Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G303400 Miscanthus sinensis HOM05M005400 ORTHO05M006202 1.2e-75 285.8 162 100.0
Sspon.04G0022450-1P Saccharum spontaneum HOM05M005400 ORTHO05M006202 1.5e-73 278.9 162 97.5
Sspon.04G0022450-2C Saccharum spontaneum HOM05M005400 ORTHO05M006202 1.5e-73 278.9 162 97.5
Misin07G475200 Miscanthus sinensis HOM05M005400 ORTHO05M006202 2.5e-73 278.1 162 96.9
Sspon.04G0022450-1B Saccharum spontaneum HOM05M005400 ORTHO05M006202 2.1e-72 275.0 160 96.9
Sobic.004G231800 Sorghum bicolor HOM05M005400 ORTHO05M006202 3.4e-70 267.7 160 95.0
DexiUA01G0007410 Digitaria exilis HOM05M005400 ORTHO05M006202 5.1e-66 253.8 164 89.0
Zm00007a00005477 Zea mays B104 HOM05M005400 ORTHO05M006202 2.5e-65 251.5 162 88.9
Dexi1A01G0028790 Digitaria exilis HOM05M005400 ORTHO05M006202 5.7e-65 250.4 164 87.8
Dexi1B01G0026670 Digitaria exilis HOM05M005400 ORTHO05M006202 5.7e-65 250.4 164 87.8
DexiUA01G0021880 Digitaria exilis HOM05M005400 ORTHO05M006202 5.7e-65 250.4 164 87.8
Pahal.1G401200 Panicum hallii HOM05M005400 ORTHO05M006202 4.8e-64 247.3 160 87.5
Zm00001eb194130 Zea mays B73 HOM05M005400 ORTHO05M006202 1.7e-61 238.8 162 85.2
GWHGAORA060782 Cenchrus purpureus HOM05M005400 ORTHO05M006202 3.8e-61 237.7 162 84.0
Seita.1G324700 Setaria italica HOM05M005400 ORTHO05M006202 3.8e-61 237.7 162 85.2
Sevir.1G331400 Setaria viridis HOM05M005400 ORTHO05M006202 3.8e-61 237.7 162 85.2
GWHGAORA025318 Cenchrus purpureus HOM05M005400 ORTHO05M006202 5.0e-61 237.3 162 84.0
PH02Gene00990 Phyllostachys edulis HOM05M005400 ORTHO05M006202 1.1e-60 236.1 162 82.7
EJB05_20095 Eragrostis curvula HOM05M005400 ORTHO05M006202 1.9e-60 235.3 164 84.1
Zm00001eb255290 Zea mays B73 HOM05M005400 ORTHO05M006202 2.5e-60 235.0 162 85.2
Zm00007a00042441 Zea mays B104 HOM05M005400 ORTHO05M006202 2.5e-60 235.0 162 85.2
GWHGAORA060789 Cenchrus purpureus HOM05M005400 ORTHO05M006202 6.1e-59 230.3 164 82.3
GWHGAZTO020848 Oryza alta HOM05M005400 ORTHO05M006202 1.0e-58 229.6 163 82.2
PH02Gene06489 Phyllostachys edulis HOM05M005400 ORTHO05M006202 1.0e-58 229.6 162 82.7
OB02G39880 Oryza brachyantha HOM05M005400 ORTHO05M006202 5.1e-58 227.3 166 79.5
OsR498G0204795900.01 Oryza sativa ssp. indica HOM05M005400 ORTHO05M006202 2.0e-57 225.3 166 79.5
Zjn_sc00022.1.g00810.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005400 ORTHO05M006202 2.0e-57 225.3 160 84.4
Ot_Chr1_g04249 Oropetium thomaeum HOM05M005400 ORTHO05M006202 3.3e-57 224.6 164 84.1
OsKitaake02g337900 Oryza sativa Kitaake HOM05M005400 ORTHO05M006202 1.3e-56 222.6 166 78.9
Os02g0754300 Oryza sativa ssp. japonica HOM05M005400 ORTHO05M006202 1.3e-56 222.6 166 78.9
Zjn_sc00007.1.g04300.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005400 ORTHO05M006202 8.2e-56 219.9 161 82.0
TraesCS6A03G0827600 Triticum aestivum HOM05M005400 ORTHO05M006202 3.1e-55 218.0 162 79.0
TRIDC6AG047970 Triticum dicoccoides HOM05M005400 ORTHO05M006202 3.1e-55 218.0 162 79.0
TRITD6Av1G194520 Triticum turgidum HOM05M005400 ORTHO05M006202 3.1e-55 218.0 162 79.0
Bradi3g58780 Brachypodium distachyon HOM05M005400 ORTHO05M006202 5.3e-55 217.2 162 77.8
TRIDC6BG055920 Triticum dicoccoides HOM05M005400 ORTHO05M006202 6.9e-55 216.9 162 79.0
GWHGASIY004778 Secale cereale HOM05M005400 ORTHO05M006202 9.1e-55 216.5 162 78.4
V3.Lp_chr6_0G16352 Lolium perenne HOM05M005400 ORTHO05M006202 2.0e-54 215.3 161 78.3
TRITD6Bv1G187290 Triticum turgidum HOM05M005400 ORTHO05M006202 5.9e-54 213.8 162 78.4
