT3G45480 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 1.4e-16 90.9 155 32.9
EJB05_51714 Eragrostis curvula HOM05M005735 ORTHO05M014899 3.2e-16 89.7 58 74.1
AT3G43750 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 2.7e-15 86.7 220 25.0
EJB05_53216 Eragrostis curvula HOM05M000417 ORTHO05M003013 4.6e-15 85.9 54 77.8
AT3G45560 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 2.3e-14 83.6 210 26.2
AT3G45580 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 8.6e-14 81.6 216 26.9
AT2G25370 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 1.5e-13 80.9 212 27.8
Pp3c8_11630 Physcomitrium patens HOM05M000417 ORTHO05M003013 1.5e-13 80.9 201 26.4
AT3G45570 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 1.9e-13 80.5 215 25.6
AT2G21420 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 4.3e-13 79.3 211 25.1
EJB05_51718 Eragrostis curvula HOM05M000417 ORTHO05M110357 2.8e-12 76.6 72 58.3
EJB05_53207 Eragrostis curvula HOM05M000417 ORTHO05M003013 8.1e-12 75.1 72 56.9
Bradi4g00980 Brachypodium distachyon HOM05M000417 ORTHO05M009158 2.3e-11 73.6 215 27.4
AT2G19610 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 6.8e-11 72.0 275 23.6
TraesCS5A03G0037900 Triticum aestivum HOM05M000417 ORTHO05M009158 1.5e-10 70.9 237 26.2
TRIDC5AG002400 Triticum dicoccoides HOM05M000417 ORTHO05M009158 1.5e-10 70.9 237 26.2
TRITD5Av1G006400 Triticum turgidum HOM05M000417 ORTHO05M009158 1.5e-10 70.9 237 26.2
AT3G45460 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 2.6e-10 70.1 155 26.5
ATR0763G142 Amborella trichopoda HOM05M000417 ORTHO05M009158 3.4e-10 69.7 247 23.5
AagrBONN_evm.TU.Sc2ySwM_344.4279 Anthoceros agrestis HOM05M000417 ORTHO05M000629 3.4e-10 69.7 294 21.4
AET5Gv20044900 Aegilops tauschii HOM05M000417 ORTHO05M009158 4.4e-10 69.3 237 26.2
TraesCS5D03G0049100 Triticum aestivum HOM05M000417 ORTHO05M009158 4.4e-10 69.3 237 26.2
GWHGASIY024085 Secale cereale HOM05M000417 ORTHO05M009158 9.8e-10 68.2 267 24.7
TraesCS5B03G0030600 Triticum aestivum HOM05M000417 ORTHO05M009158 9.8e-10 68.2 237 25.7
TRIDC5BG002230 Triticum dicoccoides HOM05M000417 ORTHO05M009158 9.8e-10 68.2 237 25.7
TRITD5Bv1G005300 Triticum turgidum HOM05M000417 ORTHO05M009158 9.8e-10 68.2 237 25.7
PH02Gene18028 Phyllostachys edulis HOM05M000417 ORTHO05M009158 2.2e-09 67.0 222 26.1
AT3G45540 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 2.9e-09 66.6 123 29.3
Ma09_g26810 Musa acuminata HOM05M000417 ORTHO05M009158 1.9e-08 63.9 207 26.1
CALSI_Maker00034004 Calamus simplicifolius HOM05M000417 ORTHO05M009158 5.4e-08 62.4 206 26.2
Potri.015G117600 Populus trichocarpa HOM05M000417 ORTHO05M009158 7.1e-08 62.0 209 26.3
OsR498G1220790100.01 Oryza sativa ssp. indica HOM05M000417 ORTHO05M003013 1.6e-07 60.8 32 84.4
AT3G43180 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 4.6e-07 59.3 82 34.1
EJB05_00102 Eragrostis curvula HOM05M000417 ORTHO05M009158 6.0e-07 58.9 285 23.2
AT3G45470 Arabidopsis thaliana HOM05M000417 ORTHO05M003013 1.0e-06 58.2 58 39.7
SMO330G0011 Selaginella moellendorffii HOM05M000417 ORTHO05M003013 1.0e-06 58.2 61 42.6
SMO147G0125 Selaginella moellendorffii HOM05M000417 ORTHO05M003013 2.3e-06 57.0 61 42.6
SMO147G0272 Selaginella moellendorffii HOM05M000417 ORTHO05M000629 2.3e-06 57.0 61 42.6
GWHGAZTO051387 Oryza alta HOM05M000417 ORTHO05M000629 3.0e-06 56.6 63 38.1
OsR498G0917469500.01 Oryza sativa ssp. indica HOM05M000417 ORTHO05M000629 5.1e-06 55.8 63 36.5
OsKitaake09g101300 Oryza sativa Kitaake HOM05M000417 ORTHO05M000629 8.6e-06 55.1 63 36.5
Os09g0419500 Oryza sativa ssp. japonica HOM05M000417 ORTHO05M000629 8.6e-06 55.1 63 36.5
TraesCS5A03G0575200 Triticum aestivum HOM05M000417 ORTHO05M000629 8.6e-06 55.1 50 40.0
TRITD5Av1G143100 Triticum turgidum HOM05M000417 ORTHO05M000629 8.6e-06 55.1 50 40.0


User provided reference genes

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