Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G263100 Miscanthus sinensis HOM05M004853 ORTHO05M006509 1.9e-63 245.0 129 100.0
MisinT256800 Miscanthus sinensis HOM05M004853 ORTHO05M006509 2.8e-59 231.1 129 91.5
Sspon.04G0023000-1B Saccharum spontaneum HOM05M004853 ORTHO05M006509 9.4e-55 216.1 120 91.7
Sspon.04G0023000-2C Saccharum spontaneum HOM05M004853 ORTHO05M006509 9.4e-55 216.1 120 91.7
Sobic.004G260400 Sorghum bicolor HOM05M004853 ORTHO05M006509 9.4e-55 216.1 120 92.5
Dexi1B01G0024270 Digitaria exilis HOM05M004853 ORTHO05M006509 4.0e-53 210.7 120 89.2
Pahal.1G372100 Panicum hallii HOM05M004853 ORTHO05M006509 1.5e-52 208.8 120 88.3
Dexi1A01G0025400 Digitaria exilis HOM05M004853 ORTHO05M006509 5.7e-52 206.8 120 87.5
Seita.1G296500 Setaria italica HOM05M004853 ORTHO05M006509 1.3e-51 205.7 120 86.7
Sevir.1G301900 Setaria viridis HOM05M004853 ORTHO05M006509 1.3e-51 205.7 120 86.7
Sspon.06G0018640-2C Saccharum spontaneum HOM05M004853 ORTHO05M006509 1.7e-51 205.3 120 86.7
Zm00001eb252760 Zea mays B73 HOM05M004853 ORTHO05M006509 1.7e-51 205.3 122 89.3
Zm00007a00039625 Zea mays B104 HOM05M004853 ORTHO05M006509 1.7e-51 205.3 122 89.3
GWHGAORA060483 Cenchrus purpureus HOM05M004853 ORTHO05M006509 3.1e-50 201.1 121 86.8
Zjn_sc00007.1.g06790.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M004853 ORTHO05M006509 5.4e-50 200.3 122 83.6
Ot_Chr1_g19239 Oropetium thomaeum HOM05M004853 ORTHO05M006509 1.7e-48 195.3 121 85.1
OB02G37350 Oryza brachyantha HOM05M004853 ORTHO05M006509 1.7e-48 195.3 120 82.5
EJB05_19766 Eragrostis curvula HOM05M004853 ORTHO05M006509 1.5e-47 192.2 121 84.3
Sspon.02G0016970-1A Saccharum spontaneum HOM05M004853 ORTHO05M006509 2.5e-47 191.4 120 83.3
EJB05_50613 Eragrostis curvula HOM05M004853 ORTHO05M006509 7.2e-47 189.9 120 84.2
GWHGAZTO072087 Oryza alta HOM05M004853 ORTHO05M006509 3.6e-46 187.6 120 80.0
Zjn_sc00007.1.g06800.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004853 ORTHO05M006509 4.7e-46 187.2 120 80.8
OsKitaake02g310400 Oryza sativa Kitaake HOM05M004853 ORTHO05M006509 8.0e-46 186.4 120 79.2
OsR498G0204654300.01 Oryza sativa ssp. indica HOM05M004853 ORTHO05M006509 8.0e-46 186.4 120 79.2
Os02g0717100 Oryza sativa ssp. japonica HOM05M004853 ORTHO05M006509 8.0e-46 186.4 120 79.2
GWHGAZTO020436 Oryza alta HOM05M004853 ORTHO05M006509 1.8e-45 185.3 120 80.0
Bradi3g53390 Brachypodium distachyon HOM05M004853 ORTHO05M006509 2.3e-45 184.9 120 78.3
V3.Lp_chr6_0G14556 Lolium perenne HOM05M004853 ORTHO05M006509 5.2e-45 183.7 123 75.6
TraesCS6B03G0885600 Triticum aestivum HOM05M004853 ORTHO05M006509 6.8e-45 183.3 120 77.5
GWHGASIY032572 Secale cereale HOM05M004853 ORTHO05M006509 2.0e-44 181.8 120 77.5
GWHGASIY032576 Secale cereale HOM05M004853 ORTHO05M006509 2.0e-44 181.8 120 77.5
TRITD6Bv1G164750 Triticum turgidum HOM05M004853 ORTHO05M006509 2.0e-44 181.8 120 76.7
AET6Gv20706900 Aegilops tauschii HOM05M004853 ORTHO05M006509 5.7e-44 180.3 120 76.7
TraesCS6D03G0628400 Triticum aestivum HOM05M004853 ORTHO05M006509 5.7e-44 180.3 120 76.7
Horvu_MOREX_6H01G431300 Hordeum vulgare HOM05M004853 ORTHO05M006509 9.8e-44 179.5 120 76.7
TraesCS6A03G0746600 Triticum aestivum HOM05M004853 ORTHO05M006509 8.3e-43 176.4 120 75.0
TRITD6Av1G176140 Triticum turgidum HOM05M004853 ORTHO05M006509 8.3e-43 176.4 120 75.0
