Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G233400 Miscanthus sinensis HOM05M006252 ORTHO05M008410 5.0e-91 337.0 175 100.0
Sspon.04G0006680-3C Saccharum spontaneum HOM05M006252 ORTHO05M008410 6.5e-91 336.7 175 99.4
Sspon.04G0006680-2P Saccharum spontaneum HOM05M006252 ORTHO05M008410 2.5e-90 334.7 175 98.9
GWHGAORA024751 Cenchrus purpureus HOM05M006252 ORTHO05M008410 4.2e-90 334.0 175 98.3
GWHGAORA060157 Cenchrus purpureus HOM05M006252 ORTHO05M008410 5.5e-90 333.6 175 97.7
Sobic.004G288100 Sorghum bicolor HOM05M006252 ORTHO05M008410 7.2e-90 333.2 175 98.3
Misin07G436600 Miscanthus sinensis HOM05M006252 ORTHO05M008410 1.6e-89 332.0 175 97.7
Pahal.1G340500 Panicum hallii HOM05M006252 ORTHO05M008410 4.7e-89 330.5 175 97.1
Seita.1G265700 Setaria italica HOM05M006252 ORTHO05M008410 4.7e-89 330.5 175 97.1
Sevir.1G270300 Setaria viridis HOM05M006252 ORTHO05M008410 4.7e-89 330.5 175 97.1
Zm00007a00033289 Zea mays B104 HOM05M006252 ORTHO05M008410 3.0e-88 327.8 175 96.6
Zm00001eb186920 Zea mays B73 HOM05M006252 ORTHO05M008410 8.8e-88 326.2 175 96.0
Ot_Chr1_gn31534 Oropetium thomaeum HOM05M006252 ORTHO05M008410 2.2e-83 311.6 175 89.7
EJB05_19519 Eragrostis curvula HOM05M006252 ORTHO05M008410 1.4e-80 302.4 173 86.1
PH02Gene44112 Phyllostachys edulis HOM05M006252 ORTHO05M008410 7.0e-77 290.0 175 85.1
PH02Gene43720 Phyllostachys edulis HOM05M006252 ORTHO05M008410 2.9e-75 284.6 175 83.4
Sspon.04G0006680-2B Saccharum spontaneum HOM05M006252 ORTHO05M008410 5.0e-75 283.9 144 98.6
OB02G34420 Oryza brachyantha HOM05M006252 ORTHO05M008410 1.8e-72 275.4 175 78.3
Sspon.04G0006680-1A Saccharum spontaneum HOM05M006252 ORTHO05M008410 3.0e-72 274.6 140 98.6
GWHGAZTO071633 Oryza alta HOM05M006252 ORTHO05M008410 2.6e-71 271.6 175 77.1
Bradi3g51340 Brachypodium distachyon HOM05M006252 ORTHO05M008410 3.3e-71 271.2 181 78.5
GWHGASIY032430 Secale cereale HOM05M006252 ORTHO05M008410 1.3e-70 269.2 177 79.1
GWHGASIY032435 Secale cereale HOM05M006252 ORTHO05M008410 1.3e-70 269.2 177 79.1
TraesCS6A03G0666300 Triticum aestivum HOM05M006252 ORTHO05M008410 1.3e-70 269.2 177 79.7
TraesCS6D03G0555200 Triticum aestivum HOM05M006252 ORTHO05M008410 1.3e-70 269.2 177 79.7
TRIDC6AG037760 Triticum dicoccoides HOM05M006252 ORTHO05M008410 1.3e-70 269.2 177 79.7
Horvu_MOREX_6H01G381900 Hordeum vulgare HOM05M006252 ORTHO05M008410 1.7e-70 268.9 177 79.1
TraesCS6B03G0810200 Triticum aestivum HOM05M006252 ORTHO05M008410 2.8e-70 268.1 177 79.1
TRIDC6BG044690 Triticum dicoccoides HOM05M006252 ORTHO05M008410 2.8e-70 268.1 177 79.1
V3.Lp_chr6_0G13200 Lolium perenne HOM05M006252 ORTHO05M008410 6.3e-70 266.9 174 79.9
TRITD6Av1G156310 Triticum turgidum HOM05M006252 ORTHO05M008410 4.5e-68 260.8 171 78.9
TRITD6Bv1G142420 Triticum turgidum HOM05M006252 ORTHO05M008410 1.0e-67 259.6 171 78.4
OsKitaake02g279800 Oryza sativa Kitaake HOM05M006252 ORTHO05M008410 3.2e-66 254.6 175 73.1
Os02g0666800 Oryza sativa ssp. japonica HOM05M006252 ORTHO05M008410 3.2e-66 254.6 175 73.1
