Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G273600 Miscanthus sinensis HOM05M005443 ORTHO05M007143 3.9e-151 537.3 269 100.0
Sspon.04G0003550-2C Saccharum spontaneum HOM05M005443 ORTHO05M007143 1.4e-137 492.3 290 88.3
Sobic.004G238900 Sorghum bicolor HOM05M005443 ORTHO05M007143 3.2e-137 491.1 290 88.3
Sspon.04G0003550-1A Saccharum spontaneum HOM05M005443 ORTHO05M007143 1.7e-135 485.3 308 83.1
Zm00001eb194590 Zea mays B73 HOM05M005443 ORTHO05M007143 8.3e-130 466.5 295 82.7
Misin07G481900 Miscanthus sinensis HOM05M005443 ORTHO05M007143 1.3e-127 459.1 281 86.1
Seita.1G317900 Setaria italica HOM05M005443 ORTHO05M007143 2.5e-126 454.9 292 81.2
Sevir.1G324200 Setaria viridis HOM05M005443 ORTHO05M007143 2.5e-126 454.9 292 81.2
Pahal.1G381500 Panicum hallii HOM05M005443 ORTHO05M007143 3.6e-125 451.1 292 81.2
GWHGAORA025256 Cenchrus purpureus HOM05M005443 ORTHO05M007143 3.2e-121 438.0 289 79.2
EJB05_20013 Eragrostis curvula HOM05M005443 ORTHO05M007143 1.4e-113 412.5 312 71.2
GWHGAORA060715 Cenchrus purpureus HOM05M005443 ORTHO05M007143 3.3e-110 401.4 268 79.1
Ot_Chr1_g04184 Oropetium thomaeum HOM05M005443 ORTHO05M007143 5.6e-110 400.6 287 72.8
PH02Gene01055 Phyllostachys edulis HOM05M005443 ORTHO05M007143 6.0e-104 380.6 292 67.5
AET6Gv20761900 Aegilops tauschii HOM05M005443 ORTHO05M007143 2.5e-102 375.2 292 68.2
TraesCS6D03G0681200 Triticum aestivum HOM05M005443 ORTHO05M007143 2.5e-102 375.2 292 68.2
GWHGAZTO020751 Oryza alta HOM05M005443 ORTHO05M007143 4.3e-102 374.4 287 66.9
GWHGAZTO072375 Oryza alta HOM05M005443 ORTHO05M007143 1.6e-101 372.5 287 66.9
OsKitaake02g330900 Oryza sativa Kitaake HOM05M005443 ORTHO05M007143 1.6e-101 372.5 284 67.3
OsR498G0204759300.01 Oryza sativa ssp. indica HOM05M005443 ORTHO05M007143 1.6e-101 372.5 284 67.3
Os02g0744100 Oryza sativa ssp. japonica HOM05M005443 ORTHO05M007143 1.6e-101 372.5 284 67.3
TraesCS6B03G0954500 Triticum aestivum HOM05M005443 ORTHO05M007143 4.8e-101 370.9 292 67.5
TRITD6Bv1G179650 Triticum turgidum HOM05M005443 ORTHO05M007143 4.8e-101 370.9 292 67.5
TRIDC6BG054030 Triticum dicoccoides HOM05M005443 ORTHO05M007143 8.1e-101 370.2 292 67.1
Horvu_MOREX_6H01G472300 Hordeum vulgare HOM05M005443 ORTHO05M007143 3.1e-100 368.2 292 67.5
GWHGASIY033146 Secale cereale HOM05M005443 ORTHO05M007143 9.0e-100 366.7 292 66.8
Dexi1A01G0029400 Digitaria exilis HOM05M005443 ORTHO05M007143 1.5e-99 365.9 317 66.2
V3.Lp_chr6_0G15820 Lolium perenne HOM05M005443 ORTHO05M007143 5.8e-99 364.0 292 66.1
TraesCS6A03G0805200 Triticum aestivum HOM05M005443 ORTHO05M007143 5.5e-97 357.5 312 62.2
TRITD6Av1G189390 Triticum turgidum HOM05M005443 ORTHO05M007143 5.5e-97 357.5 312 62.2
Bradi3g59480 Brachypodium distachyon HOM05M005443 ORTHO05M007143 1.6e-96 355.9 295 65.4
OB02G39260 Oryza brachyantha HOM05M005443 ORTHO05M007143 2.0e-83 312.4 222 68.9
CALSI_Maker00037093 Calamus simplicifolius HOM05M005443 ORTHO05M007143 6.1e-80 300.8 236 60.6
Aco001087 Ananas comosus HOM05M005443 ORTHO05M007143 4.5e-75 284.6 221 64.3
p5.00_sc00035_p0100 Elaeis guineensis HOM05M005443 ORTHO05M007143 1.4e-73 279.6 259 56.4
MBI05_g10765_MAGBIO Magnolia biondii HOM05M005443 ORTHO05M007143 1.4e-73 279.6 257 54.5
Zjn_sc00022.1.g01490.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005443 ORTHO05M007143 4.7e-72 274.6 267 59.2
p5.00_sc00035_p0099 Elaeis guineensis HOM05M005443 ORTHO05M007143 2.3e-71 272.3 268 54.5
Dexi1B01G0026080 Digitaria exilis HOM05M005443 ORTHO05M007143 8.8e-71 270.4 293 56.3