Zjn_sc00022.1.g03150.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004853 ORTHO05M006509 9.5e-39 162.9 120 73.3
Pahal.1G372500 Panicum hallii HOM05M004853 ORTHO05M006509 6.1e-38 160.2 84 95.2
Aco018514 Ananas comosus HOM05M004853 ORTHO05M006509 1.8e-34 148.7 122 63.9
Ma09_g18700 Musa acuminata HOM05M004853 ORTHO05M006509 7.0e-34 146.7 120 63.3
p5.00_sc00131_p0016 Elaeis guineensis HOM05M004853 ORTHO05M006509 9.2e-34 146.4 120 61.7
Zosma03g12990 Zostera marina HOM05M004853 ORTHO05M006509 2.7e-33 144.8 120 62.5
MBI01_g33892_MAGBIO Magnolia biondii HOM05M004853 ORTHO05M006509 5.9e-33 143.7 120 61.7
evm.TU.AsparagusV1_05.1461.V1.1 Asparagus officinalis HOM05M004853 ORTHO05M006509 1.0e-32 142.9 119 60.5
CALSI_Maker00010717 Calamus simplicifolius HOM05M004853 ORTHO05M006509 1.3e-32 142.5 120 60.0
Potri.001G013700 Populus trichocarpa HOM05M004853 ORTHO05M006509 3.9e-32 141.0 120 60.0
HPP92_022782 Vanilla planifolia HOM05M004853 ORTHO05M006509 1.1e-31 139.4 120 60.0
ATR0605G157 Amborella trichopoda HOM05M004853 ORTHO05M006509 3.3e-31 137.9 119 58.8
Spipo12G0037700 Spirodela polyrhiza HOM05M004853 ORTHO05M006509 4.3e-31 137.5 120 60.0
Potri.003G212400 Populus trichocarpa HOM05M004853 ORTHO05M006509 1.2e-30 136.0 120 58.3
Potri.T056064 Populus trichocarpa HOM05M004853 ORTHO05M006509 1.2e-30 136.0 120 58.3
Sspon.02G0016970-2D Saccharum spontaneum HOM05M004853 ORTHO05M006509 1.8e-29 132.1 83 81.9
CDE10G0673 Ceratophyllum demersum HOM05M004853 ORTHO05M006509 4.0e-29 131.0 120 56.7
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05M004853 ORTHO05M006509 1.2e-28 129.4 120 55.0
Asa8G03211 Allium sativum HOM05M004853 ORTHO05M006509 2.6e-28 128.3 120 55.0
Glyma.20G247000 Glycine max HOM05M004853 ORTHO05M006509 5.8e-28 127.1 120 56.7
AT5G19630 Arabidopsis thaliana HOM05M004853 ORTHO05M006509 7.5e-28 126.7 120 52.5
Solyc01g006480.3 Solanum lycopersicum HOM05M004853 ORTHO05M006509 9.8e-28 126.3 121 55.4
Mapoly0046s0043 Marchantia polymorpha HOM05M004853 ORTHO05M006509 4.9e-27 124.0 120 51.7
SEGI_09892 Sequoiadendron giganteum HOM05M004853 ORTHO05M006509 8.3e-27 123.2 119 52.9
Pp3c7_25270 Physcomitrium patens HOM05M004853 ORTHO05M006509 4.1e-26 120.9 120 52.5
Solyc03g063290.3 Solanum lycopersicum HOM05M004853 ORTHO05M006509 1.6e-25 119.0 116 49.1
Pp3c25_340 Physcomitrium patens HOM05M004853 ORTHO05M006509 2.7e-25 118.2 120 50.8
SMO117G0218 Selaginella moellendorffii HOM05M004853 ORTHO05M006509 2.7e-25 118.2 120 50.8
GWHGAZTO011510 Oryza alta HOM05M004853 ORTHO05M006509 7.8e-25 116.7 72 80.6
DDU888G0073 Dioscorea dumetorum HOM05M004853 ORTHO05M006509 1.5e-23 112.5 93 60.2
GWHGAZTO060408 Oryza alta HOM05M004853 ORTHO05M006509 7.5e-20 100.1 69 69.6
Sspon.06G0018640-1A Saccharum spontaneum HOM05M004853 ORTHO05M006509 2.9e-19 98.2 83 68.7
PH02Gene16803 Phyllostachys edulis HOM05M004853 ORTHO05M006509 2.3e-16 88.6 46 93.5
GWHGAZTO040619 Oryza alta HOM05M004853 ORTHO05M006509 9.5e-15 83.2 74 62.2
Glyma.18G020100 Glycine max HOM05M004853 ORTHO05M006509 3.2e-10 68.2 81 49.4
GWHGAZTO089069 Oryza alta HOM05M004853 ORTHO05M009525 2.7e-09 65.1 47 63.8
PRCOL_00006777 Prasinoderma coloniale HOM05M004853 ORTHO05M006509 2.5e-07 58.5 83 37.3
Potri.006G191700 Populus trichocarpa HOM05M004853 ORTHO05M006509 4.7e-06 54.3 78 39.7


User provided reference genes

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