OsR498G0204481800.01 Oryza sativa ssp. indica HOM05M006252 ORTHO05M008410 4.2e-66 254.2 175 72.6
p5.00_sc00475_p0003 Elaeis guineensis HOM05M006252 ORTHO05M008410 4.0e-64 247.7 175 70.3
Potri.018G101100 Populus trichocarpa HOM05M006252 ORTHO05M008410 2.0e-63 245.4 175 70.3
evm.TU.AsparagusV1_01.866.V1.1 Asparagus officinalis HOM05M006252 ORTHO05M008410 4.4e-63 244.2 174 69.5
AT2G23940 Arabidopsis thaliana HOM05M006252 ORTHO05M008410 4.1e-61 237.7 175 70.9
Glyma.02G207700 Glycine max HOM05M006252 ORTHO05M008410 2.0e-60 235.3 175 68.0
Glyma.17G070000 Glycine max HOM05M006252 ORTHO05M008410 5.9e-60 233.8 175 67.4
Ma04_g35830 Musa acuminata HOM05M006252 ORTHO05M008410 4.2e-58 227.6 175 66.3
GWHGAZTO019973 Oryza alta HOM05M006252 ORTHO05M008410 7.2e-58 226.9 140 79.3
AET6Gv20636900 Aegilops tauschii HOM05M006252 ORTHO05M008410 1.6e-57 225.7 142 81.7
ATR0580G158 Amborella trichopoda HOM05M006252 ORTHO05M008410 3.6e-57 224.6 175 64.0
HPP92_025776 Vanilla planifolia HOM05M006252 ORTHO05M008410 4.7e-57 224.2 175 66.9
Aco012005 Ananas comosus HOM05M006252 ORTHO05M008410 1.0e-56 223.0 175 68.0
Zosma02g20390 Zostera marina HOM05M006252 ORTHO05M008410 1.4e-56 222.6 170 66.5
Asa3G02253 Allium sativum HOM05M006252 ORTHO05M008410 2.6e-55 218.4 175 64.6
Zosma04g18120 Zostera marina HOM05M006252 ORTHO05M008410 3.4e-55 218.0 168 69.6
CDE05G2574 Ceratophyllum demersum HOM05M006252 ORTHO05M008410 4.4e-55 217.6 175 65.1
AT4G30500 Arabidopsis thaliana HOM05M006252 ORTHO05M008410 3.7e-54 214.5 175 65.1
CALSI_Maker00020083 Calamus simplicifolius HOM05M006252 ORTHO05M008410 6.3e-54 213.8 248 49.6
MBI14_g16418_MAGBIO Magnolia biondii HOM05M006252 ORTHO05M008410 6.3e-54 213.8 146 74.7
Spipo28G0013600 Spirodela polyrhiza HOM05M006252 ORTHO05M008410 8.3e-54 213.4 175 64.0
DDU407G0202 Dioscorea dumetorum HOM05M006252 ORTHO05M008410 8.6e-51 203.4 175 61.7
Solyc07g006150.3 Solanum lycopersicum HOM05M006252 ORTHO05M008410 1.9e-50 202.2 175 60.6
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05M006252 ORTHO05M008410 9.8e-47 189.9 171 55.0
Mapoly0003s0226 Marchantia polymorpha HOM05M006252 ORTHO05M008410 4.7e-41 171.0 172 50.6
SMO164G0234 Selaginella moellendorffii HOM05M006252 ORTHO05M008410 3.1e-40 168.3 176 51.7
Pp3c11_17250 Physcomitrium patens HOM05M006252 ORTHO05M008410 1.4e-37 159.5 173 49.1
CBR_g3690 Chara braunii HOM05M006252 ORTHO05M008410 1.2e-36 156.4 173 45.7
p5.00_sc00097_p0020 Elaeis guineensis HOM05M006252 ORTHO05M008410 2.1e-33 145.6 151 54.3
Dexi1A01G0022820 Digitaria exilis HOM05M006252 ORTHO05M008410 4.4e-31 137.9 140 57.9
Sspon.04G0006690-1A Saccharum spontaneum HOM05M006252 ORTHO05M008410 6.4e-30 134.0 108 71.3
Cre02.g096850 Chlamydomonas reinhardtii HOM05M006252 ORTHO05M008410 3.8e-22 108.2 171 37.4
PRCOL_00004780 Prasinoderma coloniale HOM05M006252 ORTHO05M008410 2.6e-15 85.5 175 29.7
MCO15G043 Micromonas commoda HOM05M006252 ORTHO05M008410 5.4e-13 77.8 173 31.2


User provided reference genes

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