Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0100300 Oryza sativa ssp. japonica HOM05M004146 ORTHO05M005017 0.0e+00 1513.8 846 100.0
Os12g0100200 Oryza sativa ssp. japonica HOM05M004146 ORTHO05M005017 0.0e+00 1513.8 846 100.0
OsKitaake12g000400 Oryza sativa Kitaake HOM05M004146 ORTHO05M005017 0.0e+00 1479.2 828 100.0
GWHGAZTO010033 Oryza alta HOM05M004146 ORTHO05M005017 0.0e+00 1094.3 872 77.2
OB0082G10110 Oryza brachyantha HOM05M004146 ORTHO05M005017 1.5e-238 829.3 827 65.9
GWHGAZTO065252 Oryza alta HOM05M004146 ORTHO05M005017 4.0e-210 734.9 584 76.9
PH02Gene13646 Phyllostachys edulis HOM05M004146 ORTHO05M005017 6.8e-194 681.0 948 52.3
PH02Gene34361 Phyllostachys edulis HOM05M004146 ORTHO05M005017 8.9e-194 680.6 932 49.6
Horvu_MOREX_5H01G271400 Hordeum vulgare HOM05M004146 ORTHO05M005017 1.5e-185 653.3 874 52.6
V3.Lp_chr5_0G9546 Lolium perenne HOM05M004146 ORTHO05M005017 2.0e-185 652.9 864 52.1
TraesCS5D03G0399100 Triticum aestivum HOM05M004146 ORTHO05M005017 9.8e-185 650.6 878 49.8
TraesCS5A03G0430200 Triticum aestivum HOM05M004146 ORTHO05M005017 1.9e-183 646.4 875 50.9
TRITD5Av1G117910 Triticum turgidum HOM05M004146 ORTHO05M005017 1.9e-183 646.4 875 50.9
TraesCS5B03G0425300 Triticum aestivum HOM05M004146 ORTHO05M005017 9.2e-183 644.0 872 50.3
TRITD5Bv1G095530 Triticum turgidum HOM05M004146 ORTHO05M005017 9.2e-183 644.0 872 50.3
GWHGASIY025614 Secale cereale HOM05M004146 ORTHO05M005017 1.2e-182 643.7 865 51.4
Zjn_sc00031.1.g00030.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M004146 ORTHO05M005017 1.7e-173 613.2 843 49.6
TRIDC5AG026170 Triticum dicoccoides HOM05M004146 ORTHO05M005017 2.3e-170 602.8 854 48.0
Pahal.8G001300 Panicum hallii HOM05M004146 ORTHO05M005017 3.1e-170 602.4 866 48.5
TRIDC5BG027340 Triticum dicoccoides HOM05M004146 ORTHO05M005017 7.6e-169 597.8 843 48.6
Bradi4g45370 Brachypodium distachyon HOM05M004146 ORTHO05M005017 6.6e-165 584.7 851 51.9
Sspon.05G0021700-2D Saccharum spontaneum HOM05M004146 ORTHO05M005017 3.3e-164 582.4 870 46.7
Seita.8G000700 Setaria italica HOM05M004146 ORTHO05M005017 8.1e-163 577.8 888 45.9
Sobic.K010100 Sorghum bicolor HOM05M004146 ORTHO05M005017 8.1e-163 577.8 882 48.5
Sevir.8G000900 Setaria viridis HOM05M004146 ORTHO05M005017 3.1e-162 575.9 896 45.6
Misin15G201500 Miscanthus sinensis HOM05M004146 ORTHO05M005017 1.2e-161 573.9 872 46.6
OB0097G10010 Oryza brachyantha HOM05M004146 ORTHO05M005017 2.4e-159 566.2 559 64.0
Seita.7G335000 Setaria italica HOM05M004146 ORTHO05M005017 3.0e-157 559.3 853 47.0
Dexi3B01G0000020 Digitaria exilis HOM05M004146 ORTHO05M005017 1.5e-156 557.0 866 47.7
Ot_Chr2_gn32846 Oropetium thomaeum HOM05M004146 ORTHO05M005017 3.3e-156 555.8 838 48.0
Dexi3A01G0000100 Digitaria exilis HOM05M004146 ORTHO05M005017 7.3e-156 554.7 760 51.1
Zm00001eb163090 Zea mays B73 HOM05M004146 ORTHO05M005017 2.4e-154 549.7 882 47.4