Solyc06g084030.3 Solanum lycopersicum HOM05M005443 ORTHO05M007143 8.2e-69 263.8 253 53.8
TRIDC6AG046350 Triticum dicoccoides HOM05M005443 ORTHO05M007143 9.1e-68 260.4 192 70.3
ATR0564G196 Amborella trichopoda HOM05M005443 ORTHO05M007143 2.6e-67 258.8 275 51.3
Ma06_g04250 Musa acuminata HOM05M005443 ORTHO05M007143 2.6e-67 258.8 289 49.5
Glyma.02G109300 Glycine max HOM05M005443 ORTHO05M007143 1.7e-66 256.1 256 50.4
Spipo4G0052500 Spirodela polyrhiza HOM05M005443 ORTHO05M007143 1.1e-65 253.4 283 49.5
HPP92_016837 Vanilla planifolia HOM05M005443 ORTHO05M007143 2.5e-65 252.3 256 52.0
DDU344G0019 Dioscorea dumetorum HOM05M005443 ORTHO05M007143 7.2e-65 250.8 268 51.9
Potri.008G088500 Populus trichocarpa HOM05M005443 ORTHO05M007143 7.5e-62 240.7 284 47.9
DDU049G0257 Dioscorea dumetorum HOM05M005443 ORTHO05M007143 2.2e-61 239.2 236 54.2
CDE04G1474 Ceratophyllum demersum HOM05M005443 ORTHO05M007143 2.7e-59 232.3 258 48.1
SEGI_35280 Sequoiadendron giganteum HOM05M005443 ORTHO05M007143 3.8e-58 228.4 257 47.5
CDE06G2440 Ceratophyllum demersum HOM05M005443 ORTHO05M007143 1.8e-55 219.5 227 48.0
AT1G69523 Arabidopsis thaliana HOM05M005443 ORTHO05M007143 2.3e-55 219.2 255 47.5
SMO239G0167 Selaginella moellendorffii HOM05M005443 ORTHO05M007143 1.1e-52 210.3 260 45.4
AT1G69526 Arabidopsis thaliana HOM05M005443 ORTHO05M007143 7.0e-52 207.6 259 45.6
evm.TU.AsparagusV1_08.2519.V1.1 Asparagus officinalis HOM05M005443 ORTHO05M007143 5.0e-50 201.4 178 61.2
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05M005443 ORTHO05M007143 3.2e-49 198.7 218 48.6
Pp3c24_6910 Physcomitrium patens HOM05M005443 ORTHO05M007143 1.2e-48 196.8 219 47.5
Zosma02g19650 Zostera marina HOM05M005443 ORTHO05M001580 7.5e-46 187.6 182 54.4
Mapoly0002s0191 Marchantia polymorpha HOM05M005443 ORTHO05M007143 1.3e-45 186.8 271 41.7
CALSI_Maker00037126 Calamus simplicifolius HOM05M005443 ORTHO05M007143 7.0e-36 154.5 184 47.8
AT1G69520 Arabidopsis thaliana HOM05M005443 ORTHO05M007143 4.6e-35 151.8 198 40.9
SMO137G0248 Selaginella moellendorffii HOM05M005443 ORTHO05M007143 7.3e-33 144.4 195 40.0
CBR_g41443 Chara braunii HOM05M005443 ORTHO05M007143 2.8e-32 142.5 243 38.3
CALSI_Maker00037084 Calamus simplicifolius HOM05M005443 ORTHO05M007143 2.9e-29 132.5 97 59.8
MCO03G556 Micromonas commoda HOM05M005443 ORTHO05M007143 1.3e-21 107.1 243 34.6
Sspon.04G0003550-1P Saccharum spontaneum HOM05M005443 ORTHO05M007143 1.1e-17 94.0 92 59.8
Zm00007a00011318 Zea mays B104 HOM05M014645 ORTHO05M020405 1.1e-17 94.0 69 71.0
PRCOL_00000783 Prasinoderma coloniale HOM05M005443 ORTHO05M007143 3.3e-17 92.4 187 32.6
Zm00001eb254460 Zea mays B73 HOM05M005443 ORTHO05M007143 4.3e-17 92.0 77 70.1
MCO09G753 Micromonas commoda HOM05M005443 ORTHO05M007143 1.5e-14 83.6 142 33.8
Cre07.g342550 Chlamydomonas reinhardtii HOM05M005443 ORTHO05M007143 3.4e-14 82.4 184 32.6
Zm00007a00032700 Zea mays B104 HOM05M005443 ORTHO05M007143 3.4e-14 82.4 89 56.2
PRCOL_00003589 Prasinoderma coloniale HOM05M005443 ORTHO05M007143 1.3e-13 80.5 191 31.4
Zm00007a00006052 Zea mays B104 HOM05M014645 ORTHO05M020405 3.5e-11 72.4 105 46.7
Zm00007a00003508 Zea mays B104 HOM05M014645 ORTHO05M020405 7.8e-11 71.2 105 45.7
CDE08G0834 Ceratophyllum demersum HOM05M005443 ORTHO05M007143 9.6e-09 64.3 65 47.7
Zm00001eb097680 Zea mays B73 HOM05M014645 ORTHO05M020405 8.9e-07 57.8 38 76.3


User provided reference genes

Program Settings