TraesCS6B03G0985100 Triticum aestivum HOM05M005400 ORTHO05M006202 1.7e-53 212.2 162 77.8
Horvu_MOREX_6H01G488200 Hordeum vulgare HOM05M005400 ORTHO05M006202 2.2e-53 211.8 163 77.3
TraesCS6D03G0701100 Triticum aestivum HOM05M005400 ORTHO05M006202 1.4e-52 209.1 163 77.9
GWHGAZTO072470 Oryza alta HOM05M005400 ORTHO05M006202 4.8e-48 194.1 164 73.2
Zm00007a00015680 Zea mays B104 HOM05M005400 ORTHO05M006202 4.2e-44 181.0 114 91.2
Zm00001eb249540 Zea mays B73 HOM05M005400 ORTHO05M006202 2.1e-43 178.7 104 95.2
Zm00001eb335180 Zea mays B73 HOM05M005400 ORTHO05M006202 1.8e-42 175.6 104 93.3
AET6Gv20786300 Aegilops tauschii HOM05M005400 ORTHO05M006202 5.3e-39 164.1 103 87.4
MBI02_g35763_MAGBIO Magnolia biondii HOM05M005400 ORTHO05M006202 2.9e-37 158.3 112 74.1
DDU739G0055 Dioscorea dumetorum HOM05M005400 ORTHO05M006202 2.5e-36 155.2 155 61.9
evm.TU.AsparagusV1_03.233.V1.1 Asparagus officinalis HOM05M005400 ORTHO05M006202 1.6e-35 152.5 98 81.6
DDU302G0020 Dioscorea dumetorum HOM05M005400 ORTHO05M006202 1.6e-35 152.5 155 61.3
Glyma.05G178000 Glycine max HOM05M005400 ORTHO05M006202 2.1e-35 152.1 160 60.6
Glyma.08G135000 Glycine max HOM05M005400 ORTHO05M006202 3.6e-35 151.4 160 59.4
CDE10G0106 Ceratophyllum demersum HOM05M005400 ORTHO05M006202 4.7e-35 151.0 154 57.8
MBI05_g37050_MAGBIO Magnolia biondii HOM05M005400 ORTHO05M006202 4.7e-35 151.0 101 78.2
Solyc06g072470.4 Solanum lycopersicum HOM05M005400 ORTHO05M006202 1.4e-34 149.4 161 57.1
CALSI_Maker00045935 Calamus simplicifolius HOM05M005400 ORTHO05M006202 3.0e-34 148.3 157 58.6
Solyc03g097950.4 Solanum lycopersicum HOM05M005400 ORTHO05M006202 1.2e-33 146.4 158 57.0
CDE10G0428 Ceratophyllum demersum HOM05M005400 ORTHO05M006202 2.0e-33 145.6 161 54.7
Spipo16G0045000 Spirodela polyrhiza HOM05M005400 ORTHO05M006202 5.7e-33 144.1 141 63.8
Ma10_g24500 Musa acuminata HOM05M005400 ORTHO05M006202 7.5e-33 143.7 157 56.1
Potri.007G093700 Populus trichocarpa HOM05M005400 ORTHO05M006202 2.8e-32 141.7 140 57.1
Ma07_g12470 Musa acuminata HOM05M005400 ORTHO05M006202 6.3e-32 140.6 162 57.4
AT5G65220 Arabidopsis thaliana HOM05M005400 ORTHO05M006202 1.8e-31 139.0 161 55.3
Zosma01g29600 Zostera marina HOM05M005400 ORTHO05M006202 7.0e-31 137.1 101 74.3
p5.00_sc00128_p0054 Elaeis guineensis HOM05M005400 ORTHO05M006202 2.7e-30 135.2 159 56.6
Pp3c9_19800 Physcomitrium patens HOM05M005400 ORTHO05M006202 2.3e-26 122.1 114 63.2
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05M005400 ORTHO05M006202 6.3e-24 114.0 134 51.5
Mapoly0011s0026 Marchantia polymorpha HOM05M005400 ORTHO05M006202 8.3e-24 113.6 127 50.4
SMO347G0042 Selaginella moellendorffii HOM05M005400 ORTHO05M006202 1.8e-23 112.5 95 65.3
HPP92_013107 Vanilla planifolia HOM05M005400 ORTHO05M006202 8.9e-18 93.6 123 52.8
CBR_g8034 Chara braunii HOM05M005400 ORTHO05M006202 1.1e-15 86.7 103 47.6
HPP92_013094 Vanilla planifolia HOM05M005400 ORTHO05M006202 2.3e-13 79.0 62 69.4
Zm00007a00003521 Zea mays B104 HOM05M005400 ORTHO05M006202 4.0e-10 68.2 40 87.5
Zm00007a00003528 Zea mays B104 HOM05M000309 ORTHO05M000193 4.0e-10 68.2 40 87.5
Zm00007a00026343 Zea mays B104 HOM05M005400 ORTHO05M000193 4.0e-10 68.2 40 87.5
MBI18_g38162_MAGBIO Magnolia biondii HOM05M005400 ORTHO05M006202 5.2e-10 67.8 70 57.1
MCO09G004 Micromonas commoda HOM05M005400 ORTHO05M006202 7.5e-09 63.9 73 43.8
ATR0782G037 Amborella trichopoda HOM05M005400 ORTHO05M006202 2.9e-08 62.0 81 48.1


User provided reference genes

Program Settings