Zm00007a00017977 Zea mays B104 HOM05M004146 ORTHO05M005017 2.4e-154 549.7 882 47.4
Sspon.05G0021700-1A Saccharum spontaneum HOM05M004146 ORTHO05M005017 4.2e-151 538.9 845 45.3
GWHGAORA043193 Cenchrus purpureus HOM05M004146 ORTHO05M005017 6.0e-150 535.0 832 45.8
GWHGAZTO062278 Oryza alta HOM05M004146 ORTHO05M005017 3.6e-147 525.8 369 85.4
OsR498G1220783200.01 Oryza sativa ssp. indica HOM05M004146 ORTHO05M005017 1.0e-133 481.1 290 94.8
GWHGAORA043174 Cenchrus purpureus HOM05M004146 ORTHO05M005017 3.1e-130 469.5 808 42.2
CALSI_Maker00026368 Calamus simplicifolius HOM05M004146 ORTHO05M005017 3.2e-103 379.8 848 36.3
p5.00_sc00003_p0060 Elaeis guineensis HOM05M004146 ORTHO05M005017 2.1e-102 377.1 856 36.6
Aco014203 Ananas comosus HOM05M004146 ORTHO05M005017 1.1e-95 354.8 846 35.6
Ma00_g04980 Musa acuminata HOM05M004146 ORTHO05M005017 9.1e-90 335.1 881 34.6
AET5Gv20401400 Aegilops tauschii HOM05M004146 ORTHO05M005017 4.5e-89 332.8 378 54.5
Sevir.7G340557 Setaria viridis HOM05M004146 ORTHO05M005017 1.0e-85 321.6 625 41.0
Potri.009G028600 Populus trichocarpa HOM05M004146 ORTHO05M005017 2.3e-85 320.5 852 31.8
Solyc11g066140.2 Solanum lycopersicum HOM05M004146 ORTHO05M005017 2.6e-84 317.0 851 31.3
Potri.001G237300 Populus trichocarpa HOM05M004146 ORTHO05M005017 8.3e-83 312.0 851 31.5
CALSI_Maker00038561 Calamus simplicifolius HOM05M004146 ORTHO05M005017 3.5e-81 306.6 838 32.5
Solyc06g075970.4 Solanum lycopersicum HOM05M004146 ORTHO05M005017 4.5e-81 306.2 840 31.0
Dexi8B01G0000040 Digitaria exilis HOM05M004146 ORTHO05M005017 2.9e-80 303.5 291 59.8
Asa3G01266 Allium sativum HOM05M004146 ORTHO05M005017 9.5e-79 298.5 691 33.4
Asa2G03579 Allium sativum HOM05M004146 ORTHO05M005017 2.0e-76 290.8 812 32.6
AT2G28780 Arabidopsis thaliana HOM05M004146 ORTHO05M005017 2.2e-75 287.3 852 30.9
Glyma.13G334600 Glycine max HOM05M004146 ORTHO05M005017 5.4e-74 282.7 849 31.3
Solyc10g084720.1 Solanum lycopersicum HOM05M004146 ORTHO05M005017 1.9e-71 274.2 848 31.2
Potri.006G082000 Populus trichocarpa HOM05M004146 ORTHO05M005017 8.3e-67 258.8 847 30.2
DDU550G0776 Dioscorea dumetorum HOM05M004146 ORTHO05M005017 7.8e-65 252.3 833 28.9
Glyma.03G171200 Glycine max HOM05M004146 ORTHO05M005017 1.0e-64 251.9 700 31.4
DDU151G0032 Dioscorea dumetorum HOM05M004146 ORTHO05M005017 4.3e-63 246.5 835 28.9
AT3G09450 Arabidopsis thaliana HOM05M004146 ORTHO05M005017 2.3e-53 214.2 835 27.9
SEGI_09335 Sequoiadendron giganteum HOM05M004146 ORTHO05M005017 6.4e-51 206.1 889 25.3
evm.TU.AsparagusV1_02.162.V1.1 Asparagus officinalis HOM05M004146 ORTHO05M005017 3.1e-45 187.2 386 36.0
evm.TU.AsparagusV1_02.160.V1.1 Asparagus officinalis HOM05M004146 ORTHO05M005017 8.4e-43 179.1 455 33.4
MBI14_g11681_MAGBIO Magnolia biondii HOM05M004146 ORTHO05M005017 3.9e-40 170.2 245 42.4
Asa7G07040 Allium sativum HOM05M004146 ORTHO05M005017 5.6e-39 166.4 381 33.6
Asa2G03578 Allium sativum HOM05M004146 ORTHO05M005017 1.3e-38 165.2 368 35.3
ATR0559G166 Amborella trichopoda HOM05M004146 ORTHO05M005017 8.1e-38 162.5 541 29.2
Aco022322 Ananas comosus HOM05M004146 ORTHO05M005017 2.0e-36 157.9 201 48.8
Asa7G07039 Allium sativum HOM05M004146 ORTHO05M005017 5.4e-34 149.8 304 36.8
Os05g0492300 Oryza sativa ssp. japonica HOM05M004146 ORTHO05M005017 6.7e-32 142.9 109 75.2
MBI14_g11682_MAGBIO Magnolia biondii HOM05M004146 ORTHO05M005017 2.1e-30 137.9 258 35.3
Asa2G03580 Allium sativum HOM05M004146 ORTHO05M005017 6.2e-30 136.3 376 33.2
TraesCS4B03G0163600 Triticum aestivum HOM05M004146 ORTHO05M005017 2.3e-24 117.9 99 69.7
TRITD4Bv1G024700 Triticum turgidum HOM05M004146 ORTHO05M005017 2.3e-24 117.9 99 69.7
Solyc09g010570.1 Solanum lycopersicum HOM05M004146 ORTHO05M005017 4.5e-20 103.6 173 39.3
SMO361G0017 Selaginella moellendorffii HOM05M004146 ORTHO05M005017 5.8e-20 103.2 841 22.4
ATR0559G229 Amborella trichopoda HOM05M004146 ORTHO05M005017 1.3e-16 92.0 169 37.9
SMO199G0110 Selaginella moellendorffii HOM05M004146 ORTHO05M005017 7.2e-10 69.7 828 21.4
SMO340G0081 Selaginella moellendorffii HOM05M004146 ORTHO05M005017 1.6e-09 68.6 713 20.8
Mapoly0005s0035 Marchantia polymorpha HOM05M004146 ORTHO05M005017 7.9e-09 66.2 260 24.2

Aegilops tauschii (1 genes)
Allium sativum (6 genes)
Amborella trichopoda (2 genes)
Ananas comosus (2 genes)
Anthoceros agrestis (0 genes)
Arabidopsis thaliana (2 genes)
Asparagus officinalis (2 genes)
Brachypodium distachyon (1 genes)
Calamus simplicifolius (2 genes)
Cenchrus purpureus (2 genes)
Ceratophyllum demersum (0 genes)
Chara braunii (0 genes)
Chlamydomonas reinhardtii (0 genes)
Digitaria exilis (3 genes)
Dioscorea dumetorum (2 genes)
Elaeis guineensis (1 genes)
Eragrostis curvula (0 genes)
Glycine max (2 genes)
Hordeum vulgare (1 genes)
Lolium perenne (1 genes)
Magnolia biondii (2 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (0 genes)
Miscanthus sinensis (1 genes)
Musa acuminata (1 genes)
Oropetium thomaeum (1 genes)
Oryza alta (3 genes)
Oryza brachyantha (2 genes)
Oryza sativa Kitaake (1 genes)
Oryza sativa ssp. indica (1 genes)
Oryza sativa ssp. japonica (3 genes)
Panicum hallii (1 genes)
Phyllostachys edulis (2 genes)
Physcomitrium patens (0 genes)
Populus trichocarpa (3 genes)
Prasinoderma coloniale (0 genes)
Saccharum spontaneum (2 genes)
Secale cereale (1 genes)
Selaginella moellendorffii (3 genes)
Sequoiadendron giganteum (1 genes)
Setaria italica (2 genes)
Setaria viridis (2 genes)
Solanum lycopersicum (4 genes)
Sorghum bicolor (1 genes)
Spirodela polyrhiza (0 genes)
Triticum aestivum (4 genes)
Triticum dicoccoides (2 genes)
Triticum turgidum (3 genes)
Vanilla planifolia (0 genes)
Zea mays B73 (1 genes)
Zea mays B104 (1 genes)
Zostera marina (0 genes)
Zoysia japonica ssp. nagirizaki (1 genes)

Program Settings